Wall clock time and date at job start Tue Mar 31 2020 05:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86791 * 120.00422 * 2 1 4 4 H 1.48498 * 109.47566 * 270.00164 * 3 2 1 5 5 H 1.48504 * 109.47142 * 30.00306 * 3 2 1 6 6 H 1.48501 * 109.47202 * 150.00169 * 3 2 1 7 7 C 1.38798 * 119.99590 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00360 * 359.97438 * 7 2 1 9 9 S 1.76204 * 120.00204 * 180.02562 * 7 2 1 10 10 C 1.80995 * 100.00165 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47253 * 179.97438 * 10 9 7 12 12 O 1.21285 * 119.99353 * 0.02562 * 11 10 9 13 13 N 1.34772 * 120.00451 * 179.97438 * 11 10 9 14 14 C 1.46496 * 120.00497 * 180.02562 * 13 11 10 15 15 C 1.52995 * 109.47520 * 180.02562 * 14 13 11 16 16 C 1.50700 * 109.47474 * 179.97438 * 15 14 13 17 17 C 1.38250 * 119.97595 * 270.28492 * 16 15 14 18 18 C 1.38194 * 120.02377 * 180.32342 * 17 16 15 19 19 C 1.38460 * 119.97497 * 359.41202 * 18 17 16 20 20 F 1.35105 * 120.02800 * 180.30394 * 19 18 17 21 21 C 1.38467 * 119.94896 * 0.28520 * 19 18 17 22 22 C 1.38197 * 119.97188 * 359.97438 * 21 19 18 23 23 H 0.97002 * 119.99338 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.46999 * 59.99643 * 10 9 7 25 25 H 1.09000 * 109.47409 * 299.99735 * 10 9 7 26 26 H 0.97005 * 120.00030 * 0.02562 * 13 11 10 27 27 H 1.08998 * 109.46738 * 60.00216 * 14 13 11 28 28 H 1.09000 * 109.46962 * 300.00661 * 14 13 11 29 29 H 1.09005 * 109.46836 * 59.99961 * 15 14 13 30 30 H 1.09000 * 109.47351 * 300.00188 * 15 14 13 31 31 H 1.07998 * 119.98560 * 0.03739 * 17 16 15 32 32 H 1.08002 * 120.01531 * 179.69754 * 18 17 16 33 33 H 1.07998 * 120.01314 * 180.02562 * 21 19 18 34 34 H 1.07994 * 119.98607 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4980 2.0464 -1.4000 5 1 1.4480 2.6526 0.7001 6 1 3.5480 1.4399 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 16 3.7723 -1.2023 0.0001 10 6 4.0864 -2.9847 -0.0001 11 6 5.5729 -3.2329 -0.0002 12 8 6.3439 -2.2966 0.0003 13 7 6.0454 -4.4950 0.0001 14 6 7.4904 -4.7362 0.0005 15 6 7.7560 -6.2430 0.0002 16 6 9.2425 -6.4911 0.0000 17 6 9.9247 -6.5987 -1.1976 18 6 11.2866 -6.8329 -1.1990 19 6 11.9700 -6.9476 -0.0003 20 9 13.3026 -7.1705 -0.0003 21 6 11.2867 -6.8334 1.1987 22 6 9.9238 -6.6046 1.1975 23 1 -0.4849 0.8401 0.0004 24 1 3.6437 -3.4316 -0.8904 25 1 3.6432 -3.4320 0.8896 26 1 5.4288 -5.2438 0.0000 27 1 7.9331 -4.2891 0.8906 28 1 7.9336 -4.2893 -0.8893 29 1 7.3134 -6.6897 -0.8902 30 1 7.3127 -6.6903 0.8898 31 1 9.3922 -6.5043 -2.1325 32 1 11.8186 -6.9218 -2.1347 33 1 11.8188 -6.9224 2.1343 34 1 9.3908 -6.5151 2.1324 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000031544987.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:56 Heat of formation + Delta-G solvation = -70.956455 kcal Electronic energy + Delta-G solvation = -18109.724692 eV Core-core repulsion = 14854.721388 eV Total energy + Delta-G solvation = -3255.003303 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.078 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.22902 -39.79212 -39.10083 -35.43171 -32.70763 -32.44476 -31.54065 -29.88136 -27.75087 -25.62472 -23.70849 -23.46761 -21.51729 -20.49241 -18.05658 -17.86338 -16.83609 -16.55522 -16.15338 -15.89210 -15.59893 -15.51246 -14.96705 -14.43449 -14.34666 -13.91561 -13.80313 -13.46324 -13.44692 -12.92413 -12.80078 -12.24305 -12.04623 -11.94090 -11.61619 -11.28371 -11.27223 -11.01479 -10.62101 -9.86873 -9.57060 -9.51700 -9.04384 -8.98740 -8.93970 -8.51167 -6.93030 -6.29915 -4.01755 0.71240 0.82913 2.74350 2.95426 3.13240 3.31282 3.34568 3.50102 3.64215 3.88951 4.28242 4.32314 4.40409 4.51972 4.68881 4.69461 4.79595 4.86477 5.06193 5.09221 5.22004 5.31092 5.47297 5.62228 5.63400 5.72834 5.75922 5.79960 5.85387 5.99595 6.12957 6.46139 6.50310 7.57178 7.93195 8.40526 8.46498 9.16310 10.79276 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.050269 B = 0.002455 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.868436 B =11401.887984 C =11643.207853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.124 4.124 11 C 0.530 3.470 12 O -0.519 6.519 13 N -0.738 5.738 14 C 0.126 3.874 15 C -0.092 4.092 16 C -0.089 4.089 17 C -0.084 4.084 18 C -0.152 4.152 19 C 0.093 3.907 20 F -0.142 7.142 21 C -0.152 4.152 22 C -0.084 4.084 23 H 0.271 0.729 24 H 0.097 0.903 25 H 0.098 0.902 26 H 0.400 0.600 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.135 0.865 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.839 -17.744 0.086 26.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.114 4.114 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.275 4.275 11 C 0.316 3.684 12 O -0.393 6.393 13 N -0.393 5.393 14 C 0.002 3.998 15 C -0.129 4.129 16 C -0.090 4.090 17 C -0.102 4.102 18 C -0.171 4.171 19 C 0.074 3.926 20 F -0.120 7.120 21 C -0.171 4.171 22 C -0.102 4.102 23 H 0.081 0.919 24 H 0.115 0.885 25 H 0.116 0.884 26 H 0.234 0.766 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.152 0.848 32 H 0.153 0.847 33 H 0.153 0.847 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 21.012 -16.072 0.089 26.455 hybrid contribution -0.798 -0.756 -0.035 1.100 sum 20.215 -16.828 0.054 26.302 Atomic orbital electron populations 1.69942 1.05911 1.27770 1.48058 1.24720 0.94466 0.98993 0.93185 0.86728 0.81895 0.83249 0.79940 1.19209 1.19944 1.15911 1.22316 0.88253 0.97536 1.58790 0.89373 1.84807 1.09296 1.00087 1.97428 1.23279 0.93966 1.04389 1.05834 1.20293 0.90612 0.82270 0.75246 1.90709 1.58805 1.42215 1.47594 1.45963 1.07361 1.08137 1.77857 1.21250 0.81549 0.94181 1.02828 1.20796 0.91831 0.96166 1.04129 1.19770 0.95659 1.00437 0.93134 1.20977 0.93216 0.97710 0.98291 1.21164 0.95280 1.03409 0.97211 1.17768 0.77551 1.02482 0.94798 1.91505 1.30896 1.92172 1.97450 1.21167 0.95263 1.03426 0.97208 1.20977 0.93207 0.97723 0.98289 0.91938 0.88470 0.88421 0.76613 0.91382 0.91389 0.89882 0.89876 0.84753 0.84657 0.84657 0.84753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.44 13.97 55.49 0.78 -25.66 16 2 C 0.10 2.77 5.50 -17.43 -0.10 2.67 16 3 Si 0.86 21.71 27.74 -169.99 -4.71 17.00 16 4 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 6 H -0.24 -5.95 6.74 56.52 0.38 -5.57 16 7 C -0.52 -14.91 10.04 30.94 0.31 -14.60 16 8 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 9 S -0.14 -3.59 18.55 -107.50 -1.99 -5.58 16 10 C -0.12 -2.33 6.16 36.01 0.22 -2.11 16 11 C 0.53 9.13 7.85 -10.99 -0.09 9.04 16 12 O -0.52 -11.08 15.86 5.55 0.09 -11.00 16 13 N -0.74 -8.64 5.56 -60.30 -0.33 -8.98 16 14 C 0.13 1.28 5.66 -4.05 -0.02 1.25 16 15 C -0.09 -0.60 5.46 -27.89 -0.15 -0.75 16 16 C -0.09 -0.66 5.13 -104.61 -0.54 -1.19 16 17 C -0.08 -0.61 9.70 -39.59 -0.38 -0.99 16 18 C -0.15 -1.17 10.03 -39.52 -0.40 -1.57 16 19 C 0.09 0.82 7.30 -39.42 -0.29 0.53 16 20 F -0.14 -1.37 17.27 2.25 0.04 -1.34 16 21 C -0.15 -1.17 10.03 -39.51 -0.40 -1.57 16 22 C -0.08 -0.60 9.70 -39.59 -0.38 -0.99 16 23 H 0.27 7.55 8.31 -40.82 -0.34 7.22 16 24 H 0.10 1.69 8.14 -51.91 -0.42 1.26 16 25 H 0.10 1.70 8.14 -51.92 -0.42 1.27 16 26 H 0.40 3.40 8.47 -40.82 -0.35 3.06 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.08 0.46 8.09 -51.93 -0.42 0.04 16 30 H 0.08 0.46 8.09 -51.93 -0.42 0.04 16 31 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 32 H 0.14 0.83 8.06 -52.49 -0.42 0.40 16 33 H 0.14 0.83 8.06 -52.49 -0.42 0.40 16 34 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 LS Contribution 318.22 15.07 4.80 4.80 Total: -1.00 -34.27 318.22 -7.70 -41.97 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -4.15 Total: -0.92 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: -2.21 Total: -10.29 kcal Atomic # 7 Polarization: -35.08 SS G_CDS: 0.44 Total: -34.64 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.09 Total: -11.00 kcal Atomic # 9 Polarization: -1.37 SS G_CDS: 0.04 Total: -1.34 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.71 Total: 17.00 kcal Atomic # 16 Polarization: -3.59 SS G_CDS: -1.99 Total: -5.58 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -34.27 -7.70 -41.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031544987.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.988 kcal (2) G-P(sol) polarization free energy of solvation -34.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds