Wall clock time and date at job start Tue Mar 31 2020 05:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86804 * 120.00069 * 2 1 4 4 H 1.48503 * 109.47095 * 270.00325 * 3 2 1 5 5 H 1.48504 * 109.46845 * 29.99889 * 3 2 1 6 6 H 1.48491 * 109.47197 * 150.00390 * 3 2 1 7 7 C 1.38796 * 120.00017 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00138 * 0.02562 * 7 2 1 9 9 S 1.76204 * 120.00054 * 179.97438 * 7 2 1 10 10 C 1.80997 * 99.99823 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.46829 * 179.97438 * 10 9 7 12 12 O 1.21288 * 120.00292 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00115 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00376 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47473 * 180.02562 * 14 13 11 16 16 C 1.50701 * 109.47212 * 179.97438 * 15 14 13 17 17 C 1.38224 * 120.01147 * 99.99850 * 16 15 14 18 18 C 1.38218 * 120.02596 * 179.97438 * 17 16 15 19 19 C 1.38270 * 120.05109 * 0.02732 * 18 17 16 20 20 C 1.38170 * 120.02397 * 359.97438 * 19 18 17 21 21 C 1.38432 * 120.01370 * 279.72550 * 16 15 14 22 22 F 1.35102 * 120.02704 * 359.97438 * 21 16 15 23 23 H 0.97001 * 119.99667 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47247 * 60.00315 * 10 9 7 25 25 H 1.08992 * 109.47234 * 299.99341 * 10 9 7 26 26 H 0.97004 * 120.00228 * 0.02562 * 13 11 10 27 27 H 1.09002 * 109.47129 * 59.99747 * 14 13 11 28 28 H 1.08998 * 109.46845 * 300.00553 * 14 13 11 29 29 H 1.09002 * 109.47153 * 59.99757 * 15 14 13 30 30 H 1.09001 * 109.46832 * 299.99948 * 15 14 13 31 31 H 1.08002 * 119.98697 * 359.97438 * 17 16 15 32 32 H 1.07999 * 119.97411 * 180.02562 * 18 17 16 33 33 H 1.07995 * 119.98601 * 179.97438 * 19 18 17 34 34 H 1.08004 * 120.01264 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6178 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5479 1.4402 0.6999 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1373 -0.0014 9 16 3.7723 -1.2020 -0.0012 10 6 4.0866 -2.9845 -0.0025 11 6 5.5730 -3.2325 -0.0039 12 8 6.3441 -2.2962 -0.0045 13 7 6.0457 -4.4946 -0.0045 14 6 7.4907 -4.7357 -0.0053 15 6 7.7565 -6.2425 -0.0065 16 6 9.2429 -6.4904 -0.0080 17 6 9.8917 -6.8099 1.1700 18 6 11.2549 -7.0379 1.1689 19 6 11.9714 -6.9462 -0.0101 20 6 11.3250 -6.6269 -1.1888 21 6 9.9583 -6.4038 -1.1900 22 9 9.3242 -6.0975 -2.3430 23 1 -0.4850 0.8401 0.0004 24 1 3.6433 -3.4309 -0.8927 25 1 3.6441 -3.4321 0.8873 26 1 5.4291 -5.2435 -0.0045 27 1 7.9341 -4.2889 0.8846 28 1 7.9332 -4.2883 -0.8953 29 1 7.3131 -6.6889 -0.8967 30 1 7.3139 -6.6901 0.8833 31 1 9.3331 -6.8815 2.0916 32 1 11.7609 -7.2880 2.0897 33 1 13.0366 -7.1241 -0.0096 34 1 11.8849 -6.5548 -2.1096 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032701876.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:00 Heat of formation + Delta-G solvation = -69.276095 kcal Electronic energy + Delta-G solvation = -18451.173375 eV Core-core repulsion = 15196.242937 eV Total energy + Delta-G solvation = -3254.930437 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.078 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.17015 -39.64662 -39.07902 -35.52396 -32.94742 -32.42720 -30.93985 -29.96966 -27.96091 -25.60811 -23.84232 -23.15310 -21.55646 -20.45999 -17.98212 -17.77307 -16.85593 -16.54062 -16.26242 -15.87096 -15.60975 -15.42208 -14.94566 -14.55609 -14.15412 -13.92103 -13.54088 -13.45196 -13.31688 -12.85887 -12.78039 -12.36977 -12.06843 -12.00178 -11.47801 -11.33270 -11.25099 -10.99600 -10.59877 -9.85011 -9.54803 -9.35176 -9.01970 -9.00642 -8.95599 -8.48754 -6.90647 -6.27968 -3.99590 0.75128 0.81129 2.77051 2.99309 3.16224 3.32954 3.36193 3.51906 3.66283 3.90970 4.30048 4.34104 4.35779 4.56075 4.70486 4.75166 4.81611 4.91365 5.02005 5.11134 5.22616 5.33547 5.49669 5.58271 5.66438 5.76738 5.79692 5.87274 5.96760 6.01533 6.02652 6.48440 6.53046 7.61332 7.95182 8.42609 8.50295 9.18309 10.81252 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.043449 B = 0.002743 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.273679 B =10205.870091 C =10260.845614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.124 4.124 11 C 0.530 3.470 12 O -0.519 6.519 13 N -0.737 5.737 14 C 0.127 3.873 15 C -0.092 4.092 16 C -0.114 4.114 17 C -0.085 4.085 18 C -0.130 4.130 19 C -0.094 4.094 20 C -0.154 4.154 21 C 0.104 3.896 22 F -0.135 7.135 23 H 0.271 0.729 24 H 0.097 0.903 25 H 0.098 0.902 26 H 0.400 0.600 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.134 0.866 32 H 0.130 0.870 33 H 0.132 0.868 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.831 -18.280 1.234 28.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.274 4.274 11 C 0.316 3.684 12 O -0.394 6.394 13 N -0.392 5.392 14 C 0.003 3.997 15 C -0.129 4.129 16 C -0.115 4.115 17 C -0.103 4.103 18 C -0.148 4.148 19 C -0.112 4.112 20 C -0.172 4.172 21 C 0.084 3.916 22 F -0.113 7.113 23 H 0.081 0.919 24 H 0.115 0.885 25 H 0.116 0.884 26 H 0.234 0.766 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.102 0.898 30 H 0.105 0.895 31 H 0.152 0.848 32 H 0.148 0.852 33 H 0.150 0.850 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 22.921 -16.586 1.187 28.318 hybrid contribution -1.162 -0.671 -0.288 1.373 sum 21.759 -17.257 0.899 27.786 Atomic orbital electron populations 1.69941 1.05911 1.27756 1.48124 1.24717 0.94460 0.98982 0.93190 0.86729 0.81894 0.83251 0.79949 1.19202 1.19950 1.15913 1.22319 0.88270 0.97540 1.58725 0.89375 1.84801 1.09266 1.00119 1.97425 1.23276 0.93938 1.04360 1.05843 1.20294 0.90619 0.82244 0.75249 1.90705 1.58804 1.42209 1.47632 1.45937 1.07267 1.08158 1.77813 1.21210 0.81691 0.94020 1.02780 1.20734 0.91372 0.96525 1.04308 1.19763 0.96168 1.03039 0.92528 1.21019 0.94635 0.97644 0.97046 1.21230 0.94175 1.00816 0.98545 1.21040 1.00264 0.98137 0.91791 1.21184 0.92686 1.03144 1.00222 1.17614 0.90854 1.01344 0.81739 1.91525 1.82226 1.90384 1.47172 0.91949 0.88453 0.88410 0.76619 0.91318 0.91442 0.89786 0.89547 0.84811 0.85222 0.85035 0.84678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.72 13.97 55.49 0.78 -25.95 16 2 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 3 Si 0.86 21.97 27.74 -169.99 -4.71 17.26 16 4 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.27 -6.76 7.11 56.52 0.40 -6.35 16 6 H -0.24 -6.02 6.74 56.52 0.38 -5.64 16 7 C -0.52 -15.12 10.04 30.94 0.31 -14.81 16 8 H 0.09 2.66 8.03 -52.49 -0.42 2.23 16 9 S -0.14 -3.66 18.55 -107.50 -1.99 -5.65 16 10 C -0.12 -2.41 6.16 36.01 0.22 -2.19 16 11 C 0.53 9.63 7.85 -10.98 -0.09 9.54 16 12 O -0.52 -11.55 15.86 5.55 0.09 -11.46 16 13 N -0.74 -9.55 5.56 -60.29 -0.33 -9.89 16 14 C 0.13 1.50 5.65 -4.04 -0.02 1.47 16 15 C -0.09 -0.77 5.19 -27.88 -0.14 -0.92 16 16 C -0.11 -1.00 5.14 -104.55 -0.54 -1.54 16 17 C -0.09 -0.61 9.67 -39.59 -0.38 -1.00 16 18 C -0.13 -0.81 10.04 -39.58 -0.40 -1.21 16 19 C -0.09 -0.60 10.04 -39.59 -0.40 -1.00 16 20 C -0.15 -1.21 10.03 -39.52 -0.40 -1.61 16 21 C 0.10 1.01 7.24 -39.42 -0.29 0.72 16 22 F -0.13 -1.53 16.66 2.25 0.04 -1.49 16 23 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 24 H 0.10 1.76 8.14 -51.92 -0.42 1.34 16 25 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 26 H 0.40 3.88 8.47 -40.82 -0.35 3.53 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.08 0.69 7.94 -51.93 -0.41 0.28 16 30 H 0.09 0.57 8.01 -51.93 -0.42 0.15 16 31 H 0.13 0.72 8.04 -52.49 -0.42 0.30 16 32 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 33 H 0.13 0.52 8.06 -52.49 -0.42 0.09 16 34 H 0.14 0.85 8.06 -52.48 -0.42 0.43 16 LS Contribution 317.37 15.07 4.78 4.78 Total: -1.00 -34.87 317.37 -7.71 -42.58 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -4.13 Total: -0.36 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: -2.21 Total: -9.81 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: 0.44 Total: -35.84 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.09 Total: -11.46 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.71 Total: 17.26 kcal Atomic # 16 Polarization: -3.66 SS G_CDS: -1.99 Total: -5.65 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -34.87 -7.71 -42.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032701876.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.701 kcal (2) G-P(sol) polarization free energy of solvation -34.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds