Wall clock time and date at job start Tue Mar 31 2020 05:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 119.99925 * 2 1 4 4 H 1.48497 * 109.46964 * 269.99748 * 3 2 1 5 5 H 1.48502 * 109.47035 * 29.99580 * 3 2 1 6 6 H 1.48499 * 109.47257 * 149.99655 * 3 2 1 7 7 C 1.37879 * 120.00465 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99452 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00258 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47127 * 180.02562 * 10 9 7 12 12 O 1.45202 * 109.46867 * 180.02562 * 11 10 9 13 13 C 1.34718 * 116.99571 * 179.97438 * 12 11 10 14 14 O 1.21483 * 120.00215 * 359.97438 * 13 12 11 15 15 C 1.47678 * 120.00049 * 179.97438 * 13 12 11 16 16 C 1.39689 * 120.10093 * 359.72690 * 15 13 12 17 17 C 1.37933 * 120.00262 * 179.71920 * 16 15 13 18 18 C 1.38378 * 120.22250 * 0.55425 * 17 16 15 19 19 Cl 1.73600 * 119.89760 * 179.69723 * 18 17 16 20 20 C 1.39125 * 120.20952 * 359.72130 * 18 17 16 21 21 N 1.39785 * 120.00691 * 180.02562 * 20 18 17 22 22 C 1.38580 * 119.98896 * 0.02562 * 20 18 17 23 23 H 0.96999 * 120.00061 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.47197 * 60.00848 * 9 7 2 25 25 H 1.09001 * 109.47328 * 300.00375 * 9 7 2 26 26 H 1.09001 * 109.47502 * 60.00512 * 10 9 7 27 27 H 1.09001 * 109.47289 * 300.00308 * 10 9 7 28 28 H 1.09001 * 109.47002 * 299.99574 * 11 10 9 29 29 H 1.08993 * 109.46955 * 60.00011 * 11 10 9 30 30 H 1.07995 * 119.99665 * 359.97108 * 16 15 13 31 31 H 1.07998 * 119.88893 * 180.27296 * 17 16 15 32 32 H 0.97005 * 119.99969 * 179.97438 * 21 20 18 33 33 H 0.97000 * 119.99983 * 359.97438 * 21 20 18 34 34 H 1.07996 * 120.10681 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6364 0.0010 11 6 5.5517 -2.6364 0.0022 12 8 6.0357 -4.0054 0.0015 13 6 7.3712 -4.1818 0.0019 14 8 8.1112 -3.2184 0.0024 15 6 7.9358 -5.5464 0.0018 16 6 7.0869 -6.6558 0.0070 17 6 7.6163 -7.9294 0.0010 18 6 8.9878 -8.1137 0.0014 19 17 9.6450 -9.7205 0.0018 20 6 9.8417 -7.0153 0.0020 21 7 11.2264 -7.2063 0.0018 22 6 9.3192 -5.7317 0.0027 23 1 -0.4850 0.8400 -0.0004 24 1 3.8746 -0.6801 0.8912 25 1 3.8753 -0.6803 -0.8888 26 1 3.6588 -3.1501 -0.8893 27 1 3.6579 -3.1505 0.8907 28 1 5.9157 -2.1223 -0.8873 29 1 5.9142 -2.1229 0.8927 30 1 6.0160 -6.5162 0.0116 31 1 6.9583 -8.7858 0.0006 32 1 11.8217 -6.4404 0.0018 33 1 11.5921 -8.1047 0.0017 34 1 9.9802 -4.8777 0.0036 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042238470.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:47 Heat of formation + Delta-G solvation = -82.738719 kcal Electronic energy + Delta-G solvation = -18563.023694 eV Core-core repulsion = 15293.092978 eV Total energy + Delta-G solvation = -3269.930716 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.61610 -39.36070 -36.88875 -36.46703 -35.04387 -34.06496 -31.90801 -31.32120 -29.21054 -27.61395 -24.79256 -22.84162 -22.79920 -20.93893 -20.24843 -18.24955 -17.61762 -17.02904 -16.81781 -16.39677 -16.38322 -15.69090 -14.58168 -14.46218 -14.24366 -14.17682 -13.98147 -13.34451 -12.75504 -12.63767 -12.44519 -12.12746 -11.99681 -11.87587 -11.27798 -11.14841 -11.05580 -10.96933 -10.67051 -10.45817 -10.02633 -9.82255 -9.73472 -9.26540 -9.25355 -8.57068 -8.04534 -6.07285 -4.06368 0.30302 1.07273 1.71679 2.39600 2.65958 3.29764 3.36949 3.37638 3.40761 3.44273 4.33767 4.42724 4.57528 4.82696 4.90997 5.06535 5.26011 5.39500 5.44582 5.45936 5.51929 5.81681 5.87787 6.00263 6.21254 6.32017 6.38144 6.62341 6.78265 6.86568 7.20461 7.22919 7.31886 7.71065 7.80305 8.49347 8.97052 9.54212 11.05860 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.043449 B = 0.002621 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.279096 B =10681.715640 C =11300.245195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.067 3.933 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.074 0.926 9 C -0.011 4.011 10 C -0.102 4.102 11 C 0.066 3.934 12 O -0.348 6.348 13 C 0.504 3.496 14 O -0.507 6.507 15 C -0.066 4.066 16 C -0.107 4.107 17 C -0.074 4.074 18 C -0.089 4.089 19 Cl -0.068 7.068 20 C 0.216 3.784 21 N -0.871 5.871 22 C -0.126 4.126 23 H 0.264 0.736 24 H 0.019 0.981 25 H 0.015 0.985 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.149 0.851 31 H 0.142 0.858 32 H 0.404 0.596 33 H 0.402 0.598 34 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.534 -18.147 0.033 28.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.706 3.294 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.559 4.559 8 H 0.092 0.908 9 C -0.048 4.048 10 C -0.139 4.139 11 C -0.007 4.007 12 O -0.264 6.264 13 C 0.348 3.652 14 O -0.397 6.397 15 C -0.068 4.068 16 C -0.127 4.127 17 C -0.093 4.093 18 C -0.120 4.120 19 Cl -0.039 7.039 20 C 0.110 3.890 21 N -0.411 5.411 22 C -0.149 4.149 23 H 0.074 0.926 24 H 0.037 0.963 25 H 0.033 0.967 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.167 0.833 31 H 0.160 0.840 32 H 0.233 0.767 33 H 0.232 0.768 34 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 22.586 -17.847 0.037 28.787 hybrid contribution 0.844 0.888 -0.023 1.225 sum 23.431 -16.960 0.014 28.925 Atomic orbital electron populations 1.69907 1.06284 1.26981 1.50847 1.25018 0.94757 0.99179 0.94468 0.86786 0.80383 0.83590 0.78593 1.20213 1.21295 1.18960 1.21052 0.89028 0.94672 1.51196 0.90770 1.19521 0.97540 0.91059 0.96696 1.21570 0.88594 1.00834 1.02922 1.23555 0.97128 0.77719 1.02256 1.86547 1.22291 1.34479 1.83084 1.21046 0.81614 0.89317 0.73196 1.90826 1.60760 1.42444 1.45624 1.19005 0.93065 0.90839 1.03888 1.21300 1.01020 0.90348 1.00063 1.20857 0.92243 0.98170 0.98010 1.20640 0.93541 0.84695 1.13166 1.98352 1.86146 1.22252 1.97199 1.17210 0.84820 0.91655 0.95283 1.42524 1.02575 1.11519 1.84510 1.20598 0.94201 0.95223 1.04872 0.92641 0.96259 0.96699 0.91438 0.91419 0.91363 0.91348 0.83280 0.83979 0.76696 0.76757 0.83733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.65 13.96 55.43 0.77 -26.88 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 21.58 27.47 -169.99 -4.67 16.91 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 7 C -0.52 -14.72 9.66 -34.44 -0.33 -15.05 16 8 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 9 C -0.01 -0.25 4.04 -27.89 -0.11 -0.36 16 10 C -0.10 -1.98 5.53 -26.73 -0.15 -2.12 16 11 C 0.07 1.13 5.48 37.16 0.20 1.34 16 12 O -0.35 -5.48 9.47 -40.54 -0.38 -5.86 16 13 C 0.50 7.52 7.90 34.59 0.27 7.79 16 14 O -0.51 -8.67 16.13 -19.25 -0.31 -8.98 16 15 C -0.07 -0.78 5.87 -105.00 -0.62 -1.40 16 16 C -0.11 -1.09 9.61 -39.15 -0.38 -1.46 16 17 C -0.07 -0.64 9.80 -39.64 -0.39 -1.03 16 18 C -0.09 -0.78 6.34 -39.20 -0.25 -1.03 16 19 Cl -0.07 -0.52 27.57 -51.86 -1.43 -1.95 16 20 C 0.22 1.90 6.75 -83.78 -0.57 1.34 16 21 N -0.87 -5.28 9.04 32.41 0.29 -4.98 16 22 C -0.13 -1.29 9.44 -38.96 -0.37 -1.66 16 23 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 24 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 25 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 26 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 27 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 29 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.15 1.43 7.60 -52.49 -0.40 1.03 16 31 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 32 H 0.40 1.73 8.84 -40.82 -0.36 1.37 16 33 H 0.40 2.06 7.49 -40.82 -0.31 1.75 16 34 H 0.14 1.41 7.65 -52.49 -0.40 1.01 16 LS Contribution 313.54 15.07 4.73 4.73 Total: -1.00 -31.87 313.54 -7.71 -39.58 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -3.93 Total: -0.76 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: -2.78 Total: -11.81 kcal Atomic # 7 Polarization: -32.93 SS G_CDS: 1.07 Total: -31.86 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: -0.69 Total: -14.84 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.67 Total: 16.91 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.43 Total: -1.95 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.87 -7.71 -39.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042238470.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.160 kcal (2) G-P(sol) polarization free energy of solvation -31.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds