Wall clock time and date at job start Tue Mar 31 2020 05:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42107 * 110.54111 * 2 1 4 4 O 1.42102 * 110.54223 * 136.75010 * 2 1 3 5 5 C 1.76200 * 104.45035 * 248.37826 * 2 1 3 6 6 C 1.38235 * 119.99568 * 269.72723 * 5 2 1 7 7 C 1.38240 * 120.00001 * 179.76503 * 6 5 2 8 8 C 1.38237 * 119.99230 * 0.48367 * 7 6 5 9 9 C 1.50707 * 119.99649 * 179.76804 * 8 7 6 10 10 N 1.46500 * 109.47019 * 270.02423 * 9 8 7 11 11 C 1.34785 * 119.99705 * 179.97438 * 10 9 8 12 12 O 1.21682 * 120.00012 * 0.02562 * 11 10 9 13 13 C 1.46376 * 119.99557 * 179.97438 * 11 10 9 14 14 H 1.08002 * 120.00017 * 359.97438 * 13 11 10 15 15 C 1.40048 * 119.99538 * 180.02562 * 13 11 10 16 16 N 1.30664 * 120.00054 * 359.97438 * 15 13 11 17 17 Si 1.86807 * 119.99614 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.47077 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.46796 * 120.00062 * 17 15 13 20 20 H 1.48500 * 109.46793 * 239.99425 * 17 15 13 21 21 C 1.38227 * 120.00617 * 359.79189 * 8 7 6 22 22 C 1.38231 * 120.00074 * 89.99637 * 5 2 1 23 23 H 1.09002 * 109.47124 * 171.62372 * 1 2 3 24 24 H 1.09001 * 109.46975 * 51.62493 * 1 2 3 25 25 H 1.09004 * 109.47147 * 291.62456 * 1 2 3 26 26 H 1.08000 * 120.00257 * 359.97438 * 6 5 2 27 27 H 1.07998 * 120.00425 * 180.25449 * 7 6 5 28 28 H 1.09008 * 109.47044 * 30.02344 * 9 8 7 29 29 H 1.08991 * 109.47296 * 150.02040 * 9 8 7 30 30 H 0.96998 * 120.00068 * 359.97438 * 10 9 8 31 31 H 0.97006 * 120.00133 * 180.02562 * 16 15 13 32 32 H 1.08001 * 120.00648 * 179.97438 * 21 8 7 33 33 H 1.07995 * 119.99970 * 0.02562 * 22 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3127 -0.9692 0.9117 5 6 2.2537 -0.6287 -1.5862 6 6 2.4317 -1.9877 -1.7659 7 6 2.7719 -2.4816 -3.0114 8 6 2.9439 -1.6153 -4.0749 9 6 3.3199 -2.1531 -5.4316 10 7 4.7793 -2.2004 -5.5508 11 6 5.3484 -2.6511 -6.6864 12 8 4.6500 -3.0183 -7.6128 13 6 6.8065 -2.6978 -6.8057 14 1 7.4263 -2.3708 -5.9839 15 6 7.3978 -3.1657 -7.9859 16 7 6.6479 -3.5609 -8.9802 17 14 9.2587 -3.2260 -8.1379 18 1 9.8743 -2.7275 -6.8819 19 1 9.6904 -4.6261 -8.3796 20 1 9.6905 -2.3719 -9.2733 21 6 2.7715 -0.2558 -3.8939 22 6 2.4261 0.2375 -2.6495 23 1 -0.3633 -1.0167 -0.1497 24 1 -0.3633 0.6380 -0.8057 25 1 -0.3634 0.3787 0.9554 26 1 2.3017 -2.6641 -0.9340 27 1 2.9069 -3.5437 -3.1528 28 1 2.9129 -3.1574 -5.5499 29 1 2.9130 -1.5027 -6.2058 30 1 5.3360 -1.9073 -4.8125 31 1 7.0574 -3.8853 -9.7976 32 1 2.9063 0.4211 -4.7246 33 1 2.2917 1.2997 -2.5080 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045174202.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:29 Heat of formation + Delta-G solvation = -83.428928 kcal Electronic energy + Delta-G solvation = -19052.857611 eV Core-core repulsion = 15784.940671 eV Total energy + Delta-G solvation = -3267.916940 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.50673 -37.31060 -37.23443 -36.14824 -33.94138 -32.45947 -31.12970 -30.97271 -29.83077 -27.05664 -25.16142 -22.93609 -21.77375 -19.76192 -19.23575 -18.02190 -17.40184 -16.43993 -16.25745 -15.55628 -15.23309 -15.16298 -14.66862 -14.24851 -13.93775 -13.68115 -13.56442 -13.54822 -13.19575 -12.91192 -12.40206 -12.29444 -12.18816 -11.75331 -11.61210 -11.35973 -11.20566 -11.18042 -10.92209 -10.71175 -10.50446 -10.23376 -9.33980 -9.11033 -8.90713 -7.68653 -7.63670 -6.24145 -4.69795 -0.18496 0.70779 1.24124 2.64374 3.10825 3.19165 3.23677 3.30173 3.74082 3.86899 4.08670 4.41946 4.51542 4.53728 4.75190 4.76226 4.81585 5.04749 5.26567 5.28925 5.30477 5.62354 5.64264 5.81852 5.97354 6.08866 6.08900 6.25275 6.60932 6.77403 7.39101 7.83158 7.97226 8.26601 8.97490 9.43122 10.52908 10.70815 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.036870 B = 0.003148 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.233240 B = 8893.548372 C = 9180.370696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.651 4.651 2 S 2.504 3.496 3 O -0.940 6.940 4 O -0.940 6.940 5 C -0.666 4.666 6 C -0.027 4.027 7 C -0.126 4.126 8 C -0.030 4.030 9 C 0.161 3.839 10 N -0.763 5.763 11 C 0.554 3.446 12 O -0.580 6.580 13 C -0.543 4.543 14 H 0.069 0.931 15 C 0.087 3.913 16 N -0.767 5.767 17 Si 0.909 3.091 18 H -0.263 1.263 19 H -0.276 1.276 20 H -0.276 1.276 21 C -0.126 4.126 22 C -0.027 4.027 23 H 0.131 0.869 24 H 0.131 0.869 25 H 0.129 0.871 26 H 0.140 0.860 27 H 0.135 0.865 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.382 0.618 31 H 0.268 0.732 32 H 0.135 0.865 33 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.428 6.450 16.273 21.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.800 4.800 2 S 2.684 3.316 3 O -0.937 6.937 4 O -0.937 6.937 5 C -0.754 4.754 6 C -0.046 4.046 7 C -0.145 4.145 8 C -0.031 4.031 9 C 0.036 3.964 10 N -0.419 5.419 11 C 0.359 3.641 12 O -0.462 6.462 13 C -0.580 4.580 14 H 0.087 0.913 15 C -0.133 4.133 16 N -0.396 5.396 17 Si 0.734 3.266 18 H -0.187 1.187 19 H -0.201 1.201 20 H -0.201 1.201 21 C -0.145 4.145 22 C -0.046 4.046 23 H 0.150 0.850 24 H 0.150 0.850 25 H 0.148 0.852 26 H 0.158 0.842 27 H 0.152 0.848 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.214 0.786 31 H 0.079 0.921 32 H 0.152 0.848 33 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -12.412 6.348 16.016 21.234 hybrid contribution 0.677 -0.199 -0.506 0.869 sum -11.735 6.149 15.510 20.398 Atomic orbital electron populations 1.30233 1.26094 1.12059 1.11654 1.04989 0.77654 0.74557 0.74397 1.93584 1.77248 1.36680 1.86222 1.93582 1.77250 1.61667 1.61236 1.30377 1.20240 1.03090 1.21663 1.20906 0.92977 0.93079 0.97620 1.21303 1.00337 1.00623 0.92254 1.20635 0.92410 0.93719 0.96297 1.19955 0.85697 1.00267 0.90468 1.46225 1.02995 1.73069 1.19641 1.18282 0.89170 0.76906 0.79768 1.90603 1.64397 1.52457 1.38782 1.20909 0.89774 1.45931 1.01408 0.91284 1.25719 0.99656 0.92937 0.94981 1.70025 1.36074 1.30187 1.03324 0.86290 0.82992 0.78359 0.78974 1.18724 1.20115 1.20122 1.21299 1.00317 0.95251 0.97650 1.20904 0.92990 0.99192 0.91497 0.85003 0.85003 0.85218 0.84234 0.84752 0.91949 0.91953 0.78608 0.92083 0.84755 0.84241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -2.73 10.80 101.05 1.09 -1.64 16 2 S 2.50 21.51 5.80 -107.50 -0.62 20.89 16 3 O -0.94 -11.10 17.13 -57.54 -0.99 -12.09 16 4 O -0.94 -11.10 17.12 -57.54 -0.98 -12.08 16 5 C -0.67 -7.03 5.66 -39.58 -0.22 -7.25 16 6 C -0.03 -0.30 9.47 -39.58 -0.37 -0.67 16 7 C -0.13 -1.61 9.70 -39.58 -0.38 -2.00 16 8 C -0.03 -0.43 5.25 -104.62 -0.55 -0.98 16 9 C 0.16 2.94 5.80 -5.19 -0.03 2.91 16 10 N -0.76 -16.72 5.54 -62.90 -0.35 -17.07 16 11 C 0.55 15.55 7.75 -12.98 -0.10 15.45 16 12 O -0.58 -18.50 15.02 5.20 0.08 -18.42 16 13 C -0.54 -15.25 9.54 -35.63 -0.34 -15.59 16 14 H 0.07 1.79 7.85 -52.49 -0.41 1.38 16 15 C 0.09 2.41 5.50 -17.37 -0.10 2.31 16 16 N -0.77 -22.82 11.83 55.55 0.66 -22.16 16 17 Si 0.91 20.04 29.56 -169.99 -5.02 15.02 16 18 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 19 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 20 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 21 C -0.13 -1.61 9.70 -39.58 -0.38 -2.00 16 22 C -0.03 -0.30 9.47 -39.58 -0.37 -0.67 16 23 H 0.13 0.39 8.14 -51.92 -0.42 -0.03 16 24 H 0.13 0.39 8.14 -51.92 -0.42 -0.03 16 25 H 0.13 0.35 8.14 -51.92 -0.42 -0.08 16 26 H 0.14 1.26 7.56 -52.49 -0.40 0.86 16 27 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 28 H 0.06 1.18 8.09 -51.92 -0.42 0.76 16 29 H 0.06 1.18 8.08 -51.93 -0.42 0.76 16 30 H 0.38 7.59 8.44 -40.82 -0.34 7.24 16 31 H 0.27 7.21 8.29 -40.82 -0.34 6.87 16 32 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 33 H 0.14 1.26 7.57 -52.49 -0.40 0.86 16 LS Contribution 308.38 15.07 4.65 4.65 Total: -1.00 -38.78 308.38 -7.99 -46.77 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -3.64 Total: 4.63 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: -1.77 Total: -10.12 kcal Atomic # 7 Polarization: -39.54 SS G_CDS: 0.31 Total: -39.23 kcal Atomic # 8 Polarization: -40.70 SS G_CDS: -1.89 Total: -42.59 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Atomic # 16 Polarization: 21.51 SS G_CDS: -0.62 Total: 20.89 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -38.78 -7.99 -46.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045174202.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.661 kcal (2) G-P(sol) polarization free energy of solvation -38.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds