Wall clock time and date at job start Tue Mar 31 2020 05:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 119.99826 * 2 1 4 4 H 1.48506 * 109.47451 * 270.00271 * 3 2 1 5 5 H 1.48504 * 109.47174 * 30.00059 * 3 2 1 6 6 H 1.48504 * 109.47239 * 150.00347 * 3 2 1 7 7 C 1.37877 * 120.00191 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99681 * 359.97438 * 7 2 1 9 9 C 1.50693 * 120.00145 * 179.97438 * 7 2 1 10 10 C 1.52995 * 109.47527 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47497 * 180.02562 * 10 9 7 12 12 O 1.45198 * 109.46978 * 180.02562 * 11 10 9 13 13 C 1.34718 * 116.99774 * 180.02562 * 12 11 10 14 14 O 1.21480 * 120.00172 * 0.27071 * 13 12 11 15 15 C 1.47666 * 120.00094 * 180.02562 * 13 12 11 16 16 C 1.39599 * 120.12450 * 359.72581 * 15 13 12 17 17 C 1.38564 * 119.77952 * 179.76738 * 16 15 13 18 18 N 1.39779 * 119.98246 * 180.22694 * 17 16 15 19 19 C 1.39055 * 120.03358 * 0.48389 * 17 16 15 20 20 C 1.38156 * 120.25479 * 359.76762 * 19 17 16 21 21 C 1.38171 * 120.22063 * 359.97438 * 20 19 17 22 22 Cl 1.73606 * 120.01798 * 179.97438 * 21 20 19 23 23 H 0.97004 * 120.00511 * 359.97438 * 1 2 3 24 24 H 1.09011 * 109.46895 * 59.99930 * 9 7 2 25 25 H 1.09003 * 109.47604 * 300.00479 * 9 7 2 26 26 H 1.09003 * 109.47145 * 59.99827 * 10 9 7 27 27 H 1.09003 * 109.47168 * 300.00867 * 10 9 7 28 28 H 1.09003 * 109.46945 * 60.00582 * 11 10 9 29 29 H 1.08998 * 109.47020 * 300.00289 * 11 10 9 30 30 H 1.08004 * 120.11025 * 359.97428 * 16 15 13 31 31 H 0.96995 * 119.99973 * 180.25760 * 18 17 16 32 32 H 0.97002 * 120.00142 * 0.25365 * 18 17 16 33 33 H 1.07998 * 119.86622 * 179.74005 * 19 17 16 34 34 H 1.08008 * 119.88914 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6364 -0.0010 11 6 5.5516 -2.6364 -0.0009 12 8 6.0356 -4.0054 -0.0014 13 6 7.3712 -4.1818 -0.0009 14 8 8.1112 -3.2184 0.0049 15 6 7.9356 -5.5463 -0.0019 16 6 7.0877 -6.6553 0.0023 17 6 7.6251 -7.9325 -0.0036 18 7 6.7800 -9.0459 -0.0041 19 6 9.0046 -8.1072 -0.0035 20 6 9.8451 -7.0107 -0.0024 21 6 9.3206 -5.7324 -0.0020 22 17 10.3816 -4.3583 0.0000 23 1 -0.4851 0.8400 0.0004 24 1 3.8752 -0.6803 0.8889 25 1 3.8746 -0.6799 -0.8911 26 1 3.6579 -3.1505 -0.8907 27 1 3.6585 -3.1501 0.8892 28 1 5.9149 -2.1226 0.8891 29 1 5.9149 -2.1226 -0.8909 30 1 6.0164 -6.5182 0.0068 31 1 7.1559 -9.9400 -0.0044 32 1 5.8176 -8.9243 -0.0041 33 1 9.4205 -9.1039 -0.0038 34 1 10.9157 -7.1532 -0.0020 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049579285.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:06 Heat of formation + Delta-G solvation = -93.538822 kcal Electronic energy + Delta-G solvation = -18849.957484 eV Core-core repulsion = 15579.558440 eV Total energy + Delta-G solvation = -3270.399044 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.63033 -40.10897 -37.88429 -37.33121 -35.93012 -35.21028 -33.90352 -32.52357 -29.51266 -29.40248 -25.97044 -24.52946 -23.35078 -22.12017 -21.78813 -19.21136 -19.01834 -18.24446 -17.66749 -17.53384 -17.35181 -16.45321 -16.24311 -15.79408 -15.35090 -15.00241 -14.80311 -14.63990 -14.39877 -13.85438 -13.75897 -13.29274 -13.06263 -12.84783 -12.63250 -12.58820 -12.49863 -12.04482 -11.89720 -11.76467 -11.41045 -11.36639 -11.20842 -10.94680 -10.77939 -10.19976 -8.52635 -8.30831 -6.35594 -0.43763 0.30155 1.23455 1.36561 1.38012 1.49810 1.49975 1.58761 2.35264 2.67156 2.89265 3.04425 3.49976 3.76647 4.00393 4.02719 4.12118 4.24335 4.32161 4.38735 4.68069 4.73701 4.83045 4.88968 4.95925 5.11449 5.16250 5.30359 5.47445 5.48371 5.53797 5.61751 6.25219 6.46078 6.65504 6.72485 6.96597 7.28944 8.85661 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.024418 B = 0.003352 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.424613 B = 8351.493856 C = 9472.167458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.006 3.994 3 Si 0.948 3.052 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.247 1.247 7 C -0.533 4.533 8 H 0.037 0.963 9 C -0.010 4.010 10 C -0.090 4.090 11 C 0.076 3.924 12 O -0.353 6.353 13 C 0.493 3.507 14 O -0.511 6.511 15 C -0.088 4.088 16 C -0.141 4.141 17 C 0.214 3.786 18 N -0.859 5.859 19 C -0.143 4.143 20 C -0.068 4.068 21 C -0.062 4.062 22 Cl -0.063 7.063 23 H 0.267 0.733 24 H 0.025 0.975 25 H 0.024 0.976 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.145 0.855 31 H 0.415 0.585 32 H 0.409 0.591 33 H 0.173 0.827 34 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.925 -21.043 -0.009 30.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.191 4.191 3 Si 0.771 3.229 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.171 1.171 7 C -0.571 4.571 8 H 0.055 0.945 9 C -0.047 4.047 10 C -0.128 4.128 11 C 0.003 3.997 12 O -0.270 6.270 13 C 0.338 3.662 14 O -0.401 6.401 15 C -0.090 4.090 16 C -0.165 4.165 17 C 0.107 3.893 18 N -0.399 5.399 19 C -0.166 4.166 20 C -0.087 4.087 21 C -0.091 4.091 22 Cl -0.034 7.034 23 H 0.076 0.924 24 H 0.043 0.957 25 H 0.042 0.958 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.163 0.837 31 H 0.246 0.754 32 H 0.239 0.761 33 H 0.190 0.810 34 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 22.056 -20.497 -0.004 30.110 hybrid contribution -0.519 1.093 -0.019 1.210 sum 21.537 -19.404 -0.023 28.989 Atomic orbital electron populations 1.70053 1.08229 1.28254 1.52420 1.25978 0.95624 1.03439 0.94041 0.85688 0.79531 0.78343 0.79303 1.19085 1.20834 1.17074 1.21393 0.91626 0.93403 1.50690 0.94474 1.19450 0.94368 0.93719 0.97166 1.21310 0.90458 0.98393 1.02643 1.23203 0.95217 0.78786 1.02515 1.86510 1.23404 1.33323 1.83743 1.21560 0.80941 0.90507 0.73188 1.90894 1.60361 1.43186 1.45644 1.18670 0.92401 0.89982 1.07982 1.20936 1.00444 0.90047 1.05043 1.17794 0.91227 0.87490 0.92827 1.42513 1.08586 1.05617 1.83146 1.21165 0.90457 1.00573 1.04383 1.21050 1.02079 0.88324 0.97263 1.20940 0.88975 0.90301 1.08866 1.98390 1.64511 1.43718 1.96737 0.92377 0.95698 0.95791 0.91710 0.91740 0.91198 0.91127 0.83725 0.75414 0.76136 0.80956 0.81717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.72 13.96 21.45 0.30 -59.42 16 2 C 0.01 0.37 5.47 84.65 0.46 0.83 16 3 Si 0.95 44.56 27.47 68.60 1.88 46.45 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 6 H -0.25 -10.84 6.54 99.48 0.65 -10.19 16 7 C -0.53 -30.88 9.66 25.60 0.25 -30.63 16 8 H 0.04 2.34 7.99 -2.91 -0.02 2.32 16 9 C -0.01 -0.45 4.04 29.84 0.12 -0.33 16 10 C -0.09 -3.58 5.53 30.59 0.17 -3.41 16 11 C 0.08 2.66 5.48 71.98 0.39 3.05 16 12 O -0.35 -11.60 9.47 -56.28 -0.53 -12.14 16 13 C 0.49 15.82 7.89 70.31 0.55 16.38 16 14 O -0.51 -18.61 13.75 19.90 0.27 -18.33 16 15 C -0.09 -2.24 5.87 -20.10 -0.12 -2.35 16 16 C -0.14 -2.80 9.46 22.68 0.21 -2.58 16 17 C 0.21 2.84 6.75 38.15 0.26 3.09 16 18 N -0.86 -5.91 9.09 -51.43 -0.47 -6.37 16 19 C -0.14 -1.50 9.88 22.45 0.22 -1.28 16 20 C -0.07 -0.98 9.81 22.23 0.22 -0.76 16 21 C -0.06 -1.40 6.35 22.62 0.14 -1.25 16 22 Cl -0.06 -1.63 26.01 -2.72 -0.07 -1.71 16 23 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 24 H 0.02 1.14 7.20 -2.38 -0.02 1.12 16 25 H 0.02 1.08 7.57 -2.39 -0.02 1.06 16 26 H 0.06 2.55 8.14 -2.39 -0.02 2.54 16 27 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 28 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.14 2.83 7.61 -2.91 -0.02 2.80 16 31 H 0.41 0.70 8.84 -92.71 -0.82 -0.12 16 32 H 0.41 2.39 8.84 -92.71 -0.82 1.57 16 33 H 0.17 0.51 8.06 -2.91 -0.02 0.48 16 34 H 0.17 1.52 8.06 -2.91 -0.02 1.49 16 Total: -1.00 -72.80 311.72 3.72 -69.08 By element: Atomic # 1 Polarization: 2.24 SS G_CDS: -0.55 Total: 1.69 kcal Atomic # 6 Polarization: -22.13 SS G_CDS: 2.89 Total: -19.25 kcal Atomic # 7 Polarization: -65.63 SS G_CDS: -0.17 Total: -65.79 kcal Atomic # 8 Polarization: -30.21 SS G_CDS: -0.26 Total: -30.47 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.88 Total: 46.45 kcal Atomic # 17 Polarization: -1.63 SS G_CDS: -0.07 Total: -1.71 kcal Total: -72.80 3.72 -69.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049579285.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.461 kcal (2) G-P(sol) polarization free energy of solvation -72.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds