Wall clock time and date at job start Tue Mar 31 2020 05:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00356 * 2 1 4 4 H 1.48499 * 109.46973 * 270.00353 * 3 2 1 5 5 H 1.48504 * 109.46853 * 30.00231 * 3 2 1 6 6 H 1.48499 * 109.47317 * 150.00192 * 3 2 1 7 7 C 1.37882 * 119.99545 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99405 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00128 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46981 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47076 * 179.97438 * 10 9 7 12 12 O 1.45200 * 109.47368 * 179.97438 * 11 10 9 13 13 C 1.34773 * 117.00211 * 180.02562 * 12 11 10 14 14 O 1.21529 * 120.00334 * 359.97438 * 13 12 11 15 15 C 1.47226 * 119.99797 * 180.02562 * 13 12 11 16 16 C 1.39842 * 120.20376 * 5.88415 * 15 13 12 17 17 C 1.37658 * 119.93366 * 180.24932 * 16 15 13 18 18 C 1.38784 * 120.34801 * 359.47840 * 17 16 15 19 19 Cl 1.73602 * 119.79883 * 180.24931 * 18 17 16 20 20 C 1.38106 * 120.40787 * 0.27693 * 18 17 16 21 21 C 1.38890 * 120.05589 * 359.97215 * 20 18 17 22 22 N 1.38830 * 120.17224 * 180.02562 * 21 20 18 23 23 H 0.96998 * 119.99768 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47054 * 60.00701 * 9 7 2 25 25 H 1.09001 * 109.47200 * 300.00072 * 9 7 2 26 26 H 1.09004 * 109.46926 * 60.00075 * 10 9 7 27 27 H 1.09001 * 109.47175 * 300.00041 * 10 9 7 28 28 H 1.09004 * 109.47025 * 60.00328 * 11 10 9 29 29 H 1.08993 * 109.47418 * 300.00422 * 11 10 9 30 30 H 1.08002 * 120.03271 * 0.02572 * 16 15 13 31 31 H 1.07999 * 119.82520 * 179.74688 * 17 16 15 32 32 H 1.07999 * 119.96930 * 180.02562 * 20 18 17 33 33 H 0.97006 * 120.00262 * 354.37792 * 22 21 20 34 34 H 0.97003 * 120.00383 * 174.37571 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4801 -4.9871 0.0001 12 8 2.4236 -6.0908 -0.0005 13 6 1.9084 -7.3362 -0.0006 14 8 0.7036 -7.4954 0.0003 15 6 2.8052 -8.5038 -0.0006 16 6 4.1872 -8.3294 0.1233 17 6 5.0210 -9.4247 0.1175 18 6 4.4969 -10.7043 -0.0001 19 17 5.5611 -12.0759 0.0006 20 6 3.1339 -10.8934 -0.1182 21 6 2.2775 -9.7999 -0.1194 22 7 0.9070 -9.9872 -0.2375 23 1 -0.4850 0.8400 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8897 26 1 2.8718 -3.6044 0.8895 27 1 2.8718 -3.6044 -0.8905 28 1 0.8532 -5.0451 -0.8897 29 1 0.8537 -5.0446 0.8902 30 1 4.6001 -7.3361 0.2199 31 1 6.0883 -9.2877 0.2092 32 1 2.7337 -11.8923 -0.2089 33 1 0.5510 -10.8746 -0.4012 34 1 0.3053 -9.2307 -0.1564 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049579294.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:37 Heat of formation + Delta-G solvation = -83.569574 kcal Electronic energy + Delta-G solvation = -18718.323373 eV Core-core repulsion = 15448.356628 eV Total energy + Delta-G solvation = -3269.966745 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.74009 -39.11567 -37.05157 -36.46063 -34.68115 -33.97601 -31.91193 -31.23602 -29.20620 -27.12859 -24.50246 -23.26805 -22.51783 -21.08921 -20.34062 -18.04619 -17.51833 -17.00639 -16.90278 -16.34406 -16.14571 -15.17849 -14.56657 -14.47448 -14.34321 -14.29840 -13.73438 -13.38621 -12.67443 -12.42951 -12.20276 -12.08265 -12.03141 -11.83563 -11.28386 -10.99142 -10.81228 -10.68137 -10.66949 -10.44487 -10.39472 -9.75880 -9.53561 -9.20670 -9.18522 -8.40440 -7.99146 -6.05311 -4.08344 0.40793 1.19272 1.71414 2.40564 2.81835 3.30106 3.36371 3.39863 3.49018 3.58889 4.41892 4.43802 4.71696 4.83001 4.94340 5.11838 5.30817 5.47081 5.54054 5.57104 5.62891 5.90218 5.95130 5.99514 6.25401 6.42920 6.51019 6.75548 6.94645 7.09420 7.57683 7.59166 7.68745 7.86479 7.92998 8.33889 8.97919 9.56084 11.06171 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.034917 B = 0.002663 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.712448 B =10512.337417 C =11284.829111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.522 4.522 8 H 0.058 0.942 9 C 0.024 3.976 10 C -0.109 4.109 11 C 0.069 3.931 12 O -0.349 6.349 13 C 0.519 3.481 14 O -0.527 6.527 15 C -0.215 4.215 16 C 0.006 3.994 17 C -0.191 4.191 18 C 0.050 3.950 19 Cl -0.066 7.066 20 C -0.212 4.212 21 C 0.296 3.704 22 N -0.850 5.850 23 H 0.262 0.738 24 H 0.019 0.981 25 H 0.019 0.981 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.150 0.850 31 H 0.138 0.862 32 H 0.139 0.861 33 H 0.397 0.603 34 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.616 -24.268 -0.164 25.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.560 4.560 8 H 0.076 0.924 9 C -0.013 4.013 10 C -0.147 4.147 11 C -0.004 4.004 12 O -0.265 6.265 13 C 0.367 3.633 14 O -0.418 6.418 15 C -0.221 4.221 16 C -0.013 4.013 17 C -0.212 4.212 18 C 0.022 3.978 19 Cl -0.037 7.037 20 C -0.236 4.236 21 C 0.183 3.817 22 N -0.396 5.396 23 H 0.071 0.929 24 H 0.038 0.962 25 H 0.038 0.962 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.167 0.833 31 H 0.156 0.844 32 H 0.157 0.843 33 H 0.225 0.775 34 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 7.142 -24.179 -0.153 25.212 hybrid contribution -0.049 0.702 -0.054 0.706 sum 7.093 -23.477 -0.206 24.526 Atomic orbital electron populations 1.69964 1.06102 1.26786 1.50538 1.25034 0.94883 0.99393 0.95180 0.86540 0.79815 0.83195 0.78150 1.20602 1.21194 1.19784 1.21170 0.93133 0.90657 1.51016 0.92400 1.19050 0.93832 0.90738 0.97676 1.21776 0.99973 0.90883 1.02054 1.23555 0.91193 0.83385 1.02269 1.86556 1.42202 1.14631 1.83064 1.20824 0.86542 0.83812 0.72143 1.90453 1.16736 1.85817 1.48836 1.18672 0.93828 0.89471 1.20165 1.21268 0.90833 0.99676 0.89538 1.20760 1.00975 0.89938 1.09533 1.20887 0.90476 0.88592 0.97867 1.98385 1.65374 1.43484 1.96465 1.20350 0.91243 0.98282 1.13722 1.17478 0.85165 0.91108 0.87936 1.43495 1.04056 1.14790 1.77276 0.92881 0.96238 0.96233 0.92059 0.92057 0.91387 0.91357 0.83268 0.84374 0.84335 0.77529 0.73659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.68 13.29 55.43 0.74 -25.95 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.52 -14.56 9.11 -34.44 -0.31 -14.87 16 8 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.11 -2.22 5.53 -26.73 -0.15 -2.36 16 11 C 0.07 1.24 5.48 37.16 0.20 1.44 16 12 O -0.35 -5.68 9.49 -40.69 -0.39 -6.07 16 13 C 0.52 7.90 7.87 34.38 0.27 8.17 16 14 O -0.53 -8.67 13.43 -19.29 -0.26 -8.93 16 15 C -0.21 -2.67 5.89 -104.81 -0.62 -3.29 16 16 C 0.01 0.06 9.61 -39.19 -0.38 -0.32 16 17 C -0.19 -1.76 9.80 -39.59 -0.39 -2.15 16 18 C 0.05 0.46 6.32 -39.43 -0.25 0.21 16 19 Cl -0.07 -0.54 28.94 -51.86 -1.50 -2.05 16 20 C -0.21 -1.93 9.65 -39.39 -0.38 -2.32 16 21 C 0.30 3.21 6.76 -83.62 -0.57 2.65 16 22 N -0.85 -8.24 8.93 32.55 0.29 -7.95 16 23 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 24 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 28 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.15 1.46 7.62 -52.49 -0.40 1.06 16 31 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 32 H 0.14 0.97 8.06 -52.49 -0.42 0.54 16 33 H 0.40 2.57 8.84 -40.82 -0.36 2.21 16 34 H 0.42 4.89 5.34 -40.95 -0.22 4.68 16 LS Contribution 314.20 15.07 4.73 4.73 Total: -1.00 -30.49 314.20 -8.11 -38.59 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -3.90 Total: 2.06 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: -2.80 Total: -10.86 kcal Atomic # 7 Polarization: -34.92 SS G_CDS: 1.03 Total: -33.89 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -0.65 Total: -14.99 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.50 Total: -2.05 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.49 -8.11 -38.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049579294.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.975 kcal (2) G-P(sol) polarization free energy of solvation -30.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds