Wall clock time and date at job start Tue Mar 31 2020 06:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47258 * 2 1 4 4 H 1.08998 * 109.46991 * 305.54790 * 3 2 1 5 5 C 1.50703 * 109.46993 * 185.55161 * 3 2 1 6 6 H 1.07999 * 119.99715 * 245.60397 * 5 3 2 7 7 C 1.37879 * 120.00117 * 65.60375 * 5 3 2 8 8 N 1.31512 * 119.99978 * 196.28070 * 7 5 3 9 9 Si 1.86805 * 119.99966 * 16.28830 * 7 5 3 10 10 H 1.48497 * 109.46898 * 179.97438 * 9 7 5 11 11 H 1.48499 * 109.46827 * 299.99551 * 9 7 5 12 12 H 1.48494 * 109.47116 * 59.99840 * 9 7 5 13 13 N 1.46499 * 109.47140 * 65.55383 * 3 2 1 14 14 C 1.34781 * 119.99694 * 275.00048 * 13 3 2 15 15 O 1.21588 * 120.00011 * 359.97438 * 14 13 3 16 16 C 1.47602 * 119.99879 * 180.02562 * 14 13 3 17 17 C 1.39742 * 120.08483 * 359.71895 * 16 14 13 18 18 C 1.37709 * 119.93208 * 179.76762 * 17 16 14 19 19 C 1.38975 * 120.09834 * 0.51071 * 18 17 16 20 20 O 1.35741 * 119.91220 * 179.71969 * 19 18 17 21 21 C 1.39071 * 120.17348 * 359.74767 * 19 18 17 22 22 Cl 1.73601 * 119.96703 * 179.97438 * 21 19 18 23 23 C 1.37820 * 120.06584 * 359.97438 * 21 19 18 24 24 H 1.08999 * 109.47111 * 300.00221 * 1 2 3 25 25 H 1.09006 * 109.47148 * 60.00076 * 1 2 3 26 26 H 1.08996 * 109.47553 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47111 * 239.99779 * 2 1 3 28 28 H 1.09000 * 109.47249 * 120.00370 * 2 1 3 29 29 H 0.97001 * 119.99819 * 354.83996 * 8 7 5 30 30 H 0.96993 * 120.00114 * 95.00036 * 13 3 2 31 31 H 1.08001 * 120.03011 * 0.02562 * 17 16 14 32 32 H 1.07996 * 119.94992 * 180.25439 * 18 17 16 33 33 H 0.96703 * 113.99599 * 270.02700 * 20 19 18 34 34 H 1.07999 * 120.05120 * 180.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5978 1.9842 -0.8361 5 6 3.5407 1.4446 -0.1375 6 1 4.1567 1.8041 0.6736 7 6 4.1273 0.9878 -1.2986 8 7 5.4073 0.6860 -1.3140 9 14 3.1041 0.7977 -2.8498 10 1 3.9637 0.2944 -3.9512 11 1 2.0025 -0.1666 -2.6010 12 1 2.5329 2.1144 -3.2305 13 7 1.6639 2.0934 1.2574 14 6 0.4476 2.6600 1.3854 15 8 -0.3372 2.6312 0.4571 16 6 0.0689 3.3163 2.6520 17 6 0.9677 3.3462 3.7216 18 6 0.6128 3.9636 4.9003 19 6 -0.6415 4.5475 5.0311 20 8 -0.9895 5.1501 6.1966 21 6 -1.5414 4.5155 3.9712 22 17 -3.1071 5.2460 4.1406 23 6 -1.1914 3.9045 2.7865 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 5.9549 0.8550 -0.5314 30 1 2.2901 2.1167 1.9977 31 1 1.9412 2.8892 3.6225 32 1 1.3088 3.9905 5.7257 33 1 -1.4150 4.5593 6.8330 34 1 -1.8902 3.8802 1.9634 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054177608.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:06 Heat of formation + Delta-G solvation = -67.002741 kcal Electronic energy + Delta-G solvation = -19719.093935 eV Core-core repulsion = 16449.845582 eV Total energy + Delta-G solvation = -3269.248353 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.34725 -39.02312 -36.87682 -36.56009 -35.31285 -32.61946 -31.75128 -31.03625 -29.87057 -27.22160 -23.88647 -23.04103 -22.33415 -20.83634 -19.70157 -18.85160 -18.29155 -17.03332 -16.38247 -15.79215 -15.39659 -15.19278 -14.77257 -14.08741 -14.04412 -13.42333 -13.24753 -12.94748 -12.61986 -12.53122 -12.33672 -12.27934 -11.85250 -11.49487 -11.37963 -10.95414 -10.81976 -10.73018 -10.47897 -9.93504 -9.67222 -9.39456 -9.18294 -9.09868 -8.85759 -8.39059 -8.18301 -6.62846 -4.27501 0.51860 0.92462 1.86858 2.81539 3.35479 3.42381 3.55985 3.69953 3.78239 3.85468 4.37988 4.51941 4.86296 4.92606 5.04330 5.12157 5.23958 5.55988 5.80786 5.90559 6.02790 6.05276 6.05546 6.22893 6.30365 6.64047 6.75180 6.88349 6.99039 7.21396 7.28385 7.32119 7.57137 8.17693 8.34362 8.62085 8.84306 9.41815 10.78063 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.030359 B = 0.004112 C = 0.003826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.061783 B = 6807.337568 C = 7316.791737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.140 4.140 3 C 0.246 3.754 4 H 0.044 0.956 5 C -0.619 4.619 6 H 0.062 0.938 7 C 0.040 3.960 8 N -0.897 5.897 9 Si 1.039 2.961 10 H -0.283 1.283 11 H -0.268 1.268 12 H -0.280 1.280 13 N -0.692 5.692 14 C 0.543 3.457 15 O -0.542 6.542 16 C -0.119 4.119 17 C -0.068 4.068 18 C -0.139 4.139 19 C 0.131 3.869 20 O -0.487 6.487 21 C -0.072 4.072 22 Cl -0.057 7.057 23 C -0.042 4.042 24 H 0.048 0.952 25 H 0.052 0.948 26 H 0.031 0.969 27 H 0.070 0.930 28 H 0.051 0.949 29 H 0.269 0.731 30 H 0.392 0.608 31 H 0.140 0.860 32 H 0.143 0.857 33 H 0.394 0.606 34 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.189 4.918 13.984 19.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.178 4.178 3 C 0.143 3.857 4 H 0.062 0.938 5 C -0.656 4.656 6 H 0.080 0.920 7 C -0.166 4.166 8 N -0.530 5.530 9 Si 0.867 3.133 10 H -0.209 1.209 11 H -0.194 1.194 12 H -0.206 1.206 13 N -0.339 5.339 14 C 0.329 3.671 15 O -0.421 6.421 16 C -0.122 4.122 17 C -0.087 4.087 18 C -0.158 4.158 19 C 0.085 3.915 20 O -0.297 6.297 21 C -0.100 4.100 22 Cl -0.028 7.028 23 C -0.062 4.062 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.050 0.950 27 H 0.089 0.911 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.226 0.774 31 H 0.158 0.842 32 H 0.161 0.839 33 H 0.251 0.749 34 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -12.527 4.912 11.472 17.683 hybrid contribution 0.018 0.275 2.369 2.385 sum -12.510 5.187 13.841 19.364 Atomic orbital electron populations 1.21894 0.97345 0.98990 1.01968 1.22366 0.93838 0.99625 1.01991 1.19121 0.95961 0.88637 0.81947 0.93824 1.22076 0.89554 1.49768 1.04249 0.92026 1.25675 0.97521 0.92276 1.01169 1.70881 1.07059 1.40736 1.34301 0.84125 0.75520 0.77786 0.75882 1.20876 1.19435 1.20555 1.46217 1.14127 1.55300 1.18291 1.17999 0.83090 0.79378 0.86667 1.90760 1.50940 1.60012 1.40431 1.20269 0.94721 1.01638 0.95586 1.21417 0.99355 0.96239 0.91651 1.21309 0.96159 0.98950 0.99386 1.18363 0.92082 0.94592 0.86481 1.84793 1.81108 1.38625 1.25215 1.21262 0.88651 1.03405 0.96651 1.98371 1.25032 1.81571 1.97804 1.21109 0.96015 0.93191 0.95843 0.93341 0.92936 0.94975 0.91131 0.93011 0.92081 0.77355 0.84205 0.83886 0.74905 0.83140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 8.53 37.15 0.32 -2.53 16 2 C -0.14 -3.02 5.27 -26.73 -0.14 -3.16 16 3 C 0.25 5.69 1.82 -69.08 -0.13 5.57 16 4 H 0.04 1.10 6.25 -51.93 -0.32 0.78 16 5 C -0.62 -16.21 9.01 -34.44 -0.31 -16.53 16 6 H 0.06 1.68 7.96 -52.49 -0.42 1.26 16 7 C 0.04 1.11 5.32 -17.82 -0.09 1.02 16 8 N -0.90 -26.18 13.70 55.43 0.76 -25.42 16 9 Si 1.04 24.58 26.27 -169.99 -4.47 20.12 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.27 -5.90 5.67 56.52 0.32 -5.58 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 N -0.69 -13.37 4.98 -55.95 -0.28 -13.65 16 14 C 0.54 10.05 6.36 -12.44 -0.08 9.97 16 15 O -0.54 -11.56 13.48 5.29 0.07 -11.49 16 16 C -0.12 -1.73 5.87 -104.96 -0.62 -2.35 16 17 C -0.07 -0.80 9.53 -39.21 -0.37 -1.17 16 18 C -0.14 -1.41 9.97 -39.50 -0.39 -1.80 16 19 C 0.13 1.41 6.70 -39.00 -0.26 1.14 16 20 O -0.49 -4.38 12.94 -18.93 -0.24 -4.62 16 21 C -0.07 -0.87 6.32 -39.43 -0.25 -1.12 16 22 Cl -0.06 -0.63 28.49 -51.86 -1.48 -2.11 16 23 C -0.04 -0.58 9.36 -39.18 -0.37 -0.94 16 24 H 0.05 0.94 5.63 -51.93 -0.29 0.65 16 25 H 0.05 1.08 7.88 -51.93 -0.41 0.67 16 26 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 1.60 4.74 -51.93 -0.25 1.36 16 28 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.27 7.76 8.73 -40.82 -0.36 7.40 16 30 H 0.39 6.63 6.55 -40.82 -0.27 6.36 16 31 H 0.14 1.45 6.39 -52.49 -0.34 1.12 16 32 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 33 H 0.39 1.70 9.06 45.56 0.41 2.12 16 34 H 0.15 2.12 7.64 -52.49 -0.40 1.72 16 LS Contribution 298.97 15.07 4.51 4.51 Total: -1.00 -31.06 298.97 -6.61 -37.67 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -2.78 Total: 6.91 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: -2.70 Total: -11.91 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 0.48 Total: -39.07 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: -0.17 Total: -16.11 kcal Atomic # 14 Polarization: 24.58 SS G_CDS: -4.47 Total: 20.12 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.48 Total: -2.11 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.06 -6.61 -37.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054177608.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.332 kcal (2) G-P(sol) polarization free energy of solvation -31.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds