Wall clock time and date at job start Tue Mar 31 2020 05:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00164 * 2 1 4 4 H 1.48496 * 109.47127 * 269.99780 * 3 2 1 5 5 H 1.48492 * 109.47264 * 30.00145 * 3 2 1 6 6 H 1.48509 * 109.47208 * 150.00200 * 3 2 1 7 7 C 1.37881 * 120.00040 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99294 * 0.02562 * 7 2 1 9 9 C 1.50691 * 120.00253 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47425 * 180.02562 * 9 7 2 11 11 S 1.81400 * 109.47711 * 179.97438 * 10 9 7 12 12 C 1.81400 * 103.00218 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.46859 * 179.97438 * 12 11 10 14 14 O 1.21286 * 120.00017 * 0.02562 * 13 12 11 15 15 N 1.34777 * 120.00051 * 180.02562 * 13 12 11 16 16 C 1.40027 * 120.00369 * 185.27480 * 15 13 12 17 17 C 1.38847 * 120.04684 * 213.58635 * 16 15 13 18 18 C 1.38109 * 119.95334 * 180.21249 * 17 16 15 19 19 C 1.38478 * 120.04911 * 359.51280 * 18 17 16 20 20 F 1.35094 * 119.96019 * 180.25413 * 19 18 17 21 21 C 1.38479 * 120.08592 * 0.23483 * 19 18 17 22 22 C 1.38115 * 120.04275 * 359.97438 * 21 19 18 23 23 H 0.97002 * 119.99753 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47021 * 60.00501 * 9 7 2 25 25 H 1.08997 * 109.47565 * 300.00328 * 9 7 2 26 26 H 1.09005 * 109.46951 * 59.99773 * 10 9 7 27 27 H 1.08998 * 109.47332 * 300.00289 * 10 9 7 28 28 H 1.09000 * 109.46366 * 60.00591 * 12 11 10 29 29 H 1.08990 * 109.47357 * 300.00277 * 12 11 10 30 30 H 0.97000 * 119.99433 * 5.27960 * 15 13 12 31 31 H 1.08000 * 120.02173 * 359.97438 * 17 16 15 32 32 H 1.08001 * 119.98016 * 179.78907 * 18 17 16 33 33 H 1.07997 * 119.97696 * 180.02562 * 21 19 18 34 34 H 1.08003 * 120.02057 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 0.0001 11 16 5.8355 -2.6368 -0.0014 12 6 6.2435 -4.4043 -0.0003 13 6 7.7408 -4.5742 -0.0020 14 8 8.4618 -3.5988 -0.0033 15 7 8.2789 -5.8099 -0.0020 16 6 9.6657 -5.9698 0.1079 17 6 10.2984 -7.0191 -0.5451 18 6 11.6657 -7.1776 -0.4318 19 6 12.4069 -6.2850 0.3241 20 9 13.7449 -6.4387 0.4295 21 6 11.7784 -5.2347 0.9719 22 6 10.4107 -5.0753 0.8646 23 1 -0.4850 0.8401 0.0004 24 1 3.8751 -0.6798 0.8895 25 1 3.8745 -0.6809 -0.8904 26 1 3.6577 -3.1507 -0.8897 27 1 3.6585 -3.1503 0.8903 28 1 5.8238 -4.8745 -0.8896 29 1 5.8252 -4.8732 0.8903 30 1 7.7054 -6.5885 -0.0783 31 1 9.7212 -7.7131 -1.1381 32 1 12.1578 -7.9956 -0.9368 33 1 12.3583 -4.5394 1.5607 34 1 9.9210 -4.2558 1.3697 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058262886.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:03 Heat of formation + Delta-G solvation = -58.292406 kcal Electronic energy + Delta-G solvation = -18164.064518 eV Core-core repulsion = 14909.610369 eV Total energy + Delta-G solvation = -3254.454149 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.078 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.15157 -40.80304 -38.59363 -35.00144 -33.74447 -31.53446 -31.29101 -30.98650 -28.58902 -25.58569 -23.74864 -22.97313 -21.17508 -20.59646 -18.39462 -17.80985 -17.47297 -16.99854 -16.41699 -15.84640 -15.68269 -15.63805 -14.74743 -14.38588 -14.19045 -14.09847 -13.90045 -13.59617 -13.37672 -13.02747 -12.77293 -12.69072 -12.56080 -11.77292 -11.53677 -11.19047 -10.63745 -10.35050 -10.22553 -10.06941 -9.98371 -9.57525 -9.48224 -9.20072 -8.61874 -8.41734 -7.32278 -6.13065 -4.13372 0.69385 0.85622 1.66357 2.24291 2.73153 2.97550 3.26470 3.29566 3.37020 3.42794 3.95572 4.26811 4.39949 4.43907 4.48874 4.82915 4.86340 4.97349 5.06771 5.16494 5.21133 5.51151 5.73323 5.80456 5.83218 5.87992 5.92240 6.03251 6.48172 6.56016 6.91816 7.07804 7.19790 7.63095 7.74767 8.39771 8.87965 9.47673 10.99487 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.052612 B = 0.002520 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.065515 B =11109.951370 C =11537.886779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.071 3.929 3 Si 0.878 3.122 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.521 4.521 8 H 0.074 0.926 9 C 0.003 3.997 10 C -0.068 4.068 11 S -0.216 6.216 12 C -0.131 4.131 13 C 0.532 3.468 14 O -0.491 6.491 15 N -0.675 5.675 16 C 0.143 3.857 17 C -0.119 4.119 18 C -0.134 4.134 19 C 0.078 3.922 20 F -0.141 7.141 21 C -0.131 4.131 22 C -0.093 4.093 23 H 0.265 0.735 24 H 0.027 0.973 25 H 0.023 0.977 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.111 0.889 29 H 0.112 0.888 30 H 0.414 0.586 31 H 0.137 0.863 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.155 -17.313 0.430 27.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.131 4.131 3 Si 0.705 3.295 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.561 4.561 8 H 0.092 0.908 9 C -0.036 4.036 10 C -0.216 4.216 11 S 0.011 5.989 12 C -0.281 4.281 13 C 0.318 3.682 14 O -0.363 6.363 15 N -0.322 5.322 16 C 0.049 3.951 17 C -0.139 4.139 18 C -0.153 4.153 19 C 0.058 3.942 20 F -0.120 7.120 21 C -0.150 4.150 22 C -0.113 4.113 23 H 0.075 0.925 24 H 0.045 0.955 25 H 0.041 0.959 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.129 0.871 29 H 0.130 0.870 30 H 0.250 0.750 31 H 0.154 0.846 32 H 0.157 0.843 33 H 0.157 0.843 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 22.199 -15.601 0.445 27.137 hybrid contribution -0.659 -0.706 -0.098 0.970 sum 21.541 -16.307 0.347 27.020 Atomic orbital electron populations 1.69895 1.06275 1.27162 1.50410 1.24965 0.94758 0.99217 0.94192 0.86788 0.80515 0.83385 0.78816 1.20050 1.21185 1.18696 1.20939 0.88381 0.94740 1.52024 0.90817 1.19343 0.97132 0.89405 0.97710 1.23620 0.89006 1.04842 1.04101 1.87511 1.10588 1.02705 1.98079 1.23382 0.94911 1.02665 1.07183 1.20091 0.90009 0.82526 0.75544 1.90779 1.61908 1.38159 1.45478 1.43507 1.05427 1.09299 1.73930 1.17763 0.83383 0.96984 0.97001 1.20744 0.93932 0.99346 0.99911 1.20914 0.93820 1.00074 1.00498 1.17699 0.77439 0.97654 1.01369 1.91495 1.30249 1.95427 1.94848 1.21078 0.95002 0.97829 1.01140 1.21099 0.93047 0.99751 0.97442 0.92504 0.95460 0.95914 0.90659 0.90625 0.87113 0.86988 0.75005 0.84557 0.84341 0.84276 0.83568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.18 13.96 55.43 0.77 -26.41 16 2 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 3 Si 0.88 21.62 27.47 -169.99 -4.67 16.95 16 4 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 6 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 7 C -0.52 -14.46 9.66 -34.44 -0.33 -14.80 16 8 H 0.07 2.16 7.99 -52.48 -0.42 1.74 16 9 C 0.00 0.08 4.05 -27.89 -0.11 -0.04 16 10 C -0.07 -1.28 5.88 37.16 0.22 -1.07 16 11 S -0.22 -3.71 20.87 -107.50 -2.24 -5.95 16 12 C -0.13 -1.47 6.43 36.01 0.23 -1.24 16 13 C 0.53 6.28 7.59 -10.99 -0.08 6.20 16 14 O -0.49 -7.80 13.55 5.55 0.08 -7.72 16 15 N -0.67 -5.56 5.34 -9.85 -0.05 -5.62 16 16 C 0.14 1.32 6.28 -83.66 -0.53 0.80 16 17 C -0.12 -0.86 9.96 -39.40 -0.39 -1.25 16 18 C -0.13 -1.02 10.02 -39.54 -0.40 -1.42 16 19 C 0.08 0.73 7.30 -39.40 -0.29 0.44 16 20 F -0.14 -1.42 17.26 2.25 0.04 -1.38 16 21 C -0.13 -1.24 10.02 -39.54 -0.40 -1.64 16 22 C -0.09 -0.98 8.65 -39.40 -0.34 -1.32 16 23 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 24 H 0.03 0.66 7.20 -51.93 -0.37 0.29 16 25 H 0.02 0.54 7.57 -51.93 -0.39 0.15 16 26 H 0.07 1.36 8.14 -51.92 -0.42 0.94 16 27 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 28 H 0.11 1.00 8.14 -51.92 -0.42 0.58 16 29 H 0.11 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.41 1.87 8.82 -40.82 -0.36 1.51 16 31 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 32 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 33 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 34 H 0.15 1.73 6.41 -52.48 -0.34 1.39 16 LS Contribution 313.56 15.07 4.73 4.73 Total: -1.00 -33.14 313.56 -7.88 -41.02 By element: Atomic # 1 Polarization: 1.78 SS G_CDS: -4.01 Total: -2.23 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: -2.52 Total: -13.39 kcal Atomic # 7 Polarization: -32.74 SS G_CDS: 0.72 Total: -32.02 kcal Atomic # 8 Polarization: -7.80 SS G_CDS: 0.08 Total: -7.72 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.38 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.95 kcal Atomic # 16 Polarization: -3.71 SS G_CDS: -2.24 Total: -5.95 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -33.14 -7.88 -41.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058262886.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.271 kcal (2) G-P(sol) polarization free energy of solvation -33.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds