Wall clock time and date at job start Tue Mar 31 2020 05:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99875 * 2 1 4 4 H 1.48506 * 109.46943 * 240.00464 * 3 2 1 5 5 H 1.48500 * 109.47367 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47235 * 120.00388 * 3 2 1 7 7 C 1.37877 * 119.99971 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99674 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00132 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47206 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46992 * 180.02562 * 10 9 7 12 12 N 1.46494 * 109.46974 * 179.97438 * 11 10 9 13 13 C 1.34778 * 120.00115 * 180.02562 * 12 11 10 14 14 O 1.21589 * 120.00048 * 359.97438 * 13 12 11 15 15 C 1.47538 * 120.00184 * 179.97438 * 13 12 11 16 16 C 1.39717 * 120.18600 * 0.02562 * 15 13 12 17 17 C 1.37888 * 119.89622 * 179.97438 * 16 15 13 18 18 Cl 1.73593 * 119.86392 * 179.97438 * 17 16 15 19 19 C 1.38642 * 120.27168 * 0.02562 * 17 16 15 20 20 C 1.38054 * 120.38033 * 359.71632 * 19 17 16 21 21 C 1.38698 * 120.09510 * 0.56159 * 20 19 17 22 22 O 1.35675 * 120.13754 * 179.71870 * 21 20 19 23 23 H 0.97006 * 119.99783 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.46959 * 60.00112 * 9 7 2 25 25 H 1.09001 * 109.47032 * 300.00637 * 9 7 2 26 26 H 1.08996 * 109.46820 * 60.00124 * 10 9 7 27 27 H 1.09000 * 109.46781 * 300.00262 * 10 9 7 28 28 H 1.09002 * 109.47303 * 59.99554 * 11 10 9 29 29 H 1.09000 * 109.47334 * 299.99633 * 11 10 9 30 30 H 0.97005 * 120.00010 * 359.97438 * 12 11 10 31 31 H 1.07997 * 120.04883 * 359.96264 * 16 15 13 32 32 H 1.08004 * 119.81399 * 180.02562 * 19 17 16 33 33 H 1.07996 * 119.95523 * 180.27652 * 20 19 17 34 34 H 0.96696 * 114.00114 * 269.72368 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4803 -4.9870 -0.0012 12 7 2.4323 -6.1005 -0.0018 13 6 1.9831 -7.3712 -0.0030 14 8 0.7877 -7.5934 -0.0030 15 6 2.9418 -8.4926 -0.0041 16 6 4.3163 -8.2418 -0.0035 17 6 5.2070 -9.2944 -0.0041 18 17 6.9146 -8.9818 -0.0041 19 6 4.7445 -10.6014 -0.0059 20 6 3.3888 -10.8622 -0.0011 21 6 2.4791 -9.8152 -0.0063 22 8 1.1466 -10.0706 -0.0074 23 1 -0.4850 0.8401 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6247 -2.5570 0.8896 26 1 2.8719 -3.6043 0.8894 27 1 2.8720 -3.6042 -0.8905 28 1 0.8539 -5.0445 -0.8914 29 1 0.8534 -5.0451 0.8886 30 1 3.3860 -5.9233 -0.0021 31 1 4.6805 -7.2251 -0.0028 32 1 5.4487 -11.4202 -0.0059 33 1 3.0361 -11.8829 0.0020 34 1 0.7609 -10.1437 -0.8911 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070940507.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:14 Heat of formation + Delta-G solvation = -75.823060 kcal Electronic energy + Delta-G solvation = -18786.921393 eV Core-core repulsion = 15517.290562 eV Total energy + Delta-G solvation = -3269.630831 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.67194 -38.73008 -37.49699 -36.32744 -35.40048 -33.41694 -32.10882 -30.82873 -29.94313 -26.86176 -24.46950 -23.27496 -22.49050 -20.81835 -20.26227 -18.77697 -17.80336 -16.72922 -16.31940 -15.99924 -15.57469 -15.24582 -15.09553 -14.61621 -14.44736 -13.93724 -13.53811 -13.49155 -12.94683 -12.65042 -12.28461 -11.85861 -11.80407 -11.53213 -11.40217 -11.08572 -10.89585 -10.74495 -10.63932 -9.93227 -9.89053 -9.58633 -9.41219 -9.14828 -8.97454 -8.79157 -8.38076 -6.02846 -4.06182 0.33914 0.63921 1.69729 2.59510 3.21565 3.31517 3.36377 3.38341 3.39789 3.83060 4.27076 4.32902 4.43487 4.74141 4.83146 5.05748 5.25830 5.32873 5.43220 5.64719 5.65677 5.73960 5.84295 6.06103 6.12613 6.40048 6.56256 6.78139 6.96829 7.38965 7.59944 7.61633 7.74043 7.95504 8.26990 8.36864 9.00218 9.58084 11.08389 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.021398 B = 0.003130 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.237294 B = 8943.187047 C =10223.095477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.122 4.122 11 C 0.117 3.883 12 N -0.721 5.721 13 C 0.551 3.449 14 O -0.521 6.521 15 C -0.148 4.148 16 C -0.063 4.063 17 C -0.055 4.055 18 Cl -0.062 7.062 19 C -0.072 4.072 20 C -0.144 4.144 21 C 0.173 3.827 22 O -0.474 6.474 23 H 0.262 0.738 24 H 0.019 0.981 25 H 0.019 0.981 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.396 0.604 31 H 0.143 0.857 32 H 0.142 0.858 33 H 0.145 0.855 34 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.115 -23.250 -1.715 25.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.160 4.160 11 C -0.005 4.005 12 N -0.372 5.372 13 C 0.337 3.663 14 O -0.398 6.398 15 C -0.152 4.152 16 C -0.082 4.082 17 C -0.081 4.081 18 Cl -0.033 7.033 19 C -0.091 4.091 20 C -0.163 4.163 21 C 0.126 3.874 22 O -0.285 6.285 23 H 0.072 0.928 24 H 0.038 0.962 25 H 0.038 0.962 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.231 0.769 31 H 0.160 0.840 32 H 0.159 0.841 33 H 0.163 0.837 34 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 10.266 -23.210 -1.115 25.404 hybrid contribution 1.067 1.102 -0.459 1.601 sum 11.333 -22.109 -1.574 24.894 Atomic orbital electron populations 1.69958 1.06064 1.26829 1.50422 1.25028 0.94861 0.99303 0.95233 0.86638 0.79562 0.83067 0.78604 1.20228 1.21260 1.20230 1.21164 0.92967 0.90947 1.51143 0.92680 1.19022 0.93819 0.90785 0.97697 1.21906 0.99836 0.93291 1.00949 1.21697 0.91771 0.84831 1.02237 1.46169 1.10909 1.05753 1.74384 1.17911 0.87973 0.82658 0.77748 1.90822 1.15559 1.84512 1.48930 1.20523 0.93248 0.94424 1.07054 1.21188 0.91065 0.99340 0.96616 1.20766 0.85549 0.94546 1.07288 1.98394 1.11869 1.96035 1.96988 1.21099 0.95680 0.95216 0.97103 1.21415 0.92097 0.99837 1.02957 1.18558 0.84575 0.90034 0.94201 1.84756 1.17231 1.92881 1.33649 0.92846 0.96238 0.96233 0.92647 0.92667 0.91513 0.91484 0.76873 0.83980 0.84055 0.83700 0.74224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.76 13.29 55.43 0.74 -26.02 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.43 29.54 -169.99 -5.02 16.40 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.52 -14.56 9.11 -34.44 -0.31 -14.88 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 10 C -0.12 -2.35 5.27 -26.73 -0.14 -2.49 16 11 C 0.12 2.03 5.67 -4.05 -0.02 2.01 16 12 N -0.72 -10.33 5.51 -61.35 -0.34 -10.67 16 13 C 0.55 8.29 7.76 -12.47 -0.10 8.19 16 14 O -0.52 -9.60 15.16 -16.60 -0.25 -9.85 16 15 C -0.15 -1.75 5.89 -104.85 -0.62 -2.37 16 16 C -0.06 -0.61 9.31 -39.16 -0.36 -0.97 16 17 C -0.05 -0.48 6.31 -39.56 -0.25 -0.72 16 18 Cl -0.06 -0.51 28.94 -51.86 -1.50 -2.01 16 19 C -0.07 -0.53 9.81 -39.50 -0.39 -0.91 16 20 C -0.14 -1.13 9.98 -39.48 -0.39 -1.52 16 21 C 0.17 1.85 6.72 -38.70 -0.26 1.59 16 22 O -0.47 -5.35 11.57 -40.61 -0.47 -5.82 16 23 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 24 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.40 4.59 6.50 -40.82 -0.27 4.33 16 31 H 0.14 1.18 6.40 -52.49 -0.34 0.85 16 32 H 0.14 0.69 8.06 -52.48 -0.42 0.27 16 33 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 34 H 0.40 2.93 9.06 45.56 0.41 3.35 16 LS Contribution 314.57 15.07 4.74 4.74 Total: -1.00 -33.34 314.57 -8.30 -41.64 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -3.11 Total: 1.67 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: -3.08 Total: -10.07 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: 0.40 Total: -36.69 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -0.72 Total: -15.67 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.50 Total: -2.01 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.34 -8.30 -41.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070940507.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.186 kcal (2) G-P(sol) polarization free energy of solvation -33.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds