Wall clock time and date at job start Tue Mar 31 2020 05:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00133 * 2 1 4 4 H 1.48496 * 109.47238 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46959 * 300.00533 * 3 2 1 6 6 H 1.48497 * 109.47264 * 60.00076 * 3 2 1 7 7 C 1.38814 * 119.99852 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99602 * 183.55077 * 7 2 1 9 9 N 1.36930 * 120.00130 * 3.55653 * 7 2 1 10 10 C 1.46502 * 120.00227 * 165.56234 * 9 7 2 11 11 C 1.52997 * 109.46853 * 275.26306 * 10 9 7 12 12 C 1.50703 * 109.46781 * 180.02562 * 11 10 9 13 13 O 1.20821 * 120.00315 * 359.97438 * 12 11 10 14 14 O 1.34231 * 120.00111 * 179.97438 * 12 11 10 15 15 C 1.46506 * 120.00012 * 345.56150 * 9 7 2 16 16 C 1.50707 * 109.47147 * 279.20900 * 15 9 7 17 17 C 1.38229 * 120.00447 * 95.86475 * 16 15 9 18 18 C 1.38224 * 120.01009 * 179.74374 * 17 16 15 19 19 C 1.38258 * 120.02747 * 0.25949 * 18 17 16 20 20 C 1.38196 * 120.01274 * 0.02562 * 19 18 17 21 21 C 1.38329 * 120.00336 * 276.14331 * 16 15 9 22 22 Cl 1.73596 * 120.01931 * 0.02562 * 21 16 15 23 23 H 0.97010 * 119.99979 * 359.97438 * 1 2 3 24 24 H 1.08994 * 109.46927 * 35.26332 * 10 9 7 25 25 H 1.08998 * 109.47160 * 155.26013 * 10 9 7 26 26 H 1.09003 * 109.47079 * 299.99235 * 11 10 9 27 27 H 1.08998 * 109.47476 * 59.99901 * 11 10 9 28 28 H 0.96696 * 117.00155 * 179.97438 * 14 12 11 29 29 H 1.08998 * 109.47506 * 159.20737 * 15 9 7 30 30 H 1.08997 * 109.47151 * 39.20321 * 15 9 7 31 31 H 1.07994 * 119.99585 * 0.02562 * 17 16 15 32 32 H 1.08003 * 119.98939 * 180.23055 * 18 17 16 33 33 H 1.08004 * 119.99692 * 179.97438 * 19 18 17 34 34 H 1.08004 * 120.00534 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0886 -1.2031 0.0574 9 7 1.3275 -2.3869 -0.0746 10 6 2.0423 -3.6256 -0.3921 11 6 2.1694 -3.7662 -1.9103 12 6 2.9042 -5.0408 -2.2369 13 8 3.2872 -5.7624 -1.3468 14 8 3.1330 -5.3745 -3.5168 15 6 -0.1177 -2.4156 0.1636 16 6 -0.3823 -2.4186 1.6473 17 6 -0.6481 -1.2320 2.3045 18 6 -0.8960 -1.2353 3.6643 19 6 -0.8730 -2.4246 4.3689 20 6 -0.6017 -3.6109 3.7140 21 6 -0.3536 -3.6083 2.3526 22 17 -0.0121 -5.0980 1.5294 23 1 -0.4850 0.8401 0.0004 24 1 3.0361 -3.5963 0.0545 25 1 1.4897 -4.4764 0.0066 26 1 1.1756 -3.7956 -2.3570 27 1 2.7220 -2.9155 -2.3090 28 1 3.6084 -6.2012 -3.6767 29 1 -0.5418 -3.3150 -0.2829 30 1 -0.5776 -1.5354 -0.2855 31 1 -0.6665 -0.3027 1.7546 32 1 -1.1072 -0.3083 4.1768 33 1 -1.0664 -2.4266 5.4315 34 1 -0.5842 -4.5400 4.2644 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071737933.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:34 Heat of formation + Delta-G solvation = -41.022020 kcal Electronic energy + Delta-G solvation = -20327.797705 eV Core-core repulsion = 17059.675960 eV Total energy + Delta-G solvation = -3268.121744 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.85711 -38.56647 -36.17334 -35.70297 -35.63206 -32.38246 -30.99191 -29.86700 -29.21595 -25.68097 -24.70254 -22.10503 -21.67138 -20.59757 -19.68874 -17.79098 -17.20206 -16.14237 -15.93398 -15.63935 -15.08719 -14.56222 -14.39263 -13.75610 -13.47490 -13.14020 -12.83496 -12.70642 -12.42396 -12.14708 -11.67774 -11.38062 -11.24092 -11.09042 -11.04988 -10.78074 -10.63156 -10.42411 -10.24483 -10.16736 -9.96156 -9.68401 -9.41470 -8.80176 -7.97697 -7.79255 -7.04059 -5.61892 -3.37426 2.01348 2.20259 2.58517 2.91836 3.28815 3.37897 3.38443 3.45473 4.35250 4.54968 5.18284 5.49434 5.51992 5.63245 5.70030 5.75101 5.86902 6.05969 6.23173 6.31883 6.36573 6.58547 6.64142 6.73395 6.75980 6.94342 6.95326 7.06424 7.39587 7.51095 7.69931 7.84671 7.91573 8.22690 8.48390 9.19199 9.72156 10.11363 11.08196 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.012081 B = 0.008667 C = 0.005387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.107807 B = 3229.955611 C = 5196.759177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.015 4.015 3 Si 0.916 3.084 4 H -0.281 1.281 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.213 4.213 8 H 0.076 0.924 9 N -0.583 5.583 10 C 0.148 3.852 11 C -0.133 4.133 12 C 0.478 3.522 13 O -0.523 6.523 14 O -0.525 6.525 15 C 0.135 3.865 16 C -0.047 4.047 17 C -0.081 4.081 18 C -0.141 4.141 19 C -0.134 4.134 20 C -0.134 4.134 21 C -0.042 4.042 22 Cl -0.089 7.089 23 H 0.253 0.747 24 H 0.047 0.953 25 H 0.070 0.930 26 H 0.098 0.902 27 H 0.104 0.896 28 H 0.399 0.601 29 H 0.021 0.979 30 H 0.174 0.826 31 H 0.174 0.826 32 H 0.110 0.890 33 H 0.112 0.888 34 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.027 -5.273 0.134 5.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.206 4.206 3 Si 0.746 3.254 4 H -0.206 1.206 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.342 4.342 8 H 0.094 0.906 9 N -0.301 5.301 10 C 0.020 3.980 11 C -0.174 4.174 12 C 0.321 3.679 13 O -0.412 6.412 14 O -0.336 6.336 15 C 0.011 3.989 16 C -0.050 4.050 17 C -0.100 4.100 18 C -0.160 4.160 19 C -0.153 4.153 20 C -0.153 4.153 21 C -0.069 4.069 22 Cl -0.061 7.061 23 H 0.066 0.934 24 H 0.065 0.935 25 H 0.088 0.912 26 H 0.116 0.884 27 H 0.122 0.878 28 H 0.256 0.744 29 H 0.040 0.960 30 H 0.189 0.811 31 H 0.190 0.810 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -1.141 -5.063 0.362 5.203 hybrid contribution 0.972 -0.110 0.140 0.988 sum -0.170 -5.173 0.502 5.200 Atomic orbital electron populations 1.68984 1.04846 1.23713 1.58592 1.24813 0.95572 0.97932 1.02315 0.85950 0.78847 0.83197 0.77373 1.20604 1.21554 1.21665 1.19609 0.91411 0.83617 1.39525 0.90601 1.44132 1.04458 1.02913 1.78582 1.20957 0.97530 0.90379 0.89113 1.22383 1.00477 0.91076 1.03424 1.24243 0.76327 0.88064 0.79252 1.90674 1.49491 1.52902 1.48090 1.84637 1.72426 1.45547 1.31008 1.21877 0.84269 1.04468 0.88329 1.20919 0.93642 0.89811 1.00673 1.22494 0.93145 1.01444 0.92901 1.21352 1.01832 0.97081 0.95698 1.20847 1.02949 0.92547 0.98923 1.20755 1.03591 0.98295 0.92671 1.21077 1.06076 0.87189 0.92565 1.98287 1.93539 1.34891 1.79350 0.93367 0.93513 0.91190 0.88416 0.87783 0.74371 0.96043 0.81052 0.81007 0.87145 0.87014 0.86807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -21.91 6.11 55.49 0.34 -21.57 16 2 C -0.01 -0.36 5.28 -17.43 -0.09 -0.45 16 3 Si 0.92 20.05 29.56 -169.99 -5.02 15.03 16 4 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.21 -5.23 9.69 -15.06 -0.15 -5.38 16 8 H 0.08 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.58 -13.38 2.55 -174.61 -0.45 -13.82 16 10 C 0.15 3.05 4.88 -4.04 -0.02 3.03 16 11 C -0.13 -2.36 6.11 -27.88 -0.17 -2.53 16 12 C 0.48 7.92 8.33 36.01 0.30 8.22 16 13 O -0.52 -10.03 16.74 -18.75 -0.31 -10.34 16 14 O -0.52 -6.93 13.42 -39.26 -0.53 -7.46 16 15 C 0.14 3.04 4.89 -5.19 -0.03 3.02 16 16 C -0.05 -1.03 5.37 -104.59 -0.56 -1.59 16 17 C -0.08 -1.74 9.15 -39.59 -0.36 -2.10 16 18 C -0.14 -2.62 10.05 -39.58 -0.40 -3.02 16 19 C -0.13 -2.30 10.05 -39.59 -0.40 -2.70 16 20 C -0.13 -2.43 9.83 -39.55 -0.39 -2.82 16 21 C -0.04 -0.85 6.31 -39.50 -0.25 -1.10 16 22 Cl -0.09 -1.68 24.45 -51.86 -1.27 -2.95 16 23 H 0.25 5.94 8.29 -40.82 -0.34 5.60 16 24 H 0.05 1.01 8.04 -51.93 -0.42 0.60 16 25 H 0.07 1.44 4.66 -51.93 -0.24 1.20 16 26 H 0.10 1.68 8.14 -51.93 -0.42 1.25 16 27 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 28 H 0.40 3.39 9.10 45.56 0.41 3.80 16 29 H 0.02 0.46 7.03 -51.93 -0.36 0.10 16 30 H 0.17 4.22 4.53 -78.95 -0.36 3.86 16 31 H 0.17 3.91 4.96 -52.49 -0.26 3.65 16 32 H 0.11 1.78 8.06 -52.48 -0.42 1.36 16 33 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 34 H 0.11 1.81 8.06 -52.48 -0.42 1.38 16 LS Contribution 298.99 15.07 4.51 4.51 Total: -1.00 -26.90 298.99 -8.13 -35.03 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -2.89 Total: 9.00 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: -2.51 Total: -7.42 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: -0.11 Total: -35.39 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: -0.84 Total: -17.80 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Atomic # 17 Polarization: -1.68 SS G_CDS: -1.27 Total: -2.95 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -26.90 -8.13 -35.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071737933.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.988 kcal (2) G-P(sol) polarization free energy of solvation -26.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds