Wall clock time and date at job start Tue Mar 31 2020 06:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39639 * 120.09686 * 356.34221 * 3 2 1 5 5 C 1.38042 * 120.03435 * 179.97438 * 4 3 2 6 6 C 1.38177 * 120.23707 * 359.74371 * 5 4 3 7 7 C 1.39156 * 120.19729 * 0.51055 * 6 5 4 8 8 N 1.39324 * 120.02251 * 179.76556 * 7 6 5 9 9 C 1.36848 * 119.99901 * 179.72572 * 8 7 6 10 10 H 1.08001 * 120.00084 * 37.63705 * 9 8 7 11 11 C 1.38789 * 119.99590 * 217.90633 * 9 8 7 12 12 N 1.31597 * 120.00224 * 19.76051 * 11 9 8 13 13 Si 1.86801 * 119.99853 * 199.75935 * 11 9 8 14 14 H 1.48508 * 109.47080 * 90.00256 * 13 11 9 15 15 H 1.48498 * 109.47295 * 209.99785 * 13 11 9 16 16 H 1.48505 * 109.47092 * 330.00297 * 13 11 9 17 17 C 1.46503 * 119.99717 * 359.72521 * 8 7 6 18 18 C 1.50704 * 109.46990 * 273.45188 * 17 8 7 19 19 C 1.33390 * 125.19877 * 90.00097 * 18 17 8 20 20 C 1.38426 * 114.91767 * 179.97438 * 19 18 17 21 21 C 1.33389 * 114.92028 * 0.02562 * 20 19 18 22 22 S 1.75879 * 125.20316 * 269.69511 * 18 17 8 23 23 C 1.38850 * 119.95830 * 359.49170 * 7 6 5 24 24 H 4.52072 * 14.03663 * 0.02562 * 4 2 1 25 25 H 1.08002 * 119.98400 * 359.95968 * 4 3 2 26 26 H 1.07995 * 119.88241 * 179.97438 * 5 4 3 27 27 H 1.07997 * 119.90311 * 180.27945 * 6 5 4 28 28 H 0.97007 * 119.99816 * 180.02562 * 12 11 9 29 29 H 1.08998 * 109.46989 * 33.45349 * 17 8 7 30 30 H 1.08993 * 109.47045 * 153.45574 * 17 8 7 31 31 H 1.07996 * 122.54730 * 359.95987 * 19 18 17 32 32 H 1.08003 * 122.53988 * 180.02562 * 20 19 18 33 33 H 1.08006 * 125.20279 * 180.02562 * 21 20 19 34 34 H 1.08001 * 120.12128 * 180.22563 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3068 -1.2047 0.0771 5 6 4.6872 -1.2026 0.0764 6 6 5.3812 -0.0106 -0.0056 7 6 4.6928 1.1966 -0.0775 8 7 5.3962 2.3967 -0.1552 9 6 4.7187 3.5832 -0.2316 10 1 3.8080 3.7223 0.3321 11 6 5.1989 4.6058 -1.0378 12 7 6.0481 4.3365 -2.0063 13 14 4.6397 6.3645 -0.7480 14 1 5.5604 7.0249 0.2120 15 1 4.6511 7.1059 -2.0346 16 1 3.2631 6.3607 -0.1909 17 6 6.8612 2.3883 -0.1552 18 6 7.3635 2.3914 1.2656 19 6 7.6136 1.3030 1.9951 20 6 8.0695 1.5529 3.2780 21 6 8.1892 2.8441 3.5905 22 16 7.7170 3.8305 2.2130 23 6 3.3043 1.2040 -0.0775 24 1 -1.0501 -0.0011 -0.0004 25 1 2.7685 -2.1391 0.1375 26 1 5.2267 -2.1362 0.1366 27 1 6.4612 -0.0156 -0.0102 28 1 6.3840 5.0514 -2.5695 29 1 7.2194 1.4941 -0.6653 30 1 7.2296 3.2740 -0.6727 31 1 7.4710 0.3027 1.6139 32 1 8.3101 0.7622 3.9733 33 1 8.5292 3.2255 4.5420 34 1 2.7673 2.1392 -0.1368 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000077377526.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:56 Heat of formation + Delta-G solvation = 127.347676 kcal Electronic energy + Delta-G solvation = -18970.935125 eV Core-core repulsion = 16155.300159 eV Total energy + Delta-G solvation = -2815.634966 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.073 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.87810 -37.29167 -35.79535 -33.11530 -31.97298 -30.64652 -29.24666 -28.18121 -25.96149 -24.09985 -22.87266 -21.86111 -20.78704 -18.72842 -18.12905 -17.37588 -16.50905 -15.98514 -14.99578 -14.95998 -14.73054 -14.23942 -13.78517 -13.38956 -12.95110 -12.75337 -12.41002 -12.24677 -12.19608 -11.95012 -11.61292 -11.22372 -11.02180 -10.81841 -10.69318 -10.62990 -10.42720 -10.22309 -10.08491 -9.81922 -9.32216 -8.54942 -8.16666 -7.94038 -7.80056 -6.73817 -6.31670 -4.00768 1.51837 1.80532 2.20761 2.50989 2.61706 3.10786 3.17522 3.18777 3.22742 3.26362 3.71927 4.03284 4.70391 4.75786 4.96964 5.03171 5.41995 5.59334 5.72609 5.92703 5.94015 6.02028 6.10427 6.20710 6.34605 6.47316 6.60174 6.68768 6.78456 6.86052 6.93645 7.12398 7.25268 7.31615 7.41028 7.43151 7.74185 8.01882 8.07318 8.56552 9.16389 9.55986 10.54271 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.011950 B = 0.007696 C = 0.005361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.458357 B = 3637.551873 C = 5221.316964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.112 4.112 3 C 0.038 3.962 4 C -0.204 4.204 5 C -0.070 4.070 6 C -0.222 4.222 7 C 0.223 3.777 8 N -0.438 5.438 9 C -0.310 4.310 10 H 0.088 0.912 11 C 0.038 3.962 12 N -0.863 5.863 13 Si 0.911 3.089 14 H -0.273 1.273 15 H -0.282 1.282 16 H -0.267 1.267 17 C 0.176 3.824 18 C -0.153 4.153 19 C -0.157 4.157 20 C -0.130 4.130 21 C -0.242 4.242 22 S 0.105 5.895 23 C -0.170 4.170 24 H 0.217 0.783 25 H 0.103 0.897 26 H 0.108 0.892 27 H 0.112 0.888 28 H 0.271 0.729 29 H 0.071 0.929 30 H 0.119 0.881 31 H 0.136 0.864 32 H 0.129 0.871 33 H 0.153 0.847 34 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.832 -4.109 5.747 7.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.112 4.112 3 C 0.037 3.963 4 C -0.226 4.226 5 C -0.089 4.089 6 C -0.246 4.246 7 C 0.110 3.890 8 N -0.126 5.126 9 C -0.438 4.438 10 H 0.105 0.895 11 C -0.168 4.168 12 N -0.498 5.498 13 Si 0.737 3.263 14 H -0.199 1.199 15 H -0.208 1.208 16 H -0.192 1.192 17 C 0.051 3.949 18 C -0.272 4.272 19 C -0.188 4.188 20 C -0.161 4.161 21 C -0.378 4.378 22 S 0.368 5.632 23 C -0.193 4.193 24 H 0.234 0.766 25 H 0.122 0.878 26 H 0.126 0.874 27 H 0.130 0.870 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.136 0.864 31 H 0.154 0.846 32 H 0.147 0.853 33 H 0.171 0.829 34 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.029 -2.142 5.276 6.045 hybrid contribution -0.356 -0.643 0.488 0.882 sum 1.673 -2.785 5.764 6.617 Atomic orbital electron populations 1.24634 0.95597 1.01861 1.02233 1.20481 0.92406 0.99015 0.99341 1.15687 0.85392 0.93858 1.01408 1.20425 0.93844 0.95596 1.12706 1.20475 0.93500 0.96630 0.98324 1.20609 0.98882 0.91473 1.13597 1.17990 0.90963 0.86534 0.93508 1.42252 1.02102 1.02152 1.66096 1.19340 1.09983 0.89533 1.24954 0.89474 1.25367 0.97453 1.00488 0.93454 1.69964 1.31533 1.33305 1.15049 0.86155 0.79703 0.82409 0.78054 1.19877 1.20773 1.19176 1.20049 0.82404 1.04844 0.87641 1.25499 1.04350 0.94694 1.02703 1.20165 1.04945 0.99418 0.94256 1.20068 1.03012 0.96037 0.97001 1.25530 1.11631 0.97411 1.03259 1.84384 1.63213 1.10714 1.04873 1.20567 0.92526 0.96697 1.09507 0.76567 0.87846 0.87393 0.87041 0.91929 0.91099 0.86383 0.84633 0.85294 0.82903 0.85895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -3.55 19.25 29.55 0.57 -2.98 16 2 C -0.11 -2.12 13.24 -38.84 -0.51 -2.64 16 3 C 0.04 0.77 5.72 -107.03 -0.61 0.16 16 4 C -0.20 -3.81 9.75 -39.13 -0.38 -4.19 16 5 C -0.07 -1.26 10.02 -39.68 -0.40 -1.66 16 6 C -0.22 -4.39 8.57 -39.26 -0.34 -4.72 16 7 C 0.22 5.04 6.50 -83.89 -0.55 4.49 16 8 N -0.44 -10.33 2.62 -114.45 -0.30 -10.63 16 9 C -0.31 -7.75 8.47 -15.11 -0.13 -7.88 16 10 H 0.09 2.21 6.84 -52.49 -0.36 1.85 16 11 C 0.04 0.93 4.96 -17.45 -0.09 0.85 16 12 N -0.86 -22.01 11.44 55.49 0.63 -21.38 16 13 Si 0.91 19.58 29.60 -169.99 -5.03 14.55 16 14 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 15 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 16 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 17 C 0.18 3.81 5.17 -5.19 -0.03 3.78 16 18 C -0.15 -2.97 6.08 -36.00 -0.22 -3.19 16 19 C -0.16 -2.74 9.50 -41.21 -0.39 -3.13 16 20 C -0.13 -2.02 10.18 -41.21 -0.42 -2.44 16 21 C -0.24 -3.74 11.23 29.04 0.33 -3.41 16 22 S 0.10 1.90 23.33 -107.50 -2.51 -0.61 16 23 C -0.17 -3.81 8.96 -38.94 -0.35 -4.16 16 24 H 0.22 2.36 7.80 -54.09 -0.42 1.94 16 25 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 26 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 27 H 0.11 2.05 4.55 -52.49 -0.24 1.81 16 28 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 29 H 0.07 1.45 6.37 -51.93 -0.33 1.12 16 30 H 0.12 2.79 5.52 -51.93 -0.29 2.50 16 31 H 0.14 2.20 6.33 -52.49 -0.33 1.87 16 32 H 0.13 1.65 8.06 -52.48 -0.42 1.23 16 33 H 0.15 1.92 8.06 -52.48 -0.42 1.49 16 34 H 0.12 2.87 6.45 -52.49 -0.34 2.53 16 LS Contribution 310.28 15.07 4.68 4.68 Total: -1.00 -26.70 310.28 -9.17 -35.87 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -3.13 Total: 8.63 kcal Atomic # 6 Polarization: -27.61 SS G_CDS: -3.51 Total: -31.12 kcal Atomic # 7 Polarization: -32.34 SS G_CDS: 0.34 Total: -32.01 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.03 Total: 14.55 kcal Atomic # 16 Polarization: 1.90 SS G_CDS: -2.51 Total: -0.61 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -26.70 -9.17 -35.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077377526.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.219 kcal (2) G-P(sol) polarization free energy of solvation -26.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds