Wall clock time and date at job start Tue Mar 31 2020 05:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00079 * 2 1 4 4 H 1.48495 * 109.47287 * 240.00015 * 3 2 1 5 5 H 1.48491 * 109.47184 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46804 * 120.00299 * 3 2 1 7 7 C 1.37877 * 119.99804 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99833 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00266 * 359.97438 * 7 2 1 10 10 N 1.46492 * 109.47376 * 180.02562 * 9 7 2 11 11 C 1.46503 * 120.00330 * 89.99907 * 10 9 7 12 12 C 1.53001 * 109.47084 * 95.42374 * 11 10 9 13 13 C 1.53000 * 117.50242 * 243.75021 * 12 11 10 14 14 C 1.52999 * 117.49894 * 175.08661 * 12 11 10 15 15 C 1.34780 * 119.99843 * 269.99856 * 10 9 7 16 16 O 1.21706 * 120.00118 * 5.23164 * 15 10 9 17 17 C 1.46524 * 119.99721 * 185.22777 * 15 10 9 18 18 C 1.36614 * 125.97659 * 185.70354 * 17 15 10 19 19 C 1.40252 * 106.74112 * 179.97438 * 18 17 15 20 20 C 1.35371 * 107.11144 * 359.97438 * 19 18 17 21 21 Cl 1.73605 * 125.62844 * 179.97438 * 20 19 18 22 22 O 1.33946 * 108.74074 * 359.77141 * 20 19 18 23 23 H 0.97006 * 119.99572 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.46989 * 59.99711 * 9 7 2 25 25 H 1.09003 * 109.46921 * 300.00337 * 9 7 2 26 26 H 1.09002 * 109.46671 * 335.43213 * 11 10 9 27 27 H 1.08993 * 109.47459 * 215.42668 * 11 10 9 28 28 H 1.09008 * 115.55051 * 29.42425 * 12 11 10 29 29 H 1.08998 * 117.49660 * 359.97438 * 13 12 11 30 30 H 1.08995 * 117.50003 * 145.02532 * 13 12 11 31 31 H 1.09000 * 117.50111 * 214.98209 * 14 12 11 32 32 H 1.09000 * 117.49811 * 0.02562 * 14 12 11 33 33 H 1.08005 * 126.63057 * 359.96929 * 18 17 15 34 34 H 1.07997 * 126.44319 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6126 -0.0005 11 6 2.6790 -4.1695 1.2682 12 6 1.8299 -5.3862 1.6417 13 6 0.9931 -5.2985 2.9196 14 6 2.2426 -6.1820 2.8815 15 6 2.6408 -4.1249 -1.1678 16 8 2.3209 -3.6028 -2.2196 17 6 3.5021 -5.3102 -1.1704 18 6 4.1020 -5.8640 -2.2657 19 6 4.8273 -6.9749 -1.8108 20 6 4.6417 -7.0506 -0.4720 21 17 5.3256 -8.2527 0.5773 22 8 3.8469 -6.0424 -0.0900 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8902 25 1 0.6247 -2.5570 0.8897 26 1 2.5959 -3.4146 2.0501 27 1 3.7210 -4.4717 1.1641 28 1 1.4111 -5.9426 0.8030 29 1 1.0479 -4.3740 3.4945 30 1 0.0241 -5.7973 2.9219 31 1 2.0950 -7.2617 2.8588 32 1 3.1188 -5.8384 3.4314 33 1 4.0313 -5.5140 -3.2851 34 1 5.4226 -7.6435 -2.4148 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103438071.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:33 Heat of formation + Delta-G solvation = 10.689719 kcal Electronic energy + Delta-G solvation = -20220.529442 eV Core-core repulsion = 16954.650087 eV Total energy + Delta-G solvation = -3265.879355 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.69829 -38.99162 -37.19934 -37.12769 -34.62279 -33.14057 -32.56862 -29.82928 -27.80334 -26.18906 -23.78276 -22.18129 -21.92907 -21.66443 -20.69313 -19.40860 -17.64847 -16.72001 -16.51097 -16.31104 -15.58302 -14.96359 -14.45974 -14.28867 -13.59193 -13.49301 -13.47643 -13.14591 -12.71047 -12.36852 -12.19852 -12.13922 -11.50277 -11.45727 -11.32495 -11.22867 -10.94697 -10.64916 -10.32172 -10.15493 -10.08865 -9.70053 -9.65937 -9.41858 -8.54379 -8.45781 -7.80535 -6.07330 -4.12414 1.04481 1.10711 2.25437 3.23138 3.31444 3.35774 3.39053 3.65122 3.78535 4.08381 4.42874 4.77921 4.78985 5.04604 5.14093 5.27241 5.28584 5.42811 5.57185 5.66275 5.73875 5.79189 5.90812 6.06104 6.09293 6.22269 6.30359 6.50064 6.66106 7.02328 7.31945 7.42004 7.87796 8.16420 8.20811 8.70522 8.92905 9.52484 11.00768 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.020298 B = 0.005204 C = 0.004558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.127677 B = 5379.387166 C = 6142.098456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.063 3.937 3 Si 0.899 3.101 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.529 4.529 8 H 0.058 0.942 9 C 0.248 3.752 10 N -0.578 5.578 11 C 0.141 3.859 12 C -0.157 4.157 13 C -0.177 4.177 14 C -0.175 4.175 15 C 0.584 3.416 16 O -0.511 6.511 17 C -0.035 4.035 18 C -0.135 4.135 19 C -0.184 4.184 20 C 0.030 3.970 21 Cl 0.021 6.979 22 O -0.139 6.139 23 H 0.264 0.736 24 H 0.045 0.955 25 H 0.039 0.961 26 H 0.090 0.910 27 H 0.076 0.924 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.167 0.833 34 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.317 -16.163 3.239 18.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.139 4.139 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.568 4.568 8 H 0.076 0.924 9 C 0.129 3.871 10 N -0.307 5.307 11 C 0.017 3.983 12 C -0.176 4.176 13 C -0.214 4.214 14 C -0.213 4.213 15 C 0.369 3.631 16 O -0.389 6.389 17 C -0.088 4.088 18 C -0.155 4.155 19 C -0.204 4.204 20 C -0.049 4.049 21 Cl 0.050 6.950 22 O -0.036 6.036 23 H 0.074 0.926 24 H 0.063 0.937 25 H 0.057 0.943 26 H 0.108 0.892 27 H 0.094 0.906 28 H 0.117 0.883 29 H 0.115 0.885 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.111 0.889 33 H 0.184 0.816 34 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 7.902 -15.745 3.104 17.888 hybrid contribution 0.624 0.595 0.113 0.870 sum 8.527 -15.149 3.217 17.679 Atomic orbital electron populations 1.69923 1.05982 1.27223 1.50099 1.24914 0.94878 0.99195 0.94915 0.86545 0.79523 0.82607 0.78688 1.20106 1.21141 1.20234 1.21365 0.93381 0.90488 1.51580 0.92373 1.19410 0.87048 0.81740 0.98878 1.48210 1.44439 1.34286 1.03759 1.21187 0.96450 0.93576 0.87112 1.22732 1.02931 0.99749 0.92194 1.23047 0.95208 1.01952 1.01234 1.22865 0.99031 0.97650 1.01737 1.16606 0.80227 0.80970 0.85261 1.90885 1.57490 1.59489 1.31061 1.22877 1.04451 0.97000 0.84438 1.21878 0.97921 0.95521 1.00225 1.21452 1.05541 1.01475 0.91921 1.22844 0.99947 0.91382 0.90694 1.98422 1.80639 1.48446 1.67525 1.84373 1.51556 1.32386 1.35280 0.92586 0.93679 0.94289 0.89215 0.90622 0.88278 0.88476 0.89199 0.89288 0.88932 0.81588 0.82084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 2 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 7 C -0.53 -14.81 9.39 -34.44 -0.32 -15.13 16 8 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 9 C 0.25 6.37 5.10 -5.20 -0.03 6.34 16 10 N -0.58 -12.38 2.47 -176.67 -0.44 -12.82 16 11 C 0.14 2.43 5.25 -4.04 -0.02 2.41 16 12 C -0.16 -2.35 4.46 -90.62 -0.40 -2.75 16 13 C -0.18 -2.38 10.18 -26.69 -0.27 -2.65 16 14 C -0.18 -2.12 10.25 -26.69 -0.27 -2.40 16 15 C 0.58 12.50 7.59 -12.92 -0.10 12.40 16 16 O -0.51 -12.76 16.50 5.18 0.09 -12.67 16 17 C -0.03 -0.59 6.65 -36.83 -0.25 -0.84 16 18 C -0.13 -1.96 10.62 -39.41 -0.42 -2.38 16 19 C -0.18 -2.19 10.84 -39.85 -0.43 -2.62 16 20 C 0.03 0.38 7.93 29.71 0.24 0.61 16 21 Cl 0.02 0.21 29.30 -51.86 -1.52 -1.31 16 22 O -0.14 -2.09 6.28 4.74 0.03 -2.06 16 23 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 24 H 0.05 1.29 7.50 -51.93 -0.39 0.90 16 25 H 0.04 1.01 8.07 -51.93 -0.42 0.59 16 26 H 0.09 1.58 7.76 -51.93 -0.40 1.17 16 27 H 0.08 1.23 5.95 -51.93 -0.31 0.93 16 28 H 0.10 1.59 8.04 -51.92 -0.42 1.18 16 29 H 0.10 1.32 8.03 -51.93 -0.42 0.90 16 30 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.17 2.24 8.06 -52.48 -0.42 1.82 16 34 H 0.16 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 314.45 15.07 4.74 4.74 Total: -1.00 -30.58 314.45 -7.78 -38.35 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: -4.01 Total: -0.16 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: -2.38 Total: -5.31 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 0.30 Total: -38.22 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: 0.12 Total: -14.73 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 17 Polarization: 0.21 SS G_CDS: -1.52 Total: -1.31 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.58 -7.78 -38.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103438071.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.042 kcal (2) G-P(sol) polarization free energy of solvation -30.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds