Wall clock time and date at job start Tue Mar 31 2020 05:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86800 * 120.00518 * 2 1 4 4 H 1.48503 * 109.46673 * 274.98487 * 3 2 1 5 5 H 1.48495 * 109.47267 * 34.98139 * 3 2 1 6 6 H 1.48497 * 109.47063 * 154.98787 * 3 2 1 7 7 C 1.40052 * 119.99514 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99900 * 186.14581 * 7 2 1 9 9 C 1.46378 * 120.00253 * 6.15423 * 7 2 1 10 10 O 1.21687 * 119.99469 * 353.93442 * 9 7 2 11 11 N 1.34774 * 120.00214 * 173.93767 * 9 7 2 12 12 C 1.46498 * 120.00070 * 179.97438 * 11 9 7 13 13 C 1.52996 * 109.47343 * 179.97438 * 12 11 9 14 14 C 1.52996 * 109.47368 * 180.02562 * 13 12 11 15 15 S 1.81397 * 109.47235 * 179.97438 * 14 13 12 16 16 C 1.76205 * 103.00145 * 180.02562 * 15 14 13 17 17 C 1.38939 * 120.05150 * 0.27570 * 16 15 14 18 18 C 1.38097 * 119.94198 * 180.20819 * 17 16 15 19 19 C 1.38483 * 120.05704 * 359.51785 * 18 17 16 20 20 F 1.35101 * 119.94631 * 180.27536 * 19 18 17 21 21 C 1.38483 * 120.10585 * 0.25341 * 19 18 17 22 22 C 1.38098 * 120.05600 * 359.97438 * 21 19 18 23 23 H 0.97003 * 119.99696 * 359.97438 * 1 2 3 24 24 H 0.97000 * 119.99826 * 359.97438 * 11 9 7 25 25 H 1.09008 * 109.46656 * 59.99926 * 12 11 9 26 26 H 1.08999 * 109.47118 * 300.00250 * 12 11 9 27 27 H 1.09001 * 109.47038 * 59.99712 * 13 12 11 28 28 H 1.09001 * 109.46851 * 300.00560 * 13 12 11 29 29 H 1.09004 * 109.47126 * 60.00526 * 14 13 12 30 30 H 1.08999 * 109.47007 * 300.00241 * 14 13 12 31 31 H 1.08002 * 120.03200 * 359.97438 * 17 16 15 32 32 H 1.08004 * 119.97602 * 179.79316 * 18 17 16 33 33 H 1.08001 * 119.97016 * 180.02562 * 21 19 18 34 34 H 1.07999 * 120.02944 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 2.3830 2.1071 -1.3948 5 1 1.4950 2.6200 0.8026 6 1 3.5871 1.4118 0.5920 7 6 2.0069 -1.2129 0.0005 8 1 3.0822 -1.2157 0.1007 9 6 1.2812 -2.4770 -0.1348 10 8 0.0644 -2.4827 -0.1367 11 7 1.9608 -3.6344 -0.2572 12 6 1.2346 -4.8995 -0.3921 13 6 2.2345 -6.0511 -0.5142 14 6 1.4760 -7.3723 -0.6557 15 16 2.6615 -8.7375 -0.8013 16 6 1.6211 -10.1514 -0.9536 17 6 0.2397 -10.0030 -0.9444 18 6 -0.5736 -11.1132 -1.0596 19 6 -0.0133 -12.3724 -1.1942 20 9 -0.8111 -13.4564 -1.3123 21 6 1.3633 -12.5224 -1.2084 22 6 2.1808 -11.4158 -1.0888 23 1 -0.4850 0.8401 0.0004 24 1 2.9308 -3.6297 -0.2559 25 1 0.6089 -4.8659 -1.2840 26 1 0.6075 -5.0539 0.4860 27 1 2.8605 -6.0848 0.3774 28 1 2.8612 -5.8964 -1.3925 29 1 0.8503 -7.3383 -1.5477 30 1 0.8490 -7.5271 0.2223 31 1 -0.1977 -9.0207 -0.8435 32 1 -1.6475 -10.9988 -1.0491 33 1 1.7979 -13.5055 -1.3139 34 1 3.2544 -11.5332 -1.1004 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153535894.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:26 Heat of formation + Delta-G solvation = -73.847363 kcal Electronic energy + Delta-G solvation = -18045.791369 eV Core-core repulsion = 14790.662706 eV Total energy + Delta-G solvation = -3255.128662 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.078 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.18068 -39.11883 -37.48081 -34.90394 -32.57035 -31.83713 -31.28414 -30.84860 -27.06408 -25.20060 -23.33429 -23.10534 -21.48519 -19.73871 -18.24438 -17.53952 -17.16691 -16.61551 -15.90017 -15.59229 -15.43877 -15.33810 -14.77009 -14.26127 -14.03970 -13.90802 -13.63186 -13.52541 -12.90728 -12.76409 -12.38904 -12.04063 -11.86725 -11.49737 -11.21081 -11.09763 -11.04715 -10.65752 -10.47422 -10.39350 -10.22609 -9.84994 -9.54372 -8.87143 -7.65729 -7.62760 -7.55565 -6.22165 -4.66292 0.65352 0.82374 1.22624 2.16336 3.12620 3.12886 3.19866 3.23433 3.92140 4.08250 4.31799 4.47054 4.52638 4.57140 4.75004 4.80124 4.94887 5.18214 5.27223 5.33025 5.46966 5.52675 5.58146 5.73886 5.77630 5.79299 5.80966 5.89592 6.43277 6.44800 6.46077 7.41613 7.89197 8.04618 8.30177 9.00208 9.49110 10.56806 10.74979 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.049796 B = 0.002356 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.154772 B =11882.807045 C =12414.194818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.087 3.913 3 Si 0.908 3.092 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.068 0.932 9 C 0.554 3.446 10 O -0.582 6.582 11 N -0.768 5.768 12 C 0.139 3.861 13 C -0.114 4.114 14 C -0.103 4.103 15 S -0.107 6.107 16 C -0.092 4.092 17 C -0.106 4.106 18 C -0.131 4.131 19 C 0.087 3.913 20 F -0.140 7.140 21 C -0.135 4.135 22 C -0.075 4.075 23 H 0.268 0.732 24 H 0.381 0.619 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.137 0.863 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.370 -21.918 -2.340 22.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.133 4.133 3 Si 0.733 3.267 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.583 4.583 8 H 0.087 0.913 9 C 0.358 3.642 10 O -0.465 6.465 11 N -0.424 5.424 12 C 0.012 3.988 13 C -0.153 4.153 14 C -0.252 4.252 15 S 0.139 5.861 16 C -0.205 4.205 17 C -0.130 4.130 18 C -0.152 4.152 19 C 0.065 3.935 20 F -0.119 7.119 21 C -0.155 4.155 22 C -0.099 4.099 23 H 0.079 0.921 24 H 0.212 0.788 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.155 0.845 32 H 0.157 0.843 33 H 0.157 0.843 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 4.493 -21.665 -2.317 22.247 hybrid contribution -0.681 0.402 -0.061 0.793 sum 3.812 -21.263 -2.379 21.732 Atomic orbital electron populations 1.70028 1.07110 1.27300 1.35244 1.25718 0.94611 1.00354 0.92589 0.86349 0.80229 0.81430 0.78690 1.19788 1.20447 1.18865 1.20888 0.94128 0.89551 1.53749 0.91337 1.18238 0.87150 0.82386 0.76418 1.90597 1.14121 1.86439 1.55331 1.46128 1.08646 1.05623 1.82052 1.20787 0.93639 0.83621 1.00737 1.21535 0.98825 0.91374 1.03566 1.23700 1.00075 0.95333 1.06062 1.85584 1.13133 0.96873 1.90543 1.21906 0.96488 0.97837 1.04290 1.21150 0.91813 0.99390 1.00613 1.21085 1.01153 0.90869 1.02078 1.17694 0.88486 0.83313 1.04038 1.91503 1.73588 1.53301 1.93519 1.21069 0.91570 1.00156 1.02755 1.20630 1.00187 0.89768 0.99295 0.92092 0.78750 0.93186 0.93185 0.90517 0.90513 0.88900 0.88893 0.84493 0.84310 0.84275 0.84421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.99 11.85 55.55 0.66 -22.33 16 2 C 0.09 2.42 5.49 -17.37 -0.10 2.32 16 3 Si 0.91 19.98 29.56 -169.99 -5.03 14.96 16 4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 6 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.55 -15.32 9.54 -35.63 -0.34 -15.66 16 8 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 9 C 0.55 15.65 7.74 -12.99 -0.10 15.55 16 10 O -0.58 -18.78 15.05 5.20 0.08 -18.70 16 11 N -0.77 -16.70 5.55 -61.72 -0.34 -17.04 16 12 C 0.14 2.49 5.67 -4.04 -0.02 2.46 16 13 C -0.11 -1.44 5.34 -26.74 -0.14 -1.59 16 14 C -0.10 -1.10 4.33 37.16 0.16 -0.94 16 15 S -0.11 -1.13 21.92 -107.50 -2.36 -3.48 16 16 C -0.09 -0.92 6.11 -39.06 -0.24 -1.16 16 17 C -0.11 -1.01 9.36 -39.37 -0.37 -1.38 16 18 C -0.13 -1.20 10.02 -39.54 -0.40 -1.60 16 19 C 0.09 0.82 7.30 -39.40 -0.29 0.54 16 20 F -0.14 -1.42 17.26 2.25 0.04 -1.38 16 21 C -0.13 -1.13 10.02 -39.54 -0.40 -1.52 16 22 C -0.07 -0.66 9.79 -39.37 -0.39 -1.04 16 23 H 0.27 7.26 8.29 -40.82 -0.34 6.92 16 24 H 0.38 7.19 8.45 -40.82 -0.35 6.84 16 25 H 0.05 0.95 8.14 -51.92 -0.42 0.52 16 26 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.09 0.94 7.73 -51.92 -0.40 0.54 16 30 H 0.09 0.94 7.76 -51.92 -0.40 0.54 16 31 H 0.14 1.18 5.88 -52.49 -0.31 0.87 16 32 H 0.14 1.03 8.06 -52.48 -0.42 0.61 16 33 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 34 H 0.14 0.98 8.06 -52.49 -0.42 0.55 16 LS Contribution 315.94 15.07 4.76 4.76 Total: -1.00 -34.02 315.94 -8.76 -42.79 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -3.96 Total: 4.44 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: -2.61 Total: -4.02 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: 0.32 Total: -39.37 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: 0.08 Total: -18.70 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.38 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.03 Total: 14.96 kcal Atomic # 16 Polarization: -1.13 SS G_CDS: -2.36 Total: -3.48 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -34.02 -8.76 -42.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153535894.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.060 kcal (2) G-P(sol) polarization free energy of solvation -34.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds