Wall clock time and date at job start Tue Mar 31 2020 05:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86800 * 120.00518 * 2 1 4 4 H 1.48503 * 109.46673 * 274.98487 * 3 2 1 5 5 H 1.48495 * 109.47267 * 34.98139 * 3 2 1 6 6 H 1.48497 * 109.47063 * 154.98787 * 3 2 1 7 7 C 1.40052 * 119.99514 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99900 * 186.14581 * 7 2 1 9 9 C 1.46378 * 120.00253 * 6.15423 * 7 2 1 10 10 O 1.21687 * 119.99469 * 353.93442 * 9 7 2 11 11 N 1.34774 * 120.00214 * 173.93767 * 9 7 2 12 12 C 1.46498 * 120.00070 * 179.97438 * 11 9 7 13 13 C 1.52996 * 109.47343 * 179.97438 * 12 11 9 14 14 C 1.52996 * 109.47368 * 180.02562 * 13 12 11 15 15 S 1.81397 * 109.47235 * 179.97438 * 14 13 12 16 16 C 1.76205 * 103.00145 * 180.02562 * 15 14 13 17 17 C 1.38939 * 120.05150 * 0.27570 * 16 15 14 18 18 C 1.38097 * 119.94198 * 180.20819 * 17 16 15 19 19 C 1.38483 * 120.05704 * 359.51785 * 18 17 16 20 20 F 1.35101 * 119.94631 * 180.27536 * 19 18 17 21 21 C 1.38483 * 120.10585 * 0.25341 * 19 18 17 22 22 C 1.38098 * 120.05600 * 359.97438 * 21 19 18 23 23 H 0.97003 * 119.99696 * 359.97438 * 1 2 3 24 24 H 0.97000 * 119.99826 * 359.97438 * 11 9 7 25 25 H 1.09008 * 109.46656 * 59.99926 * 12 11 9 26 26 H 1.08999 * 109.47118 * 300.00250 * 12 11 9 27 27 H 1.09001 * 109.47038 * 59.99712 * 13 12 11 28 28 H 1.09001 * 109.46851 * 300.00560 * 13 12 11 29 29 H 1.09004 * 109.47126 * 60.00526 * 14 13 12 30 30 H 1.08999 * 109.47007 * 300.00241 * 14 13 12 31 31 H 1.08002 * 120.03200 * 359.97438 * 17 16 15 32 32 H 1.08004 * 119.97602 * 179.79316 * 18 17 16 33 33 H 1.08001 * 119.97016 * 180.02562 * 21 19 18 34 34 H 1.07999 * 120.02944 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 2.3830 2.1071 -1.3948 5 1 1.4950 2.6200 0.8026 6 1 3.5871 1.4118 0.5920 7 6 2.0069 -1.2129 0.0005 8 1 3.0822 -1.2157 0.1007 9 6 1.2812 -2.4770 -0.1348 10 8 0.0644 -2.4827 -0.1367 11 7 1.9608 -3.6344 -0.2572 12 6 1.2346 -4.8995 -0.3921 13 6 2.2345 -6.0511 -0.5142 14 6 1.4760 -7.3723 -0.6557 15 16 2.6615 -8.7375 -0.8013 16 6 1.6211 -10.1514 -0.9536 17 6 0.2397 -10.0030 -0.9444 18 6 -0.5736 -11.1132 -1.0596 19 6 -0.0133 -12.3724 -1.1942 20 9 -0.8111 -13.4564 -1.3123 21 6 1.3633 -12.5224 -1.2084 22 6 2.1808 -11.4158 -1.0888 23 1 -0.4850 0.8401 0.0004 24 1 2.9308 -3.6297 -0.2559 25 1 0.6089 -4.8659 -1.2840 26 1 0.6075 -5.0539 0.4860 27 1 2.8605 -6.0848 0.3774 28 1 2.8612 -5.8964 -1.3925 29 1 0.8503 -7.3383 -1.5477 30 1 0.8490 -7.5271 0.2223 31 1 -0.1977 -9.0207 -0.8435 32 1 -1.6475 -10.9988 -1.0491 33 1 1.7979 -13.5055 -1.3139 34 1 3.2544 -11.5332 -1.1004 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153535894.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:26 Heat of formation + Delta-G solvation = -95.427740 kcal Electronic energy + Delta-G solvation = -18046.727164 eV Core-core repulsion = 14790.662706 eV Total energy + Delta-G solvation = -3256.064458 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.078 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.92878 -39.80849 -39.46396 -36.45865 -34.62425 -33.29591 -32.18833 -31.58409 -28.92120 -26.74693 -24.15914 -23.83062 -22.65653 -21.74615 -19.24110 -18.87623 -18.29212 -17.43262 -17.34316 -16.76041 -16.62448 -16.61729 -15.92148 -15.59278 -15.42707 -14.97447 -14.63755 -14.38611 -14.33250 -13.89501 -13.61319 -13.42257 -13.29261 -12.89463 -12.77908 -12.61398 -12.27106 -12.14495 -11.99828 -11.98239 -11.24572 -10.93249 -10.59641 -10.21799 -9.88634 -9.49740 -8.40101 -8.30513 -6.85288 -0.07127 0.14794 0.40087 1.33986 1.41451 1.42268 1.58545 2.25397 2.43072 2.46805 3.08671 3.22824 3.60320 3.66451 3.82859 3.83566 3.95984 4.06211 4.16051 4.28434 4.41658 4.54535 4.63889 4.70327 4.83891 5.05820 5.07325 5.08289 5.11614 5.12506 5.32850 5.75187 5.87883 6.23699 6.26840 6.86905 7.54501 8.48304 8.66686 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.049796 B = 0.002356 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.154772 B =11882.807045 C =12414.194818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.027 3.973 3 Si 0.999 3.001 4 H -0.263 1.263 5 H -0.273 1.273 6 H -0.247 1.247 7 C -0.574 4.574 8 H 0.089 0.911 9 C 0.536 3.464 10 O -0.634 6.634 11 N -0.756 5.756 12 C 0.139 3.861 13 C -0.096 4.096 14 C -0.102 4.102 15 S -0.105 6.105 16 C -0.105 4.105 17 C -0.115 4.115 18 C -0.137 4.137 19 C 0.073 3.927 20 F -0.146 7.146 21 C -0.131 4.131 22 C -0.077 4.077 23 H 0.275 0.725 24 H 0.397 0.603 25 H 0.036 0.964 26 H 0.037 0.963 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.142 0.858 32 H 0.151 0.849 33 H 0.162 0.838 34 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.398 -22.298 -2.474 23.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.188 4.188 3 Si 0.818 3.182 4 H -0.188 1.188 5 H -0.198 1.198 6 H -0.170 1.170 7 C -0.611 4.611 8 H 0.107 0.893 9 C 0.340 3.660 10 O -0.522 6.522 11 N -0.411 5.411 12 C 0.013 3.987 13 C -0.135 4.135 14 C -0.250 4.250 15 S 0.140 5.860 16 C -0.219 4.219 17 C -0.139 4.139 18 C -0.157 4.157 19 C 0.052 3.948 20 F -0.125 7.125 21 C -0.151 4.151 22 C -0.100 4.100 23 H 0.084 0.916 24 H 0.231 0.769 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.159 0.841 32 H 0.169 0.831 33 H 0.180 0.820 34 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 6.570 -22.101 -2.454 23.187 hybrid contribution -1.329 0.386 -0.024 1.384 sum 5.241 -21.715 -2.478 22.476 Atomic orbital electron populations 1.70193 1.09600 1.28984 1.36467 1.27006 0.95520 1.05076 0.91193 0.84987 0.78940 0.75072 0.79166 1.18797 1.19829 1.17039 1.21452 0.95305 0.90262 1.54041 0.89271 1.18631 0.86783 0.84381 0.76191 1.90550 1.16287 1.87638 1.57706 1.45789 1.09476 1.05560 1.80321 1.20889 0.94597 0.83753 0.99460 1.21311 0.97545 0.90203 1.04426 1.23587 1.00141 0.94640 1.06658 1.85491 1.12760 0.96838 1.90866 1.22028 0.96625 0.98056 1.05144 1.21263 0.91892 0.99799 1.00896 1.21262 1.01922 0.90756 1.01787 1.17920 0.89078 0.83278 1.04571 1.91488 1.73834 1.53536 1.93633 1.21325 0.91060 1.01166 1.01579 1.20869 1.01183 0.89301 0.98664 0.91550 0.76886 0.94554 0.94503 0.89595 0.89615 0.88418 0.88399 0.84052 0.83124 0.81997 0.82716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.37 11.85 21.84 0.26 -50.12 16 2 C 0.03 1.50 5.49 85.31 0.47 1.97 16 3 Si 1.00 40.55 29.56 68.60 2.03 42.58 16 4 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 5 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 6 H -0.25 -9.25 7.11 99.48 0.71 -8.54 16 7 C -0.57 -32.27 9.54 24.83 0.24 -32.03 16 8 H 0.09 4.46 7.85 -2.91 -0.02 4.44 16 9 C 0.54 30.91 7.74 86.36 0.67 31.58 16 10 O -0.63 -42.49 15.05 -4.31 -0.06 -42.55 16 11 N -0.76 -32.95 5.55 -467.41 -2.59 -35.54 16 12 C 0.14 5.01 5.67 86.38 0.49 5.50 16 13 C -0.10 -2.31 5.34 30.59 0.16 -2.14 16 14 C -0.10 -2.05 4.33 71.98 0.31 -1.74 16 15 S -0.11 -2.02 21.92 -56.49 -1.24 -3.26 16 16 C -0.11 -1.96 6.11 22.61 0.14 -1.82 16 17 C -0.11 -2.08 9.36 22.40 0.21 -1.87 16 18 C -0.14 -2.37 10.02 22.29 0.22 -2.15 16 19 C 0.07 1.30 7.30 22.39 0.16 1.47 16 20 F -0.15 -2.81 17.26 44.97 0.78 -2.04 16 21 C -0.13 -1.94 10.02 22.29 0.22 -1.71 16 22 C -0.08 -1.19 9.79 22.40 0.22 -0.97 16 23 H 0.27 15.18 8.29 -92.71 -0.77 14.41 16 24 H 0.40 14.60 8.45 -92.71 -0.78 13.81 16 25 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 26 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.10 1.89 7.73 -2.39 -0.02 1.87 16 30 H 0.10 1.89 7.76 -2.39 -0.02 1.87 16 31 H 0.14 2.34 5.88 -2.91 -0.02 2.32 16 32 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 33 H 0.16 1.57 8.06 -2.91 -0.02 1.55 16 34 H 0.16 1.81 8.06 -2.91 -0.02 1.79 16 Total: -1.00 -75.16 315.94 3.03 -72.13 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: 0.34 Total: 22.72 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: 3.52 Total: -3.93 kcal Atomic # 7 Polarization: -83.32 SS G_CDS: -2.34 Total: -85.66 kcal Atomic # 8 Polarization: -42.49 SS G_CDS: -0.06 Total: -42.55 kcal Atomic # 9 Polarization: -2.81 SS G_CDS: 0.78 Total: -2.04 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 2.03 Total: 42.58 kcal Atomic # 16 Polarization: -2.02 SS G_CDS: -1.24 Total: -3.26 kcal Total: -75.16 3.03 -72.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153535894.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.295 kcal (2) G-P(sol) polarization free energy of solvation -75.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds