Wall clock time and date at job start Tue Mar 31 2020 06:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42903 * 109.47319 * 2 1 4 4 C 1.52996 * 109.47386 * 120.00389 * 2 1 3 5 5 N 1.46505 * 109.47112 * 304.99944 * 4 2 1 6 6 C 1.34779 * 120.00139 * 180.02562 * 5 4 2 7 7 O 1.21691 * 119.99470 * 0.02562 * 6 5 4 8 8 C 1.46369 * 119.99910 * 179.97438 * 6 5 4 9 9 H 1.08001 * 120.00189 * 359.97438 * 8 6 5 10 10 C 1.40050 * 119.99927 * 179.97438 * 8 6 5 11 11 N 1.30671 * 119.99838 * 0.02562 * 10 8 6 12 12 Si 1.86799 * 120.00278 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47003 * 90.00025 * 12 10 8 14 14 H 1.48496 * 109.47331 * 210.00198 * 12 10 8 15 15 H 1.48504 * 109.47014 * 330.00059 * 12 10 8 16 16 C 1.50706 * 109.47155 * 240.00214 * 2 1 3 17 17 C 1.38264 * 119.99067 * 89.99492 * 16 2 1 18 18 C 1.38224 * 120.02445 * 180.02562 * 17 16 2 19 19 C 1.38237 * 120.01313 * 0.26351 * 18 17 16 20 20 C 1.38338 * 119.98297 * 359.50743 * 19 18 17 21 21 Cl 1.73597 * 120.00852 * 180.25600 * 20 19 18 22 22 C 1.38189 * 119.99237 * 270.02386 * 16 2 1 23 23 H 1.08997 * 109.47239 * 179.97438 * 1 2 3 24 24 H 1.09009 * 109.46612 * 299.99606 * 1 2 3 25 25 H 1.08995 * 109.47349 * 59.99478 * 1 2 3 26 26 H 0.96701 * 114.00223 * 179.97438 * 3 2 1 27 27 H 1.08998 * 109.47459 * 64.99573 * 4 2 1 28 28 H 1.09002 * 109.47244 * 184.99896 * 4 2 1 29 29 H 0.97000 * 119.99531 * 359.97438 * 5 4 2 30 30 H 0.97000 * 120.00188 * 180.02562 * 11 10 8 31 31 H 1.07997 * 119.98741 * 359.97438 * 17 16 2 32 32 H 1.08002 * 119.99032 * 179.97438 * 18 17 16 33 33 H 1.07995 * 120.00242 * 179.74655 * 19 18 17 34 34 H 1.08000 * 120.00840 * 359.97438 * 22 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 1.4559 -0.1038 2.4424 6 6 1.7649 -0.5770 3.6660 7 8 2.5294 -1.5169 3.7795 8 6 1.1817 0.0404 4.8581 9 1 0.5041 0.8754 4.7573 10 6 1.5023 -0.4517 6.1295 11 7 2.3225 -1.4616 6.2515 12 14 0.7587 0.3366 7.6510 13 1 -0.5204 -0.3403 7.9842 14 1 1.7018 0.2011 8.7899 15 1 0.5034 1.7758 7.3883 16 6 2.0323 -0.7104 -1.2305 17 6 2.2626 0.0009 -2.3936 18 6 2.7229 -0.6500 -3.5228 19 6 2.9480 -2.0136 -3.4914 20 6 2.7223 -2.7249 -2.3266 21 17 3.0111 -4.4362 -2.2845 22 6 2.2621 -2.0726 -1.1963 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 2.9704 1.4236 0.0004 27 1 1.7517 -1.7715 1.2055 28 1 3.1264 -0.6444 1.2950 29 1 0.8474 0.6462 2.3518 30 1 2.5443 -1.8027 7.1320 31 1 2.0820 1.0653 -2.4200 32 1 2.9022 -0.0939 -4.4311 33 1 3.3037 -2.5226 -4.3749 34 1 2.0822 -2.6281 -0.2878 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187499900.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:37 Heat of formation + Delta-G solvation = -100.820118 kcal Electronic energy + Delta-G solvation = -19633.935464 eV Core-core repulsion = 16363.220680 eV Total energy + Delta-G solvation = -3270.714785 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.17750 -39.44880 -38.29572 -37.29703 -35.08834 -34.43643 -33.12558 -31.68308 -30.40719 -28.92922 -26.99939 -24.37373 -23.46435 -21.80579 -21.27355 -19.40017 -18.75976 -17.61229 -17.26336 -16.63186 -16.35756 -16.04361 -15.97748 -15.59883 -15.06524 -14.80829 -14.57166 -14.33101 -14.23448 -13.44784 -13.36253 -13.13125 -12.95953 -12.74047 -12.68720 -12.61387 -12.56039 -12.39285 -12.11656 -12.01519 -11.77577 -11.08730 -10.93397 -9.98276 -9.87683 -9.70209 -9.49489 -8.29666 -6.86059 0.12299 0.21393 1.11191 1.40489 1.42010 1.57482 2.24665 2.46530 2.57976 2.93309 3.24676 3.58563 3.61018 3.67619 3.88723 4.02456 4.13187 4.27271 4.40614 4.60724 4.65377 4.71789 4.82423 4.87270 4.96851 5.19417 5.21064 5.31613 5.34193 5.46686 5.79954 5.86885 6.20220 6.25260 6.67711 6.86463 7.53272 8.48194 8.66780 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.024687 B = 0.003970 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.905372 B = 7051.855642 C = 7907.663717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.181 3.819 3 O -0.549 6.549 4 C 0.113 3.887 5 N -0.745 5.745 6 C 0.536 3.464 7 O -0.634 6.634 8 C -0.573 4.573 9 H 0.087 0.913 10 C 0.029 3.971 11 N -0.822 5.822 12 Si 0.998 3.002 13 H -0.261 1.261 14 H -0.273 1.273 15 H -0.248 1.248 16 C -0.105 4.105 17 C -0.094 4.094 18 C -0.099 4.099 19 C -0.109 4.109 20 C -0.047 4.047 21 Cl -0.079 7.079 22 C -0.121 4.121 23 H 0.069 0.931 24 H 0.065 0.935 25 H 0.084 0.916 26 H 0.389 0.611 27 H 0.043 0.957 28 H 0.034 0.966 29 H 0.396 0.604 30 H 0.274 0.726 31 H 0.153 0.847 32 H 0.169 0.831 33 H 0.154 0.846 34 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.875 3.849 -20.057 20.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.139 3.861 3 O -0.356 6.356 4 C -0.013 4.013 5 N -0.401 5.401 6 C 0.340 3.660 7 O -0.521 6.521 8 C -0.610 4.610 9 H 0.105 0.895 10 C -0.186 4.186 11 N -0.452 5.452 12 Si 0.818 3.182 13 H -0.186 1.186 14 H -0.198 1.198 15 H -0.172 1.172 16 C -0.106 4.106 17 C -0.112 4.112 18 C -0.117 4.117 19 C -0.127 4.127 20 C -0.073 4.073 21 Cl -0.050 7.050 22 C -0.139 4.139 23 H 0.088 0.912 24 H 0.084 0.916 25 H 0.103 0.897 26 H 0.238 0.762 27 H 0.062 0.938 28 H 0.052 0.948 29 H 0.231 0.769 30 H 0.084 0.916 31 H 0.170 0.830 32 H 0.186 0.814 33 H 0.172 0.828 34 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -1.834 3.024 -19.895 20.207 hybrid contribution 0.396 -0.345 0.971 1.104 sum -1.438 2.679 -18.924 19.166 Atomic orbital electron populations 1.21732 0.90559 1.02979 1.03673 1.19961 0.95752 0.81725 0.88635 1.86501 1.28154 1.24326 1.96613 1.21682 0.96704 0.96694 0.86171 1.45726 1.51991 1.37894 1.04488 1.18637 0.81014 0.82807 0.83494 1.90555 1.41556 1.32986 1.87053 1.21425 1.30373 1.18650 0.90508 0.89486 1.26980 0.93521 0.94072 1.04041 1.70191 1.27963 1.21547 1.25497 0.85011 0.78326 0.79644 0.75259 1.18570 1.19813 1.17169 1.20305 1.00633 0.93038 0.96630 1.21332 0.97069 1.01553 0.91211 1.21512 0.97435 0.93255 0.99481 1.21410 0.99720 0.94978 0.96627 1.21055 1.04725 0.85132 0.96421 1.98371 1.94752 1.13089 1.98784 1.21084 1.00173 0.94953 0.97733 0.91165 0.91620 0.89703 0.76192 0.93848 0.94787 0.76894 0.91588 0.82969 0.81378 0.82793 0.86500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.40 8.60 71.98 0.62 -2.78 16 2 C 0.18 5.01 0.90 -11.54 -0.01 5.00 16 3 O -0.55 -13.97 11.91 -148.98 -1.77 -15.74 16 4 C 0.11 4.38 4.29 86.38 0.37 4.75 16 5 N -0.75 -33.91 5.18 -467.40 -2.42 -36.33 16 6 C 0.54 31.62 7.75 86.36 0.67 32.29 16 7 O -0.63 -43.22 15.02 -4.32 -0.06 -43.28 16 8 C -0.57 -32.90 9.54 24.83 0.24 -32.66 16 9 H 0.09 4.48 7.85 -2.91 -0.02 4.46 16 10 C 0.03 1.63 5.50 85.31 0.47 2.10 16 11 N -0.82 -51.00 11.83 21.84 0.26 -50.74 16 12 Si 1.00 41.26 29.56 68.60 2.03 43.29 16 13 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 14 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 15 H -0.25 -9.53 7.11 99.48 0.71 -8.82 16 16 C -0.10 -2.55 4.81 -19.87 -0.10 -2.64 16 17 C -0.09 -1.70 9.35 22.27 0.21 -1.50 16 18 C -0.10 -1.46 10.05 22.27 0.22 -1.24 16 19 C -0.11 -1.92 9.83 22.29 0.22 -1.70 16 20 C -0.05 -1.11 6.32 22.33 0.14 -0.97 16 21 Cl -0.08 -1.91 28.96 -2.72 -0.08 -1.99 16 22 C -0.12 -3.28 8.92 22.29 0.20 -3.08 16 23 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 24 H 0.06 1.80 6.58 -2.38 -0.02 1.78 16 25 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.39 8.14 9.04 -74.06 -0.67 7.48 16 27 H 0.04 1.83 6.21 -2.39 -0.01 1.81 16 28 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.40 15.96 6.97 -92.71 -0.65 15.31 16 30 H 0.27 15.39 8.29 -92.71 -0.77 14.62 16 31 H 0.15 2.27 7.48 -2.91 -0.02 2.25 16 32 H 0.17 1.28 8.06 -2.91 -0.02 1.26 16 33 H 0.15 1.98 8.06 -2.91 -0.02 1.95 16 34 H 0.12 3.69 6.05 -2.91 -0.02 3.67 16 Total: -1.00 -77.27 308.64 1.03 -76.24 By element: Atomic # 1 Polarization: 31.16 SS G_CDS: -0.16 Total: 31.00 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: 3.25 Total: -2.44 kcal Atomic # 7 Polarization: -84.91 SS G_CDS: -2.17 Total: -87.07 kcal Atomic # 8 Polarization: -57.19 SS G_CDS: -1.84 Total: -59.03 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.29 kcal Atomic # 17 Polarization: -1.91 SS G_CDS: -0.08 Total: -1.99 kcal Total: -77.27 1.03 -76.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187499900.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.584 kcal (2) G-P(sol) polarization free energy of solvation -77.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds