Wall clock time and date at job start Tue Mar 31 2020 05:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00382 * 2 1 4 4 H 1.48507 * 109.46867 * 239.99675 * 3 2 1 5 5 H 1.48500 * 109.46847 * 359.97438 * 3 2 1 6 6 H 1.48489 * 109.47464 * 119.99475 * 3 2 1 7 7 C 1.37878 * 119.99397 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99408 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00403 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47067 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47117 * 180.02562 * 10 9 7 12 12 O 1.45197 * 109.47398 * 180.02562 * 11 10 9 13 13 C 1.34774 * 117.00273 * 179.97438 * 12 11 10 14 14 O 1.21524 * 119.99583 * 359.97438 * 13 12 11 15 15 C 1.47289 * 119.99962 * 179.97438 * 13 12 11 16 16 C 1.39826 * 120.20961 * 5.91145 * 15 13 12 17 17 C 1.37707 * 119.94214 * 180.02562 * 16 15 13 18 18 C 1.38637 * 120.36684 * 0.03720 * 17 16 15 19 19 C 1.38025 * 120.42776 * 359.97438 * 18 17 16 20 20 Cl 1.73605 * 119.97672 * 179.97438 * 19 18 17 21 21 C 1.39068 * 120.04729 * 359.97438 * 19 18 17 22 22 N 1.38895 * 120.18500 * 179.72153 * 21 19 18 23 23 H 0.97001 * 119.99529 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.46755 * 59.99734 * 9 7 2 25 25 H 1.08993 * 109.47091 * 299.99799 * 9 7 2 26 26 H 1.08995 * 109.47451 * 60.00281 * 10 9 7 27 27 H 1.09005 * 109.47442 * 299.99604 * 10 9 7 28 28 H 1.09001 * 109.47358 * 59.99484 * 11 10 9 29 29 H 1.09006 * 109.47113 * 299.99778 * 11 10 9 30 30 H 1.08000 * 120.03143 * 0.03836 * 16 15 13 31 31 H 1.07996 * 119.81658 * 180.02562 * 17 16 15 32 32 H 1.08000 * 119.78196 * 179.97438 * 18 17 16 33 33 H 0.96999 * 119.99686 * 354.42654 * 22 21 19 34 34 H 0.96996 * 120.00153 * 174.42181 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4800 -4.9871 -0.0001 12 8 2.4235 -6.0908 0.0005 13 6 1.9083 -7.3362 0.0006 14 8 0.7035 -7.4953 0.0006 15 6 2.8055 -8.5043 0.0006 16 6 4.1873 -8.3301 0.1250 17 6 5.0211 -9.4260 0.1239 18 6 4.4986 -10.7041 -0.0009 19 6 3.1370 -10.8936 -0.1249 20 17 2.4954 -12.4991 -0.2810 21 6 2.2788 -9.7993 -0.1247 22 7 0.9087 -9.9863 -0.2551 23 1 -0.4849 0.8401 -0.0004 24 1 0.6246 -2.5570 -0.8896 25 1 0.6239 -2.5567 0.8903 26 1 2.8717 -3.6045 0.8905 27 1 2.8717 -3.6045 -0.8895 28 1 0.8536 -5.0446 -0.8903 29 1 0.8531 -5.0451 0.8897 30 1 4.6003 -7.3369 0.2221 31 1 6.0880 -9.2892 0.2205 32 1 5.1612 -11.5569 -0.0011 33 1 0.5545 -10.8727 -0.4275 34 1 0.3061 -9.2306 -0.1737 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000211577544.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:41 Heat of formation + Delta-G solvation = -83.086804 kcal Electronic energy + Delta-G solvation = -18821.579999 eV Core-core repulsion = 15551.634189 eV Total energy + Delta-G solvation = -3269.945810 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.74558 -39.12785 -36.78840 -36.57967 -34.75255 -33.99444 -31.93036 -31.23026 -29.06860 -27.14870 -24.63466 -23.21909 -22.42371 -21.13100 -20.34507 -18.13423 -17.36037 -17.06040 -16.88498 -16.34919 -16.15726 -15.16674 -14.56485 -14.51069 -14.47793 -14.33752 -13.76813 -13.32520 -12.54648 -12.26250 -12.20261 -11.97926 -11.85783 -11.84068 -11.31841 -11.09634 -10.97261 -10.70216 -10.66782 -10.44102 -10.39090 -9.75835 -9.53388 -9.21451 -9.19736 -8.40076 -7.93450 -6.05057 -4.08247 0.47350 1.14062 1.79223 2.43377 2.83989 3.31535 3.35953 3.38432 3.49025 3.56050 4.39522 4.45271 4.64091 4.81655 4.99301 5.15535 5.30935 5.35629 5.54055 5.58065 5.64826 5.88515 5.97141 6.09854 6.30396 6.44383 6.50920 6.74970 6.94484 7.06336 7.57261 7.58452 7.68881 7.86105 7.93076 8.33922 8.97787 9.56117 11.06392 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.045429 B = 0.002681 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.197719 B =10441.460982 C =11025.389313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.024 3.976 10 C -0.109 4.109 11 C 0.069 3.931 12 O -0.348 6.348 13 C 0.520 3.480 14 O -0.526 6.526 15 C -0.208 4.208 16 C -0.001 4.001 17 C -0.189 4.189 18 C -0.023 4.023 19 C -0.139 4.139 20 Cl -0.069 7.069 21 C 0.296 3.704 22 N -0.846 5.846 23 H 0.262 0.738 24 H 0.019 0.981 25 H 0.019 0.981 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.146 0.854 31 H 0.137 0.863 32 H 0.137 0.863 33 H 0.398 0.602 34 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.788 -24.154 -0.173 25.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.013 4.013 10 C -0.147 4.147 11 C -0.004 4.004 12 O -0.264 6.264 13 C 0.368 3.632 14 O -0.417 6.417 15 C -0.215 4.215 16 C -0.020 4.020 17 C -0.209 4.209 18 C -0.043 4.043 19 C -0.171 4.171 20 Cl -0.041 7.041 21 C 0.181 3.819 22 N -0.393 5.393 23 H 0.072 0.928 24 H 0.038 0.962 25 H 0.038 0.962 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.164 0.836 31 H 0.155 0.845 32 H 0.155 0.845 33 H 0.227 0.773 34 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 7.141 -24.086 -0.184 25.123 hybrid contribution -0.201 0.687 -0.061 0.719 sum 6.940 -23.399 -0.245 24.407 Atomic orbital electron populations 1.69955 1.06102 1.26904 1.50426 1.25031 0.94883 0.99376 0.95165 0.86599 0.79532 0.82854 0.78683 1.20163 1.21264 1.20157 1.21132 0.93095 0.90672 1.51176 0.92453 1.19042 0.93826 0.90712 0.97684 1.21775 0.99975 0.90869 1.02047 1.23565 0.91195 0.83350 1.02300 1.86551 1.42191 1.14563 1.83081 1.20768 0.86483 0.83790 0.72186 1.90460 1.16716 1.85824 1.48732 1.18462 0.93886 0.88780 1.20388 1.21438 0.90925 1.00374 0.89221 1.20842 1.00497 0.91159 1.08436 1.21074 0.92248 0.98401 0.92558 1.20173 0.93571 0.84613 1.18718 1.98342 1.86859 1.21953 1.96899 1.17350 0.85155 0.90649 0.88729 1.43584 1.04088 1.15213 1.76456 0.92816 0.96240 0.96225 0.92054 0.92063 0.91356 0.91347 0.83625 0.84494 0.84542 0.77294 0.73593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.71 13.29 55.43 0.74 -25.97 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.62 4.97 -27.89 -0.14 0.48 16 10 C -0.11 -2.21 5.53 -26.73 -0.15 -2.36 16 11 C 0.07 1.24 5.48 37.16 0.20 1.44 16 12 O -0.35 -5.68 9.49 -40.69 -0.39 -6.07 16 13 C 0.52 8.01 7.87 34.41 0.27 8.29 16 14 O -0.53 -8.80 13.44 -19.28 -0.26 -9.06 16 15 C -0.21 -2.64 5.89 -104.82 -0.62 -3.26 16 16 C 0.00 -0.01 9.61 -39.18 -0.38 -0.38 16 17 C -0.19 -1.55 10.02 -39.63 -0.40 -1.95 16 18 C -0.02 -0.19 9.81 -39.51 -0.39 -0.58 16 19 C -0.14 -1.38 6.33 -39.35 -0.25 -1.63 16 20 Cl -0.07 -0.60 27.60 -51.86 -1.43 -2.03 16 21 C 0.30 3.45 6.76 -83.55 -0.57 2.89 16 22 N -0.85 -9.39 8.88 32.58 0.29 -9.10 16 23 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 24 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.15 1.39 7.62 -52.49 -0.40 0.99 16 31 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 32 H 0.14 0.79 8.06 -52.49 -0.42 0.36 16 33 H 0.40 3.59 7.51 -40.82 -0.31 3.28 16 34 H 0.42 5.28 5.35 -40.94 -0.22 5.06 16 LS Contribution 311.88 15.07 4.70 4.70 Total: -1.00 -30.44 311.88 -8.04 -38.48 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -3.85 Total: 3.09 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: -2.82 Total: -10.44 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: 1.03 Total: -35.07 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.65 Total: -15.13 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -1.43 Total: -2.03 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.44 -8.04 -38.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211577544.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.608 kcal (2) G-P(sol) polarization free energy of solvation -30.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds