Wall clock time and date at job start Tue Mar 31 2020 05:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00103 * 2 1 4 4 H 1.48502 * 109.47160 * 269.99853 * 3 2 1 5 5 H 1.48496 * 109.47116 * 30.00008 * 3 2 1 6 6 H 1.48498 * 109.47167 * 149.99885 * 3 2 1 7 7 C 1.37874 * 119.99815 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99903 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00143 * 179.97438 * 7 2 1 10 10 N 1.46507 * 109.47079 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99538 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00384 * 0.02562 * 11 10 9 13 13 C 1.50705 * 119.99723 * 180.02562 * 11 10 9 14 14 C 1.53000 * 109.46929 * 180.02562 * 13 11 10 15 15 O 1.42898 * 109.46896 * 179.97438 * 14 13 11 16 16 C 1.35929 * 117.00101 * 180.02562 * 15 14 13 17 17 C 1.38701 * 120.05648 * 359.95940 * 16 15 14 18 18 C 1.38153 * 119.95853 * 180.02562 * 17 16 15 19 19 C 1.38285 * 120.07157 * 0.02562 * 18 17 16 20 20 C 1.38238 * 120.11971 * 0.02562 * 19 18 17 21 21 C 1.38255 * 120.04624 * 359.94924 * 20 19 18 22 22 Cl 1.73604 * 120.04140 * 180.02562 * 21 20 19 23 23 H 0.96998 * 119.99440 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.46806 * 60.00275 * 9 7 2 25 25 H 1.09001 * 109.47449 * 300.00282 * 9 7 2 26 26 H 0.96994 * 120.00016 * 0.02562 * 10 9 7 27 27 H 1.08993 * 109.46757 * 59.99785 * 13 11 10 28 28 H 1.09001 * 109.46999 * 300.00202 * 13 11 10 29 29 H 1.09004 * 109.47148 * 60.00126 * 14 13 11 30 30 H 1.08996 * 109.47021 * 299.99734 * 14 13 11 31 31 H 1.08003 * 120.02367 * 0.04181 * 17 16 15 32 32 H 1.08001 * 119.96476 * 180.29683 * 18 17 16 33 33 H 1.08006 * 119.93616 * 179.97438 * 19 18 17 34 34 H 1.08008 * 119.97717 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9998 -2.5754 0.0013 11 6 5.3248 -2.8217 0.0016 12 8 6.1130 -1.8999 0.0012 13 6 5.8272 -4.2426 0.0024 14 6 7.3572 -4.2426 0.0032 15 8 7.8334 -5.5899 0.0046 16 6 9.1810 -5.7680 0.0060 17 6 10.0271 -4.6689 0.0052 18 6 11.3964 -4.8524 0.0061 19 6 11.9242 -6.1305 0.0073 20 6 11.0839 -7.2281 0.0070 21 6 9.7128 -7.0502 0.0066 22 17 8.6576 -8.4287 0.0069 23 1 -0.4849 0.8401 -0.0004 24 1 3.8752 -0.6797 0.8895 25 1 3.8746 -0.6809 -0.8905 26 1 3.3694 -3.3126 0.0020 27 1 5.4639 -4.7568 -0.8873 28 1 5.4637 -4.7559 0.8926 29 1 7.7200 -3.7284 0.8932 30 1 7.7209 -3.7291 -0.8868 31 1 9.6157 -3.6703 0.0042 32 1 12.0552 -3.9966 0.0104 33 1 12.9951 -6.2714 0.0076 34 1 11.4987 -8.2254 0.0075 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260030481.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:43 Heat of formation + Delta-G solvation = -65.762141 kcal Electronic energy + Delta-G solvation = -18647.658102 eV Core-core repulsion = 15378.463545 eV Total energy + Delta-G solvation = -3269.194557 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.45725 -39.13471 -37.72525 -36.54565 -34.44013 -32.52848 -32.08432 -31.09684 -29.84575 -28.00836 -24.85581 -22.89310 -22.42091 -21.52743 -19.92336 -18.73591 -17.23390 -16.62910 -16.49978 -16.31066 -15.82031 -15.26659 -14.89613 -14.86886 -14.19493 -14.00037 -13.70160 -13.64031 -12.94392 -12.68465 -12.37394 -12.21957 -12.03098 -11.92627 -11.65433 -11.27786 -11.05846 -10.98954 -10.89619 -10.81046 -10.02208 -9.55725 -9.40524 -9.20364 -8.83086 -8.46032 -8.26271 -6.25601 -4.28486 0.83284 1.02514 1.97164 2.75764 3.06758 3.23354 3.30278 3.32592 3.37553 4.02905 4.29272 4.45965 4.52840 4.78814 4.81837 4.90102 4.93503 5.09504 5.13945 5.22906 5.41215 5.50923 5.68347 5.69473 5.80981 5.89987 6.10391 6.33409 6.72428 6.99769 7.05488 7.10872 7.31987 8.04407 8.42436 8.67568 8.80524 9.33788 10.86306 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.034927 B = 0.002832 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.468845 B = 9883.800273 C =10659.520475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.546 4.546 8 H 0.080 0.920 9 C 0.220 3.780 10 N -0.701 5.701 11 C 0.506 3.494 12 O -0.562 6.562 13 C -0.140 4.140 14 C 0.075 3.925 15 O -0.305 6.305 16 C 0.147 3.853 17 C -0.198 4.198 18 C -0.074 4.074 19 C -0.151 4.151 20 C -0.075 4.075 21 C -0.073 4.073 22 Cl -0.059 7.059 23 H 0.268 0.732 24 H 0.026 0.974 25 H 0.022 0.978 26 H 0.399 0.601 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.142 0.858 32 H 0.131 0.869 33 H 0.132 0.868 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.942 -14.480 0.041 26.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.126 4.126 3 Si 0.704 3.296 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.584 4.584 8 H 0.098 0.902 9 C 0.098 3.902 10 N -0.349 5.349 11 C 0.291 3.709 12 O -0.442 6.442 13 C -0.181 4.181 14 C 0.000 4.000 15 O -0.218 6.218 16 C 0.100 3.900 17 C -0.217 4.217 18 C -0.093 4.093 19 C -0.170 4.170 20 C -0.094 4.094 21 C -0.101 4.101 22 Cl -0.030 7.030 23 H 0.078 0.922 24 H 0.044 0.956 25 H 0.040 0.960 26 H 0.233 0.767 27 H 0.121 0.879 28 H 0.121 0.879 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.159 0.841 32 H 0.149 0.851 33 H 0.149 0.851 34 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 22.020 -13.934 0.044 26.058 hybrid contribution -0.104 0.644 -0.024 0.653 sum 21.916 -13.290 0.020 25.631 Atomic orbital electron populations 1.69881 1.06219 1.27488 1.49228 1.24803 0.94805 0.99198 0.93826 0.86808 0.80542 0.83220 0.79060 1.19823 1.20850 1.18530 1.21084 0.88444 0.95300 1.53533 0.90175 1.19530 0.95361 0.78446 0.96885 1.46166 1.05526 1.11333 1.71861 1.20140 0.83445 0.89970 0.77366 1.90665 1.55519 1.46461 1.51591 1.21479 0.94250 0.96367 1.05960 1.22543 0.94149 0.80146 1.03175 1.86077 1.17788 1.30221 1.87757 1.18688 0.83478 0.92297 0.95572 1.21407 0.94251 0.98458 1.07548 1.21094 0.94408 0.97607 0.96148 1.21022 0.99976 0.91904 1.04091 1.20909 0.90124 1.00232 0.98136 1.20223 0.91393 0.86385 1.12051 1.98369 1.66174 1.41375 1.97104 0.92199 0.95583 0.96035 0.76692 0.87901 0.87905 0.90802 0.90795 0.84063 0.85092 0.85052 0.84462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.22 13.96 55.43 0.77 -25.44 16 2 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 3 Si 0.88 21.13 27.47 -169.99 -4.67 16.46 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 7 C -0.55 -14.74 9.83 -34.44 -0.34 -15.08 16 8 H 0.08 2.25 7.84 -52.48 -0.41 1.84 16 9 C 0.22 5.27 4.50 -5.19 -0.02 5.25 16 10 N -0.70 -13.59 5.55 -61.47 -0.34 -13.93 16 11 C 0.51 8.99 7.83 -10.98 -0.09 8.90 16 12 O -0.56 -11.90 15.98 5.56 0.09 -11.81 16 13 C -0.14 -1.79 6.07 -27.88 -0.17 -1.96 16 14 C 0.08 0.94 4.03 37.16 0.15 1.09 16 15 O -0.31 -3.86 9.60 -19.52 -0.19 -4.05 16 16 C 0.15 1.73 6.68 -39.20 -0.26 1.47 16 17 C -0.20 -2.04 9.04 -39.44 -0.36 -2.39 16 18 C -0.07 -0.62 10.04 -39.60 -0.40 -1.02 16 19 C -0.15 -1.15 10.04 -39.56 -0.40 -1.55 16 20 C -0.08 -0.65 9.83 -39.58 -0.39 -1.04 16 21 C -0.07 -0.80 6.33 -39.36 -0.25 -1.05 16 22 Cl -0.06 -0.65 28.51 -51.86 -1.48 -2.13 16 23 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 24 H 0.03 0.66 7.20 -51.93 -0.37 0.29 16 25 H 0.02 0.54 7.57 -51.93 -0.39 0.15 16 26 H 0.40 6.77 8.32 -40.82 -0.34 6.43 16 27 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 29 H 0.07 0.93 7.62 -51.93 -0.40 0.53 16 30 H 0.07 0.93 7.62 -51.93 -0.40 0.53 16 31 H 0.14 1.40 6.30 -52.48 -0.33 1.07 16 32 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 33 H 0.13 0.66 8.06 -52.48 -0.42 0.23 16 34 H 0.14 0.88 8.06 -52.48 -0.42 0.46 16 LS Contribution 312.74 15.07 4.71 4.71 Total: -1.00 -31.68 312.74 -7.64 -39.32 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -3.92 Total: 2.18 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: -2.62 Total: -5.31 kcal Atomic # 7 Polarization: -39.81 SS G_CDS: 0.43 Total: -39.38 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -0.10 Total: -15.86 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.67 Total: 16.46 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.48 Total: -2.13 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.68 -7.64 -39.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260030481.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.444 kcal (2) G-P(sol) polarization free energy of solvation -31.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds