Wall clock time and date at job start Tue Mar 31 2020 06:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38160 * 120.02332 * 2 1 4 4 C 1.38340 * 120.04509 * 179.97438 * 3 2 1 5 5 Cl 1.73602 * 119.96183 * 180.02562 * 4 3 2 6 6 C 1.38394 * 120.08224 * 359.72033 * 4 3 2 7 7 C 1.38119 * 120.04072 * 0.56047 * 6 4 3 8 8 C 1.38701 * 120.01786 * 179.97438 * 2 1 3 9 9 O 1.35921 * 120.04373 * 0.02562 * 8 2 1 10 10 C 1.42897 * 116.99896 * 180.02562 * 9 8 2 11 11 C 1.50700 * 109.47370 * 179.97438 * 10 9 8 12 12 O 1.21294 * 119.99735 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00394 * 179.97438 * 11 10 9 14 14 C 1.46498 * 119.99803 * 359.97438 * 13 11 10 15 15 C 1.37095 * 120.00098 * 180.02562 * 13 11 10 16 16 H 1.08006 * 119.99902 * 322.82223 * 15 13 11 17 17 C 1.38946 * 120.00259 * 142.82459 * 15 13 11 18 18 N 1.31412 * 120.00346 * 158.40514 * 17 15 13 19 19 Si 1.86801 * 119.99868 * 338.40859 * 17 15 13 20 20 H 1.48501 * 109.47148 * 95.71794 * 19 17 15 21 21 H 1.48501 * 109.47194 * 215.71680 * 19 17 15 22 22 H 1.48503 * 109.47108 * 335.71767 * 19 17 15 23 23 H 1.09005 * 109.47092 * 270.02507 * 1 2 3 24 24 H 1.09002 * 109.46654 * 30.02194 * 1 2 3 25 25 H 1.09000 * 109.47008 * 150.02282 * 1 2 3 26 26 H 1.08002 * 119.97920 * 359.95794 * 3 2 1 27 27 H 1.08003 * 119.98015 * 180.27430 * 6 4 3 28 28 H 1.08001 * 120.02005 * 179.71837 * 7 6 4 29 29 H 1.09003 * 109.46954 * 299.99299 * 10 9 8 30 30 H 1.09002 * 109.47766 * 59.99552 * 10 9 8 31 31 H 1.09001 * 109.46927 * 85.13464 * 14 13 11 32 32 H 1.08998 * 109.47219 * 205.13431 * 14 13 11 33 33 H 1.08999 * 109.47125 * 325.13599 * 14 13 11 34 34 H 0.97001 * 120.00366 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5817 1.1967 0.0005 5 17 4.4482 2.7011 0.0012 6 6 4.2759 -0.0005 0.0069 7 6 3.5884 -1.1984 0.0011 8 6 2.2009 -1.2010 0.0005 9 8 1.5226 -2.3788 0.0005 10 6 2.3022 -3.5764 0.0017 11 6 1.3855 -4.7726 0.0021 12 8 0.1829 -4.6149 0.0011 13 7 1.9020 -6.0175 0.0027 14 6 3.3546 -6.2078 0.0023 15 6 1.0681 -7.1056 0.0026 16 1 0.1478 -7.0807 0.5674 17 6 1.4068 -8.2404 -0.7241 18 7 0.8755 -9.4018 -0.4145 19 14 2.6174 -8.1153 -2.1411 20 1 3.9783 -8.4669 -1.6620 21 1 2.2150 -9.0528 -3.2203 22 1 2.6214 -6.7268 -2.6677 23 1 -0.3633 0.0004 1.0277 24 1 -0.3633 0.8898 -0.5142 25 1 -0.3633 -0.8902 -0.5135 26 1 1.6584 2.1316 -0.0007 27 1 5.3559 0.0018 0.0118 28 1 4.1304 -2.1325 0.0015 29 1 2.9316 -3.6010 -0.8879 30 1 2.9305 -3.6002 0.8921 31 1 3.7265 -6.1680 1.0261 32 1 3.5938 -7.1777 -0.4337 33 1 3.8242 -5.4193 -0.5858 34 1 1.1122 -10.1941 -0.9215 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263660631.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:09 Heat of formation + Delta-G solvation = -60.023460 kcal Electronic energy + Delta-G solvation = -19519.649306 eV Core-core repulsion = 16250.703597 eV Total energy + Delta-G solvation = -3268.945709 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.52995 -40.38832 -38.59417 -37.20662 -36.72601 -34.22922 -33.82502 -31.15760 -29.91225 -28.12065 -27.79665 -26.41709 -23.48281 -22.65132 -20.88070 -19.29363 -19.08926 -17.78001 -17.72222 -17.37546 -17.07009 -16.80134 -15.85119 -15.57711 -15.43305 -14.73833 -14.54920 -14.41795 -14.19175 -14.03144 -13.80262 -13.69663 -13.53376 -13.40549 -12.77463 -12.68967 -12.55766 -12.30628 -12.21691 -11.84906 -11.71673 -11.62888 -11.08814 -10.47115 -9.93567 -9.79088 -9.08285 -8.55167 -6.20441 0.18656 0.20070 1.18558 1.19353 1.32915 1.45912 1.78639 1.80460 2.15942 2.55613 2.83092 2.96082 3.60566 3.73567 3.81838 3.96895 4.11481 4.13511 4.23958 4.30886 4.44791 4.55076 4.59794 4.77579 4.80055 4.83584 5.02556 5.19541 5.21812 5.36483 5.45883 5.59892 5.97675 6.25666 6.51775 6.86511 7.18971 7.74617 8.61943 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.032695 B = 0.003644 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.198948 B = 7681.569961 C = 8263.127393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.119 4.119 3 C -0.073 4.073 4 C -0.078 4.078 5 Cl -0.068 7.068 6 C -0.072 4.072 7 C -0.195 4.195 8 C 0.112 3.888 9 O -0.312 6.312 10 C 0.057 3.943 11 C 0.452 3.548 12 O -0.606 6.606 13 N -0.475 5.475 14 C 0.049 3.951 15 C -0.342 4.342 16 H 0.042 0.958 17 C 0.011 3.989 18 N -0.909 5.909 19 Si 0.957 3.043 20 H -0.232 1.232 21 H -0.291 1.291 22 H -0.256 1.256 23 H 0.072 0.928 24 H 0.089 0.911 25 H 0.050 0.950 26 H 0.157 0.843 27 H 0.160 0.840 28 H 0.161 0.839 29 H 0.117 0.883 30 H 0.118 0.882 31 H 0.084 0.916 32 H 0.060 0.940 33 H 0.102 0.898 34 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.522 20.500 -0.947 24.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.120 4.120 3 C -0.091 4.091 4 C -0.105 4.105 5 Cl -0.040 7.040 6 C -0.091 4.091 7 C -0.213 4.213 8 C 0.067 3.933 9 O -0.224 6.224 10 C -0.021 4.021 11 C 0.241 3.759 12 O -0.490 6.490 13 N -0.198 5.198 14 C -0.093 4.093 15 C -0.470 4.470 16 H 0.060 0.940 17 C -0.191 4.191 18 N -0.546 5.546 19 Si 0.779 3.221 20 H -0.156 1.156 21 H -0.218 1.218 22 H -0.180 1.180 23 H 0.091 0.909 24 H 0.108 0.892 25 H 0.069 0.931 26 H 0.174 0.826 27 H 0.177 0.823 28 H 0.179 0.821 29 H 0.135 0.865 30 H 0.136 0.864 31 H 0.102 0.898 32 H 0.078 0.922 33 H 0.121 0.879 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 12.778 20.449 -0.954 24.132 hybrid contribution -0.071 -0.661 -0.369 0.760 sum 12.708 19.788 -1.323 23.554 Atomic orbital electron populations 1.20628 0.89744 1.03040 1.02809 1.19409 0.97350 0.89951 1.05266 1.20904 0.92096 0.97856 0.98248 1.20885 0.92456 0.87659 1.09464 1.98358 1.76547 1.31855 1.97199 1.21081 1.01493 0.89427 0.97078 1.21491 0.91901 1.00633 1.07321 1.19348 0.91652 0.85492 0.96851 1.86173 1.35768 1.12231 1.88260 1.22605 0.92766 0.81110 1.05632 1.20809 0.88994 0.84864 0.81213 1.90570 1.18163 1.86031 1.54191 1.43688 1.06582 1.03702 1.65859 1.22406 0.79690 1.03084 1.04089 1.18651 1.05673 0.91754 1.30898 0.93961 1.26244 1.00088 0.93549 0.99238 1.69863 1.45570 0.99555 1.39598 0.85734 0.79251 0.79168 0.77934 1.15640 1.21826 1.17956 0.90940 0.89211 0.93079 0.82585 0.82274 0.82115 0.86546 0.86407 0.89787 0.92192 0.87946 0.90788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.55 9.79 71.24 0.70 -1.85 16 2 C -0.12 -2.93 5.89 -19.77 -0.12 -3.04 16 3 C -0.07 -1.44 9.48 22.28 0.21 -1.23 16 4 C -0.08 -1.47 6.32 22.33 0.14 -1.33 16 5 Cl -0.07 -1.14 28.95 -2.72 -0.08 -1.22 16 6 C -0.07 -1.27 9.82 22.28 0.22 -1.05 16 7 C -0.19 -3.94 9.04 22.36 0.20 -3.74 16 8 C 0.11 3.03 6.66 22.50 0.15 3.18 16 9 O -0.31 -10.72 8.71 -73.62 -0.64 -11.36 16 10 C 0.06 1.75 3.84 71.24 0.27 2.03 16 11 C 0.45 20.86 7.70 87.66 0.68 21.54 16 12 O -0.61 -35.09 16.36 15.96 0.26 -34.83 16 13 N -0.48 -22.19 2.59 -658.89 -1.70 -23.89 16 14 C 0.05 1.59 8.78 127.77 1.12 2.71 16 15 C -0.34 -19.97 9.37 84.04 0.79 -19.18 16 16 H 0.04 2.93 7.90 -2.91 -0.02 2.91 16 17 C 0.01 0.63 5.29 84.93 0.45 1.08 16 18 N -0.91 -53.41 13.96 21.66 0.30 -53.11 16 19 Si 0.96 39.93 24.96 68.60 1.71 41.64 16 20 H -0.23 -8.13 6.69 99.48 0.67 -7.47 16 21 H -0.29 -12.34 7.11 99.48 0.71 -11.63 16 22 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 23 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 24 H 0.09 1.63 8.09 -2.39 -0.02 1.61 16 25 H 0.05 1.53 7.53 -2.39 -0.02 1.51 16 26 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 27 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 28 H 0.16 2.40 6.30 -2.91 -0.02 2.38 16 29 H 0.12 2.77 6.93 -2.39 -0.02 2.75 16 30 H 0.12 2.76 7.63 -2.39 -0.02 2.74 16 31 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.06 2.09 3.42 -2.39 -0.01 2.08 16 33 H 0.10 2.32 6.64 -2.39 -0.02 2.30 16 34 H 0.28 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -77.21 303.57 5.75 -71.46 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: 1.09 Total: 12.20 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: 4.81 Total: -0.89 kcal Atomic # 7 Polarization: -75.60 SS G_CDS: -1.40 Total: -77.00 kcal Atomic # 8 Polarization: -45.81 SS G_CDS: -0.38 Total: -46.19 kcal Atomic # 14 Polarization: 39.93 SS G_CDS: 1.71 Total: 41.64 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -0.08 Total: -1.22 kcal Total: -77.21 5.75 -71.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263660631.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.438 kcal (2) G-P(sol) polarization free energy of solvation -77.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds