Wall clock time and date at job start Tue Mar 31 2020 05:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34821 * 116.99876 * 2 1 4 4 O 1.21543 * 120.00501 * 359.97438 * 3 2 1 5 5 C 1.47018 * 120.00039 * 179.97438 * 3 2 1 6 6 C 1.36680 * 125.16607 * 179.97438 * 5 3 2 7 7 C 1.36775 * 114.73541 * 179.97438 * 6 5 3 8 8 C 1.36626 * 114.75118 * 359.97438 * 7 6 5 9 9 C 1.47205 * 125.15864 * 180.02562 * 8 7 6 10 10 O 1.21620 * 119.99779 * 359.97438 * 9 8 7 11 11 N 1.34775 * 119.99899 * 180.02562 * 9 8 7 12 12 C 1.46504 * 119.99784 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.46916 * 180.02562 * 12 11 9 14 14 C 1.50705 * 109.47206 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99843 * 359.97438 * 14 13 12 16 16 C 1.37869 * 120.00192 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00187 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99935 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47073 * 60.00210 * 18 16 14 20 20 H 1.48504 * 109.47287 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47515 * 300.00263 * 18 16 14 22 22 S 1.75838 * 125.16120 * 359.97040 * 5 3 2 23 23 H 1.08997 * 109.47446 * 300.00817 * 1 2 3 24 24 H 1.09005 * 109.46733 * 59.99893 * 1 2 3 25 25 H 1.08996 * 109.47533 * 179.97438 * 1 2 3 26 26 H 1.08000 * 122.63454 * 359.95797 * 6 5 3 27 27 H 1.07998 * 122.62491 * 179.73465 * 7 6 5 28 28 H 0.97002 * 120.00362 * 0.02562 * 11 9 8 29 29 H 1.09001 * 109.47052 * 299.99496 * 12 11 9 30 30 H 1.08997 * 109.47162 * 60.00238 * 12 11 9 31 31 H 1.09005 * 109.47205 * 299.99629 * 13 12 11 32 32 H 1.08993 * 109.47749 * 59.99714 * 13 12 11 33 33 H 0.97001 * 120.00275 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0641 1.2013 0.0000 4 8 1.4022 2.2207 -0.0005 5 6 3.5322 1.2783 0.0006 6 6 4.2598 2.4353 0.0001 7 6 5.6161 2.2584 0.0014 8 6 6.0229 0.9542 0.0034 9 6 7.4242 0.5033 0.0056 10 8 8.3256 1.3197 0.0052 11 7 7.7081 -0.8142 0.0070 12 6 9.1028 -1.2629 0.0097 13 6 9.1464 -2.7923 0.0102 14 6 10.5810 -3.2540 0.0136 15 1 11.3815 -2.5290 0.0149 16 6 10.8715 -4.6017 0.0152 17 7 9.8967 -5.4845 0.0131 18 14 12.6497 -5.1739 0.0187 19 1 13.3332 -4.6582 1.2321 20 1 12.6921 -6.6583 0.0205 21 1 13.3375 -4.6600 -1.1929 22 16 4.6187 -0.1043 0.0020 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 3.8000 3.4125 -0.0014 27 1 6.3111 3.0851 -0.0030 28 1 6.9892 -1.4654 0.0062 29 1 9.6075 -0.8858 -0.8797 30 1 9.6044 -0.8845 0.9003 31 1 8.6415 -3.1700 0.8994 32 1 8.6448 -3.1705 -0.8805 33 1 10.1011 -6.4328 0.0138 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273195043.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:32 Heat of formation + Delta-G solvation = -95.639894 kcal Electronic energy + Delta-G solvation = -18500.357712 eV Core-core repulsion = 15231.911266 eV Total energy + Delta-G solvation = -3268.446447 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.67362 -39.55086 -37.66128 -36.57522 -35.01684 -32.95637 -30.99611 -29.68282 -28.12643 -26.06070 -24.55512 -22.34337 -21.61885 -20.90670 -19.29990 -19.02119 -17.55815 -16.78246 -16.74926 -16.26946 -15.98970 -15.18960 -15.08702 -14.64884 -14.36500 -13.93081 -13.69081 -13.37126 -13.21782 -12.73146 -12.62622 -12.43072 -12.31504 -11.36781 -11.29265 -11.20285 -11.06980 -11.00383 -10.70663 -10.42254 -10.09587 -9.63219 -9.33451 -9.24918 -8.94202 -8.68595 -8.43872 -6.13386 -4.16861 -0.25311 1.01303 1.44659 1.68748 2.24027 2.52194 3.22748 3.28906 3.30887 3.33262 3.39602 4.37874 4.42583 4.74105 4.80614 4.82532 4.85936 5.02475 5.15825 5.23744 5.57793 5.70690 5.89744 5.95420 6.21420 6.23378 6.59227 6.68474 7.27885 7.42993 7.53416 7.73004 7.83888 8.18802 8.34024 8.88450 9.48314 10.98127 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.028547 B = 0.003088 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.593880 B = 9064.263208 C =10019.108713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.354 6.354 3 C 0.542 3.458 4 O -0.496 6.496 5 C -0.246 4.246 6 C -0.051 4.051 7 C -0.088 4.088 8 C -0.211 4.211 9 C 0.575 3.425 10 O -0.528 6.528 11 N -0.712 5.712 12 C 0.121 3.879 13 C 0.012 3.988 14 C -0.524 4.524 15 H 0.060 0.940 16 C 0.060 3.940 17 N -0.893 5.893 18 Si 0.898 3.102 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.275 1.275 22 S 0.245 5.755 23 H 0.066 0.934 24 H 0.065 0.935 25 H 0.106 0.894 26 H 0.160 0.840 27 H 0.163 0.837 28 H 0.396 0.604 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.024 0.976 32 H 0.024 0.976 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.904 10.930 -0.034 20.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.270 6.270 3 C 0.385 3.615 4 O -0.386 6.386 5 C -0.366 4.366 6 C -0.085 4.085 7 C -0.120 4.120 8 C -0.334 4.334 9 C 0.358 3.642 10 O -0.406 6.406 11 N -0.362 5.362 12 C -0.001 4.001 13 C -0.026 4.026 14 C -0.563 4.563 15 H 0.078 0.922 16 C -0.142 4.142 17 N -0.532 5.532 18 Si 0.726 3.274 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.201 1.201 22 S 0.515 5.485 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.124 0.876 26 H 0.177 0.823 27 H 0.180 0.820 28 H 0.230 0.770 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.042 0.958 32 H 0.042 0.958 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.698 9.927 -0.034 20.292 hybrid contribution 0.493 0.813 0.002 0.951 sum -17.205 10.740 -0.032 20.282 Atomic orbital electron populations 1.23343 0.75166 1.04184 1.02819 1.86585 1.24183 1.31912 1.84370 1.19739 0.86968 0.81881 0.72911 1.90876 1.65846 1.35894 1.45941 1.23724 0.94052 0.98977 1.19800 1.20563 0.92474 0.98644 0.96829 1.20527 0.95125 0.96353 1.00024 1.25460 0.98245 0.98418 1.11263 1.17098 0.85796 0.83408 0.77849 1.90809 1.46151 1.53308 1.50347 1.46306 1.11387 1.05540 1.72949 1.21868 0.78048 0.98826 1.01341 1.19345 0.98363 0.86835 0.98041 1.20981 0.91587 0.91902 1.51783 0.92204 1.24990 0.97591 0.96748 0.94878 1.69939 1.31615 1.01572 1.50064 0.86556 0.84638 0.77444 0.78805 1.20085 1.21217 1.20082 1.84432 0.92881 1.05650 1.65514 0.91573 0.91582 0.87568 0.82253 0.81953 0.77020 0.91954 0.91950 0.95787 0.95782 0.92710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.57 101.05 1.07 1.32 16 2 O -0.35 -3.57 10.41 -40.82 -0.43 -4.00 16 3 C 0.54 6.24 7.94 34.29 0.27 6.52 16 4 O -0.50 -6.55 16.61 -19.30 -0.32 -6.87 16 5 C -0.25 -2.74 6.46 -36.59 -0.24 -2.97 16 6 C -0.05 -0.52 9.88 -40.67 -0.40 -0.93 16 7 C -0.09 -1.00 9.88 -40.69 -0.40 -1.41 16 8 C -0.21 -2.79 6.46 -36.52 -0.24 -3.02 16 9 C 0.57 9.63 7.80 -12.62 -0.10 9.53 16 10 O -0.53 -10.47 16.82 5.26 0.09 -10.38 16 11 N -0.71 -12.19 5.55 -61.45 -0.34 -12.53 16 12 C 0.12 2.47 5.61 -4.04 -0.02 2.45 16 13 C 0.01 0.28 5.09 -27.88 -0.14 0.14 16 14 C -0.52 -14.18 9.11 -34.44 -0.31 -14.50 16 15 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -25.61 13.29 55.43 0.74 -24.88 16 18 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 S 0.25 2.72 22.17 -107.50 -2.38 0.33 16 23 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 24 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.16 1.35 8.04 -52.49 -0.42 0.93 16 27 H 0.16 1.70 8.04 -52.49 -0.42 1.28 16 28 H 0.40 5.97 7.58 -40.82 -0.31 5.66 16 29 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 316.66 15.07 4.77 4.77 Total: -1.00 -31.89 316.66 -7.16 -39.04 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -3.65 Total: -0.16 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: -0.61 Total: -1.32 kcal Atomic # 7 Polarization: -37.80 SS G_CDS: 0.40 Total: -37.41 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -0.66 Total: -21.25 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: 2.72 SS G_CDS: -2.38 Total: 0.33 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.89 -7.16 -39.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273195043.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.595 kcal (2) G-P(sol) polarization free energy of solvation -31.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds