Wall clock time and date at job start Tue Mar 31 2020 05:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34821 * 116.99876 * 2 1 4 4 O 1.21543 * 120.00501 * 359.97438 * 3 2 1 5 5 C 1.47018 * 120.00039 * 179.97438 * 3 2 1 6 6 C 1.36680 * 125.16607 * 179.97438 * 5 3 2 7 7 C 1.36775 * 114.73541 * 179.97438 * 6 5 3 8 8 C 1.36626 * 114.75118 * 359.97438 * 7 6 5 9 9 C 1.47205 * 125.15864 * 180.02562 * 8 7 6 10 10 O 1.21620 * 119.99779 * 359.97438 * 9 8 7 11 11 N 1.34775 * 119.99899 * 180.02562 * 9 8 7 12 12 C 1.46504 * 119.99784 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.46916 * 180.02562 * 12 11 9 14 14 C 1.50705 * 109.47206 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99843 * 359.97438 * 14 13 12 16 16 C 1.37869 * 120.00192 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00187 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99935 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47073 * 60.00210 * 18 16 14 20 20 H 1.48504 * 109.47287 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47515 * 300.00263 * 18 16 14 22 22 S 1.75838 * 125.16120 * 359.97040 * 5 3 2 23 23 H 1.08997 * 109.47446 * 300.00817 * 1 2 3 24 24 H 1.09005 * 109.46733 * 59.99893 * 1 2 3 25 25 H 1.08996 * 109.47533 * 179.97438 * 1 2 3 26 26 H 1.08000 * 122.63454 * 359.95797 * 6 5 3 27 27 H 1.07998 * 122.62491 * 179.73465 * 7 6 5 28 28 H 0.97002 * 120.00362 * 0.02562 * 11 9 8 29 29 H 1.09001 * 109.47052 * 299.99496 * 12 11 9 30 30 H 1.08997 * 109.47162 * 60.00238 * 12 11 9 31 31 H 1.09005 * 109.47205 * 299.99629 * 13 12 11 32 32 H 1.08993 * 109.47749 * 59.99714 * 13 12 11 33 33 H 0.97001 * 120.00275 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0641 1.2013 0.0000 4 8 1.4022 2.2207 -0.0005 5 6 3.5322 1.2783 0.0006 6 6 4.2598 2.4353 0.0001 7 6 5.6161 2.2584 0.0014 8 6 6.0229 0.9542 0.0034 9 6 7.4242 0.5033 0.0056 10 8 8.3256 1.3197 0.0052 11 7 7.7081 -0.8142 0.0070 12 6 9.1028 -1.2629 0.0097 13 6 9.1464 -2.7923 0.0102 14 6 10.5810 -3.2540 0.0136 15 1 11.3815 -2.5290 0.0149 16 6 10.8715 -4.6017 0.0152 17 7 9.8967 -5.4845 0.0131 18 14 12.6497 -5.1739 0.0187 19 1 13.3332 -4.6582 1.2321 20 1 12.6921 -6.6583 0.0205 21 1 13.3375 -4.6600 -1.1929 22 16 4.6187 -0.1043 0.0020 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 3.8000 3.4125 -0.0014 27 1 6.3111 3.0851 -0.0030 28 1 6.9892 -1.4654 0.0062 29 1 9.6075 -0.8858 -0.8797 30 1 9.6044 -0.8845 0.9003 31 1 8.6415 -3.1700 0.8994 32 1 8.6448 -3.1705 -0.8805 33 1 10.1011 -6.4328 0.0138 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273195043.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:32 Heat of formation + Delta-G solvation = -116.081328 kcal Electronic energy + Delta-G solvation = -18501.244119 eV Core-core repulsion = 15231.911266 eV Total energy + Delta-G solvation = -3269.332854 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.52260 -40.88548 -38.60874 -37.46026 -36.65275 -34.88090 -32.27738 -31.15726 -28.91678 -27.30953 -26.08781 -23.40136 -23.01229 -22.37477 -20.25474 -20.11834 -18.66431 -18.40702 -17.59162 -17.54183 -16.97293 -16.64149 -16.48635 -16.40439 -15.49243 -15.09059 -14.76358 -14.56021 -14.36199 -14.17944 -13.67827 -13.53402 -13.24897 -13.07152 -12.92634 -12.55586 -12.26605 -12.26276 -11.90729 -11.90597 -11.71686 -11.51638 -11.18600 -10.60368 -10.34406 -10.03255 -9.80168 -8.23214 -6.33718 -1.20863 0.08575 0.52817 0.74599 1.43583 1.45453 1.48735 1.53325 1.59990 2.00361 2.00504 2.43451 3.11907 3.55775 3.67370 3.95692 4.16555 4.25994 4.32749 4.42470 4.46938 4.68161 4.77277 4.82660 4.85727 5.07087 5.11816 5.13664 5.44603 5.56487 5.77534 6.14579 6.36217 6.43616 6.78808 6.97317 7.35669 8.88443 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.028547 B = 0.003088 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.593880 B = 9064.263208 C =10019.108713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.360 6.360 3 C 0.543 3.457 4 O -0.515 6.515 5 C -0.247 4.247 6 C -0.046 4.046 7 C -0.071 4.071 8 C -0.241 4.241 9 C 0.580 3.420 10 O -0.563 6.563 11 N -0.711 5.711 12 C 0.139 3.861 13 C 0.020 3.980 14 C -0.547 4.547 15 H 0.061 0.939 16 C 0.008 3.992 17 N -0.926 5.926 18 Si 0.964 3.036 19 H -0.268 1.268 20 H -0.282 1.282 21 H -0.268 1.268 22 S 0.272 5.728 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.134 0.866 26 H 0.181 0.819 27 H 0.172 0.828 28 H 0.406 0.594 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.010 0.990 32 H 0.010 0.990 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.610 11.307 -0.035 21.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.276 6.276 3 C 0.388 3.612 4 O -0.406 6.406 5 C -0.366 4.366 6 C -0.079 4.079 7 C -0.104 4.104 8 C -0.364 4.364 9 C 0.366 3.634 10 O -0.444 6.444 11 N -0.361 5.361 12 C 0.016 3.984 13 C -0.017 4.017 14 C -0.586 4.586 15 H 0.080 0.920 16 C -0.191 4.191 17 N -0.565 5.565 18 Si 0.789 3.211 19 H -0.193 1.193 20 H -0.207 1.207 21 H -0.193 1.193 22 S 0.543 5.457 23 H 0.088 0.912 24 H 0.087 0.913 25 H 0.152 0.848 26 H 0.198 0.802 27 H 0.189 0.811 28 H 0.241 0.759 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.028 0.972 32 H 0.029 0.971 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -18.436 10.284 -0.035 21.110 hybrid contribution 0.558 0.707 0.002 0.900 sum -17.877 10.990 -0.033 20.985 Atomic orbital electron populations 1.23677 0.73242 1.06202 1.03171 1.86579 1.26113 1.31083 1.83854 1.19767 0.86977 0.82055 0.72448 1.90868 1.66236 1.36556 1.46973 1.23925 0.94237 0.99366 1.19114 1.20720 0.91772 0.99399 0.96051 1.20699 0.95779 0.95871 0.98017 1.25072 0.96965 0.99722 1.14593 1.17417 0.87049 0.82518 0.76424 1.90783 1.47763 1.53959 1.51911 1.46095 1.10289 1.06347 1.73396 1.21382 0.79975 0.96278 1.00726 1.19162 0.96863 0.89109 0.96571 1.21424 0.93022 0.92416 1.51698 0.92048 1.25852 1.01917 0.96910 0.94408 1.70046 1.33708 1.01905 1.50871 0.85512 0.79459 0.77029 0.79131 1.19346 1.20721 1.19338 1.84334 0.91550 1.04867 1.64948 0.91247 0.91256 0.84796 0.80165 0.81097 0.75852 0.92592 0.92584 0.97156 0.97149 0.92524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.57 113.37 1.20 1.53 16 2 O -0.36 -6.60 10.41 -57.34 -0.60 -7.20 16 3 C 0.54 11.57 7.94 70.12 0.56 12.13 16 4 O -0.52 -12.75 16.61 19.69 0.33 -12.42 16 5 C -0.25 -5.03 6.46 24.21 0.16 -4.87 16 6 C -0.05 -0.84 9.88 21.56 0.21 -0.63 16 7 C -0.07 -1.49 9.88 21.55 0.21 -1.28 16 8 C -0.24 -6.13 6.46 24.25 0.16 -5.97 16 9 C 0.58 19.30 7.80 86.60 0.68 19.98 16 10 O -0.56 -22.41 16.82 -4.09 -0.07 -22.48 16 11 N -0.71 -24.40 5.55 -466.59 -2.59 -27.00 16 12 C 0.14 5.78 5.61 86.38 0.48 6.26 16 13 C 0.02 1.00 5.09 29.85 0.15 1.15 16 14 C -0.55 -29.85 9.11 25.60 0.23 -29.62 16 15 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 16 C 0.01 0.45 5.46 84.65 0.46 0.91 16 17 N -0.93 -53.41 13.29 21.44 0.28 -53.13 16 18 Si 0.96 42.84 29.54 68.60 2.03 44.87 16 19 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 20 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 21 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 22 S 0.27 5.66 22.17 -56.49 -1.25 4.40 16 23 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 24 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 25 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.18 2.57 8.04 -2.91 -0.02 2.54 16 27 H 0.17 3.29 8.04 -2.91 -0.02 3.27 16 28 H 0.41 12.22 7.58 -92.71 -0.70 11.52 16 29 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 32 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -67.46 316.66 3.07 -64.39 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: 0.44 Total: 8.95 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: 4.50 Total: -0.39 kcal Atomic # 7 Polarization: -77.81 SS G_CDS: -2.31 Total: -80.12 kcal Atomic # 8 Polarization: -41.76 SS G_CDS: -0.34 Total: -42.10 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Atomic # 16 Polarization: 5.66 SS G_CDS: -1.25 Total: 4.40 kcal Total: -67.46 3.07 -64.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273195043.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.690 kcal (2) G-P(sol) polarization free energy of solvation -67.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds