Wall clock time and date at job start Tue Mar 31 2020 06:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47157 * 2 1 4 4 O 1.42903 * 109.47256 * 65.00201 * 3 2 1 5 5 C 1.50707 * 109.47218 * 184.99509 * 3 2 1 6 6 O 1.21286 * 119.99526 * 95.00067 * 5 3 2 7 7 N 1.34771 * 120.00227 * 275.00489 * 5 3 2 8 8 C 1.37094 * 120.00159 * 179.97438 * 7 5 3 9 9 H 1.08004 * 119.99616 * 0.02562 * 8 7 5 10 10 C 1.38947 * 120.00304 * 179.97438 * 8 7 5 11 11 N 1.31405 * 120.00286 * 179.97438 * 10 8 7 12 12 Si 1.86802 * 119.99885 * 0.02562 * 10 8 7 13 13 H 1.48496 * 109.47476 * 89.99526 * 12 10 8 14 14 H 1.48503 * 109.46928 * 209.99513 * 12 10 8 15 15 H 1.48503 * 109.46853 * 329.99250 * 12 10 8 16 16 C 1.50696 * 109.47523 * 304.99863 * 3 2 1 17 17 C 1.38264 * 119.98947 * 329.72495 * 16 3 2 18 18 C 1.38221 * 120.02198 * 179.76570 * 17 16 3 19 19 C 1.38237 * 120.01640 * 0.50815 * 18 17 16 20 20 C 1.38332 * 119.98488 * 359.74849 * 19 18 17 21 21 Cl 1.73598 * 120.01108 * 180.02562 * 20 19 18 22 22 C 1.38189 * 119.99692 * 149.99888 * 16 3 2 23 23 H 1.08996 * 109.47473 * 300.00470 * 1 2 3 24 24 H 1.09001 * 109.46943 * 59.99625 * 1 2 3 25 25 H 1.08999 * 109.47294 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.47250 * 240.00227 * 2 1 3 27 27 H 1.08998 * 109.47158 * 119.99892 * 2 1 3 28 28 H 0.96700 * 114.00311 * 180.02562 * 4 3 2 29 29 H 0.97007 * 119.99757 * 359.97438 * 7 5 3 30 30 H 0.97007 * 120.00557 * 179.97438 * 11 10 8 31 31 H 1.08001 * 119.98651 * 359.97438 * 17 16 3 32 32 H 1.08007 * 119.99395 * 180.25561 * 18 17 16 33 33 H 1.07998 * 120.00727 * 179.72340 * 19 18 17 34 34 H 1.08000 * 120.00664 * 359.97438 * 22 16 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.6620 2.0814 1.2211 5 6 3.5420 1.4443 -0.1237 6 8 4.0605 1.5669 -1.2133 7 7 4.3089 1.3096 0.9763 8 6 5.6752 1.3107 0.8637 9 1 6.1370 1.4200 -0.1066 10 6 6.4660 1.1724 1.9978 11 7 7.7756 1.1729 1.8898 12 14 5.6673 0.9841 3.6759 13 1 5.4439 -0.4564 3.9591 14 1 6.5577 1.5606 4.7153 15 1 4.3655 1.6986 3.6875 16 6 1.4392 2.1878 -1.1638 17 6 1.1185 1.5114 -2.3263 18 6 0.5629 2.1935 -3.3924 19 6 0.3373 3.5542 -3.3009 20 6 0.6629 4.2324 -2.1400 21 17 0.3793 5.9411 -2.0240 22 6 1.2142 3.5481 -1.0711 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5137 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.9526 3.0011 1.2901 29 1 3.8941 1.2118 1.8477 30 1 8.3277 1.0767 2.6816 31 1 1.2990 0.4491 -2.4000 32 1 0.3087 1.6639 -4.2988 33 1 -0.0926 4.0878 -4.1356 34 1 1.4684 4.0770 -0.1645 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282178550.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:50 Heat of formation + Delta-G solvation = -66.506011 kcal Electronic energy + Delta-G solvation = -20348.045777 eV Core-core repulsion = 17078.818964 eV Total energy + Delta-G solvation = -3269.226813 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.37367 -38.31366 -36.65956 -36.15422 -34.19521 -33.31250 -31.71267 -30.90395 -30.11292 -27.16111 -24.64204 -22.86814 -22.45999 -20.92967 -19.43717 -18.73988 -18.06399 -16.53380 -15.69632 -15.54481 -15.10390 -14.87943 -14.27668 -14.11738 -13.86384 -13.49291 -13.30866 -13.06192 -12.87074 -12.53141 -12.26283 -11.85010 -11.74341 -11.61822 -11.29050 -11.24949 -11.12526 -10.99527 -10.80252 -10.59283 -10.35559 -10.00734 -9.65417 -8.94052 -8.60630 -8.36216 -8.26784 -6.40456 -3.91883 1.23141 1.31130 2.13589 3.00431 3.06621 3.12772 3.50600 3.62158 4.04472 4.31938 4.41238 4.68886 4.80256 4.98498 5.10034 5.21253 5.31760 5.40127 5.45665 5.49401 5.69237 5.82737 5.85444 5.94318 6.04415 6.17764 6.25870 6.33609 6.44445 6.57977 6.81707 7.42284 7.61832 8.04321 8.49238 8.84338 9.32893 9.70145 10.71674 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.019993 B = 0.005331 C = 0.004927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.176915 B = 5251.336338 C = 5681.654901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.106 4.106 3 C 0.165 3.835 4 O -0.549 6.549 5 C 0.420 3.580 6 O -0.567 6.567 7 N -0.570 5.570 8 C -0.310 4.310 9 H 0.120 0.880 10 C 0.046 3.954 11 N -0.874 5.874 12 Si 0.876 3.124 13 H -0.269 1.269 14 H -0.275 1.275 15 H -0.264 1.264 16 C -0.059 4.059 17 C -0.086 4.086 18 C -0.110 4.110 19 C -0.115 4.115 20 C -0.032 4.032 21 Cl -0.078 7.078 22 C -0.100 4.100 23 H 0.062 0.938 24 H 0.058 0.942 25 H 0.054 0.946 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.378 0.622 29 H 0.377 0.623 30 H 0.275 0.725 31 H 0.131 0.869 32 H 0.131 0.869 33 H 0.130 0.870 34 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.206 2.074 -4.202 17.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.144 4.144 3 C 0.120 3.880 4 O -0.355 6.355 5 C 0.205 3.795 6 O -0.450 6.450 7 N -0.209 5.209 8 C -0.438 4.438 9 H 0.138 0.862 10 C -0.158 4.158 11 N -0.513 5.513 12 Si 0.702 3.298 13 H -0.194 1.194 14 H -0.200 1.200 15 H -0.189 1.189 16 C -0.060 4.060 17 C -0.104 4.104 18 C -0.128 4.128 19 C -0.134 4.134 20 C -0.058 4.058 21 Cl -0.049 7.049 22 C -0.119 4.119 23 H 0.082 0.918 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.102 0.898 27 H 0.097 0.903 28 H 0.227 0.773 29 H 0.211 0.789 30 H 0.086 0.914 31 H 0.149 0.851 32 H 0.149 0.851 33 H 0.148 0.852 34 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -16.908 1.715 -4.684 17.628 hybrid contribution -0.027 0.638 1.297 1.446 sum -16.934 2.353 -3.387 17.429 Atomic orbital electron populations 1.21842 0.94751 1.01453 1.02791 1.21510 0.96822 0.92345 1.03677 1.20318 0.91987 0.93532 0.82146 1.86520 1.80910 1.30493 1.37616 1.20111 0.87701 0.86143 0.85574 1.90595 1.73777 1.54268 1.26370 1.42210 1.07178 1.63866 1.07600 1.19473 0.78781 1.47768 0.97796 0.86206 1.25061 0.95287 0.97136 0.98329 1.69620 1.03279 1.47845 1.30520 0.86710 0.79688 0.79360 0.84084 1.19416 1.20018 1.18914 1.19937 0.97033 0.93077 0.95942 1.21105 0.96515 1.00710 0.92106 1.21054 0.99441 0.93524 0.98784 1.20978 1.01288 0.94637 0.96497 1.20738 1.04026 0.84670 0.96405 1.98354 1.94958 1.13289 1.98344 1.20681 0.99403 0.93656 0.98173 0.91844 0.92260 0.92707 0.89834 0.90313 0.77283 0.78857 0.91406 0.85073 0.85096 0.85233 0.85366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.35 37.16 0.35 -1.47 16 2 C -0.11 -1.56 4.63 -26.73 -0.12 -1.68 16 3 C 0.16 2.79 0.87 -92.92 -0.08 2.71 16 4 O -0.55 -8.50 11.56 -35.23 -0.41 -8.91 16 5 C 0.42 9.38 6.64 -10.98 -0.07 9.31 16 6 O -0.57 -14.88 15.80 5.55 0.09 -14.79 16 7 N -0.57 -13.48 5.00 -10.96 -0.05 -13.54 16 8 C -0.31 -8.62 10.16 -14.94 -0.15 -8.78 16 9 H 0.12 3.82 7.39 -52.48 -0.39 3.43 16 10 C 0.05 1.25 5.50 -17.47 -0.10 1.15 16 11 N -0.87 -25.10 13.96 55.50 0.77 -24.32 16 12 Si 0.88 19.25 27.74 -169.99 -4.71 14.53 16 13 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 14 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 15 H -0.26 -5.37 6.52 56.52 0.37 -5.00 16 16 C -0.06 -0.93 3.47 -104.63 -0.36 -1.29 16 17 C -0.09 -1.23 7.36 -39.58 -0.29 -1.52 16 18 C -0.11 -1.34 10.05 -39.59 -0.40 -1.74 16 19 C -0.12 -1.43 9.83 -39.55 -0.39 -1.81 16 20 C -0.03 -0.44 6.32 -39.50 -0.25 -0.69 16 21 Cl -0.08 -0.98 28.96 -51.86 -1.50 -2.48 16 22 C -0.10 -1.50 9.10 -39.55 -0.36 -1.86 16 23 H 0.06 0.79 7.82 -51.93 -0.41 0.39 16 24 H 0.06 0.69 5.71 -51.93 -0.30 0.39 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.08 1.20 6.81 -51.93 -0.35 0.85 16 27 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.38 5.08 7.32 45.56 0.33 5.41 16 29 H 0.38 8.11 5.20 -40.82 -0.21 7.90 16 30 H 0.28 7.29 8.31 -40.82 -0.34 6.95 16 31 H 0.13 1.73 6.23 -52.49 -0.33 1.40 16 32 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16 33 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 34 H 0.13 1.75 6.49 -52.49 -0.34 1.41 16 LS Contribution 300.69 15.07 4.53 4.53 Total: -1.00 -31.66 300.69 -6.36 -38.03 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -2.85 Total: 14.63 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: -2.23 Total: -7.68 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: 0.72 Total: -37.86 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.32 Total: -23.70 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -4.71 Total: 14.53 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -1.50 Total: -2.48 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.66 -6.36 -38.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282178550.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.480 kcal (2) G-P(sol) polarization free energy of solvation -31.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds