Wall clock time and date at job start Tue Mar 31 2020 05:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35744 * 116.99755 * 2 1 4 4 C 1.39284 * 120.84561 * 0.02562 * 3 2 1 5 5 C 1.37954 * 119.08995 * 179.97438 * 4 3 2 6 6 N 1.31973 * 120.82461 * 359.73933 * 5 4 3 7 7 C 1.31947 * 121.86370 * 0.53456 * 6 5 4 8 8 C 1.37994 * 120.82167 * 359.46463 * 7 6 5 9 9 C 1.50697 * 120.45838 * 180.23639 * 8 7 6 10 10 O 1.45199 * 109.47063 * 0.02562 * 9 8 7 11 11 C 1.34225 * 117.00353 * 180.02562 * 10 9 8 12 12 O 1.20831 * 119.99936 * 359.97438 * 11 10 9 13 13 C 1.50702 * 120.00315 * 179.97438 * 11 10 9 14 14 S 1.81001 * 109.47003 * 179.97438 * 13 11 10 15 15 C 1.76209 * 99.99692 * 180.02562 * 14 13 11 16 16 H 1.08000 * 119.99871 * 0.02562 * 15 14 13 17 17 C 1.38799 * 119.99960 * 180.02562 * 15 14 13 18 18 N 1.31636 * 120.00005 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99980 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47037 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47110 * 120.00221 * 19 17 15 22 22 H 1.48501 * 109.46846 * 239.99825 * 19 17 15 23 23 H 1.09008 * 109.47294 * 300.00291 * 1 2 3 24 24 H 1.08997 * 109.47193 * 60.00413 * 1 2 3 25 25 H 1.09004 * 109.47092 * 180.02562 * 1 2 3 26 26 H 1.07995 * 120.45814 * 359.95897 * 4 3 2 27 27 H 1.08004 * 119.58569 * 179.97438 * 5 4 3 28 28 H 1.08002 * 119.59362 * 179.75291 * 7 6 5 29 29 H 1.08997 * 109.47393 * 120.00590 * 9 8 7 30 30 H 1.09000 * 109.47448 * 240.00417 * 9 8 7 31 31 H 1.08993 * 109.47122 * 300.00307 * 13 11 10 32 32 H 1.09000 * 109.46650 * 59.99825 * 13 11 10 33 33 H 0.96998 * 120.00144 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.3039 2.3887 0.0005 5 6 1.9675 3.5981 0.0011 6 7 3.2864 3.6458 0.0062 7 6 4.0230 2.5511 0.0006 8 6 3.4346 1.3029 0.0001 9 6 4.2838 0.0580 -0.0010 10 8 5.6874 0.4297 -0.0007 11 6 6.5827 -0.5704 -0.0021 12 8 6.2059 -1.7185 -0.0031 13 6 8.0577 -0.2615 -0.0025 14 16 8.9980 -1.8080 -0.0037 15 6 10.6397 -1.1679 -0.0032 16 1 10.8030 -0.1003 -0.0020 17 6 11.7230 -2.0356 -0.0044 18 7 11.5239 -3.3368 -0.0054 19 14 13.4633 -1.3570 -0.0046 20 1 13.4158 0.1273 -0.0039 21 1 14.1793 -1.8304 1.2071 22 1 14.1783 -1.8284 -1.2178 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.2244 2.3567 0.0003 27 1 1.4006 4.5174 0.0011 28 1 5.0999 2.6329 0.0011 29 1 4.0644 -0.5323 0.8886 30 1 4.0638 -0.5311 -0.8913 31 1 8.3075 0.3168 -0.8920 32 1 8.3083 0.3151 0.8879 33 1 12.2809 -3.9433 -0.0059 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288614309.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:06 Heat of formation + Delta-G solvation = -87.078459 kcal Electronic energy + Delta-G solvation = -18723.394646 eV Core-core repulsion = 15455.319451 eV Total energy + Delta-G solvation = -3268.075195 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.07150 -39.95038 -38.53161 -36.29833 -32.91405 -32.47970 -31.51584 -29.79381 -28.01905 -26.79997 -25.53248 -23.29689 -22.50529 -20.89216 -18.75041 -17.99045 -17.46467 -16.78429 -16.60496 -16.19630 -16.11022 -15.22796 -14.93172 -14.84003 -14.54897 -14.24065 -14.07711 -13.59518 -13.46229 -12.70972 -12.57045 -12.22215 -12.17162 -11.95927 -11.60524 -11.09048 -11.07315 -10.80814 -10.73372 -10.05007 -9.89101 -9.75965 -9.43599 -9.11897 -9.00615 -8.35281 -6.60012 -6.27051 -3.99649 0.78006 1.01322 2.55648 2.64498 2.70921 3.20513 3.24081 3.30029 3.49104 3.50484 4.13190 4.15665 4.32999 4.52586 4.61074 4.69118 4.72629 4.97703 5.04734 5.08988 5.11792 5.25676 5.28693 5.44677 5.45374 5.63949 5.78275 5.79608 6.08337 6.29298 6.63854 6.76964 7.56368 7.75942 8.13880 8.31165 9.18716 10.80506 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.037298 B = 0.002996 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.531377 B = 9343.227194 C =10068.010766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.307 6.307 3 C 0.174 3.826 4 C -0.262 4.262 5 C 0.133 3.867 6 N -0.506 5.506 7 C 0.156 3.844 8 C -0.173 4.173 9 C 0.125 3.875 10 O -0.361 6.361 11 C 0.482 3.518 12 O -0.485 6.485 13 C -0.128 4.128 14 S -0.059 6.059 15 C -0.535 4.535 16 H 0.077 0.923 17 C 0.074 3.926 18 N -0.867 5.867 19 Si 0.922 3.078 20 H -0.270 1.270 21 H -0.279 1.279 22 H -0.279 1.279 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.105 0.895 26 H 0.141 0.859 27 H 0.158 0.842 28 H 0.175 0.825 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.042 11.164 0.002 24.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.218 6.218 3 C 0.120 3.880 4 C -0.283 4.283 5 C -0.024 4.024 6 N -0.218 5.218 7 C 0.000 4.000 8 C -0.176 4.176 9 C 0.050 3.950 10 O -0.280 6.280 11 C 0.323 3.677 12 O -0.370 6.370 13 C -0.276 4.276 14 S 0.167 5.833 15 C -0.683 4.683 16 H 0.095 0.905 17 C -0.136 4.136 18 N -0.503 5.503 19 Si 0.748 3.252 20 H -0.195 1.195 21 H -0.205 1.205 22 H -0.205 1.205 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.124 0.876 26 H 0.159 0.841 27 H 0.176 0.824 28 H 0.192 0.808 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.122 0.878 32 H 0.122 0.878 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -22.009 10.134 0.008 24.230 hybrid contribution 0.607 0.836 -0.002 1.033 sum -21.402 10.971 0.006 24.050 Atomic orbital electron populations 1.23172 0.77506 1.04639 1.01644 1.86114 1.22123 1.26022 1.87532 1.18999 0.91139 0.85044 0.92786 1.22145 1.01459 0.92944 1.11740 1.22636 0.90484 0.96962 0.92316 1.67841 1.06952 1.32025 1.14940 1.22712 1.01155 0.85539 0.90588 1.20102 0.90666 0.97237 1.09546 1.21286 0.76917 0.93141 1.03665 1.86402 1.16657 1.39802 1.85112 1.23305 0.88783 0.83237 0.72372 1.90682 1.80693 1.21734 1.43904 1.23306 0.89189 1.08500 1.06617 1.85437 1.00092 1.00861 1.96886 1.22888 0.90654 0.95529 1.59224 0.90479 1.25011 0.99591 0.94617 0.94347 1.70023 1.31830 1.01688 1.46718 0.86063 0.82122 0.79095 0.77922 1.19466 1.20522 1.20526 0.92244 0.92237 0.87629 0.84133 0.82435 0.80801 0.89634 0.89631 0.87761 0.87763 0.92129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.84 101.05 0.99 1.13 16 2 O -0.31 -3.06 10.01 -18.94 -0.19 -3.25 16 3 C 0.17 1.86 6.70 -38.82 -0.26 1.60 16 4 C -0.26 -2.21 9.11 -39.30 -0.36 -2.57 16 5 C 0.13 1.22 11.17 -17.60 -0.20 1.02 16 6 N -0.51 -6.05 10.36 -13.33 -0.14 -6.19 16 7 C 0.16 1.91 10.54 -17.59 -0.19 1.73 16 8 C -0.17 -2.12 5.91 -104.34 -0.62 -2.74 16 9 C 0.12 1.72 5.42 36.00 0.20 1.91 16 10 O -0.36 -5.63 8.72 -39.25 -0.34 -5.97 16 11 C 0.48 9.13 7.98 36.01 0.29 9.42 16 12 O -0.49 -10.61 15.61 -18.75 -0.29 -10.90 16 13 C -0.13 -2.57 6.27 36.01 0.23 -2.35 16 14 S -0.06 -1.57 20.58 -107.50 -2.21 -3.78 16 15 C -0.53 -14.95 9.50 30.94 0.29 -14.65 16 16 H 0.08 2.04 7.80 -52.49 -0.41 1.63 16 17 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 18 N -0.87 -25.74 13.22 55.49 0.73 -25.01 16 19 Si 0.92 21.15 29.55 -169.99 -5.02 16.12 16 20 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 23 H 0.06 0.25 7.71 -51.92 -0.40 -0.15 16 24 H 0.06 0.25 7.71 -51.93 -0.40 -0.15 16 25 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.14 0.75 6.47 -52.49 -0.34 0.41 16 27 H 0.16 0.93 8.06 -52.48 -0.42 0.51 16 28 H 0.17 2.06 7.00 -52.49 -0.37 1.69 16 29 H 0.09 1.19 8.13 -51.93 -0.42 0.77 16 30 H 0.09 1.19 8.13 -51.93 -0.42 0.77 16 31 H 0.10 1.93 8.14 -51.92 -0.42 1.50 16 32 H 0.10 1.93 8.14 -51.92 -0.42 1.50 16 33 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 311.06 15.07 4.69 4.69 Total: -1.00 -33.65 311.06 -6.08 -39.73 By element: Atomic # 1 Polarization: 1.68 SS G_CDS: -3.59 Total: -1.91 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: 0.28 Total: -3.53 kcal Atomic # 7 Polarization: -31.79 SS G_CDS: 0.60 Total: -31.19 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -0.82 Total: -20.13 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -33.65 -6.08 -39.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288614309.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.350 kcal (2) G-P(sol) polarization free energy of solvation -33.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds