Wall clock time and date at job start Tue Mar 31 2020 05:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35744 * 116.99755 * 2 1 4 4 C 1.39284 * 120.84561 * 0.02562 * 3 2 1 5 5 C 1.37954 * 119.08995 * 179.97438 * 4 3 2 6 6 N 1.31973 * 120.82461 * 359.73933 * 5 4 3 7 7 C 1.31947 * 121.86370 * 0.53456 * 6 5 4 8 8 C 1.37994 * 120.82167 * 359.46463 * 7 6 5 9 9 C 1.50697 * 120.45838 * 180.23639 * 8 7 6 10 10 O 1.45199 * 109.47063 * 0.02562 * 9 8 7 11 11 C 1.34225 * 117.00353 * 180.02562 * 10 9 8 12 12 O 1.20831 * 119.99936 * 359.97438 * 11 10 9 13 13 C 1.50702 * 120.00315 * 179.97438 * 11 10 9 14 14 S 1.81001 * 109.47003 * 179.97438 * 13 11 10 15 15 C 1.76209 * 99.99692 * 180.02562 * 14 13 11 16 16 H 1.08000 * 119.99871 * 0.02562 * 15 14 13 17 17 C 1.38799 * 119.99960 * 180.02562 * 15 14 13 18 18 N 1.31636 * 120.00005 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99980 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47037 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47110 * 120.00221 * 19 17 15 22 22 H 1.48501 * 109.46846 * 239.99825 * 19 17 15 23 23 H 1.09008 * 109.47294 * 300.00291 * 1 2 3 24 24 H 1.08997 * 109.47193 * 60.00413 * 1 2 3 25 25 H 1.09004 * 109.47092 * 180.02562 * 1 2 3 26 26 H 1.07995 * 120.45814 * 359.95897 * 4 3 2 27 27 H 1.08004 * 119.58569 * 179.97438 * 5 4 3 28 28 H 1.08002 * 119.59362 * 179.75291 * 7 6 5 29 29 H 1.08997 * 109.47393 * 120.00590 * 9 8 7 30 30 H 1.09000 * 109.47448 * 240.00417 * 9 8 7 31 31 H 1.08993 * 109.47122 * 300.00307 * 13 11 10 32 32 H 1.09000 * 109.46650 * 59.99825 * 13 11 10 33 33 H 0.96998 * 120.00144 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.3039 2.3887 0.0005 5 6 1.9675 3.5981 0.0011 6 7 3.2864 3.6458 0.0062 7 6 4.0230 2.5511 0.0006 8 6 3.4346 1.3029 0.0001 9 6 4.2838 0.0580 -0.0010 10 8 5.6874 0.4297 -0.0007 11 6 6.5827 -0.5704 -0.0021 12 8 6.2059 -1.7185 -0.0031 13 6 8.0577 -0.2615 -0.0025 14 16 8.9980 -1.8080 -0.0037 15 6 10.6397 -1.1679 -0.0032 16 1 10.8030 -0.1003 -0.0020 17 6 11.7230 -2.0356 -0.0044 18 7 11.5239 -3.3368 -0.0054 19 14 13.4633 -1.3570 -0.0046 20 1 13.4158 0.1273 -0.0039 21 1 14.1793 -1.8304 1.2071 22 1 14.1783 -1.8284 -1.2178 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.2244 2.3567 0.0003 27 1 1.4006 4.5174 0.0011 28 1 5.0999 2.6329 0.0011 29 1 4.0644 -0.5323 0.8886 30 1 4.0638 -0.5311 -0.8913 31 1 8.3075 0.3168 -0.8920 32 1 8.3083 0.3151 0.8879 33 1 12.2809 -3.9433 -0.0059 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000288614309.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:05 Heat of formation + Delta-G solvation = -109.028044 kcal Electronic energy + Delta-G solvation = -18724.346452 eV Core-core repulsion = 15455.319451 eV Total energy + Delta-G solvation = -3269.027001 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.94928 -41.30637 -39.25951 -37.73060 -34.60014 -33.87082 -32.26457 -31.35014 -28.54994 -27.92262 -27.57372 -24.10231 -23.41573 -22.28131 -19.95052 -19.39545 -18.83471 -17.85801 -17.76187 -17.51381 -16.89598 -16.88658 -16.14769 -15.96638 -15.70146 -15.38168 -15.22705 -14.72952 -14.51277 -14.48580 -13.66978 -13.54036 -13.17953 -13.13250 -12.91233 -12.64530 -12.55556 -12.25353 -12.05120 -11.75797 -11.64860 -11.16579 -10.58074 -10.36427 -10.17220 -9.84767 -8.72619 -8.36716 -6.16214 -0.00886 0.22918 0.97315 1.09977 1.41525 1.43131 1.57013 1.82707 2.09278 2.24527 2.70987 2.98568 3.21816 3.35388 3.60437 3.70394 3.83655 3.99755 4.04396 4.13294 4.21942 4.31537 4.36088 4.41196 4.46203 4.67037 4.72670 4.78031 4.96291 5.22403 5.42884 5.51928 6.12016 6.19632 6.63429 6.97418 7.05371 8.72790 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.037298 B = 0.002996 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.531377 B = 9343.227194 C =10068.010766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.329 6.329 3 C 0.170 3.830 4 C -0.250 4.250 5 C 0.132 3.868 6 N -0.530 5.530 7 C 0.144 3.856 8 C -0.193 4.193 9 C 0.128 3.872 10 O -0.346 6.346 11 C 0.491 3.509 12 O -0.519 6.519 13 C -0.108 4.108 14 S -0.139 6.139 15 C -0.546 4.546 16 H 0.087 0.913 17 C 0.015 3.985 18 N -0.910 5.910 19 Si 1.000 3.000 20 H -0.256 1.256 21 H -0.274 1.274 22 H -0.274 1.274 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.118 0.882 26 H 0.177 0.823 27 H 0.193 0.807 28 H 0.169 0.831 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.125 0.875 32 H 0.125 0.875 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.254 13.392 0.002 26.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.240 6.240 3 C 0.116 3.884 4 C -0.270 4.270 5 C -0.024 4.024 6 N -0.242 5.242 7 C -0.011 4.011 8 C -0.197 4.197 9 C 0.054 3.946 10 O -0.264 6.264 11 C 0.334 3.666 12 O -0.407 6.407 13 C -0.256 4.256 14 S 0.088 5.912 15 C -0.694 4.694 16 H 0.105 0.895 17 C -0.190 4.190 18 N -0.547 5.547 19 Si 0.822 3.178 20 H -0.180 1.180 21 H -0.199 1.199 22 H -0.199 1.199 23 H 0.094 0.906 24 H 0.094 0.906 25 H 0.136 0.864 26 H 0.195 0.805 27 H 0.210 0.790 28 H 0.186 0.814 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.143 0.857 32 H 0.143 0.857 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -23.253 12.385 0.008 26.345 hybrid contribution 0.734 0.206 -0.002 0.762 sum -22.519 12.592 0.006 25.800 Atomic orbital electron populations 1.23514 0.75147 1.06132 1.03184 1.86098 1.24628 1.25975 1.87316 1.19148 0.90726 0.86192 0.92370 1.22496 1.03126 0.91607 1.09798 1.23271 0.89748 0.98719 0.90646 1.67854 1.08498 1.31836 1.16006 1.22645 1.01224 0.85840 0.91381 1.20007 0.91516 0.96257 1.11884 1.21358 0.75584 0.94373 1.03281 1.86379 1.17520 1.38183 1.84271 1.23015 0.88874 0.83086 0.71634 1.90676 1.81177 1.23171 1.45637 1.23099 0.89040 1.04852 1.08589 1.85555 1.01886 1.06575 1.97176 1.23232 0.90953 0.96085 1.59090 0.89490 1.26123 1.04460 0.94818 0.93588 1.70173 1.33346 1.03294 1.47866 0.84878 0.75896 0.78954 0.78063 1.17994 1.19932 1.19943 0.90631 0.90621 0.86399 0.80525 0.78997 0.81370 0.90115 0.90108 0.85698 0.85705 0.91874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.84 113.37 1.12 1.23 16 2 O -0.33 -6.11 10.01 -90.68 -0.91 -7.01 16 3 C 0.17 3.37 6.70 22.76 0.15 3.52 16 4 C -0.25 -3.46 9.11 22.45 0.20 -3.26 16 5 C 0.13 2.05 11.17 84.60 0.95 3.00 16 6 N -0.53 -11.93 10.36 -196.08 -2.03 -13.96 16 7 C 0.14 3.49 10.54 84.62 0.89 4.38 16 8 C -0.19 -4.68 5.91 -19.68 -0.12 -4.80 16 9 C 0.13 3.59 5.42 71.23 0.39 3.97 16 10 O -0.35 -10.78 8.72 -51.37 -0.45 -11.23 16 11 C 0.49 18.73 7.98 71.24 0.57 19.30 16 12 O -0.52 -23.26 15.61 21.95 0.34 -22.92 16 13 C -0.11 -4.28 6.27 71.24 0.45 -3.83 16 14 S -0.14 -7.53 20.58 -56.49 -1.16 -8.70 16 15 C -0.55 -30.59 9.50 67.95 0.65 -29.94 16 16 H 0.09 4.53 7.80 -2.91 -0.02 4.51 16 17 C 0.02 0.85 5.49 84.86 0.47 1.31 16 18 N -0.91 -54.99 13.22 21.65 0.29 -54.70 16 19 Si 1.00 43.08 29.55 68.60 2.03 45.11 16 20 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 21 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 22 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 23 H 0.08 0.39 7.71 -2.38 -0.02 0.37 16 24 H 0.08 0.39 7.71 -2.39 -0.02 0.37 16 25 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.18 1.07 6.47 -2.91 -0.02 1.06 16 27 H 0.19 1.51 8.06 -2.91 -0.02 1.48 16 28 H 0.17 4.01 7.00 -2.91 -0.02 3.99 16 29 H 0.08 2.31 8.13 -2.39 -0.02 2.29 16 30 H 0.08 2.31 8.13 -2.39 -0.02 2.29 16 31 H 0.12 4.47 8.14 -2.40 -0.02 4.46 16 32 H 0.12 4.47 8.14 -2.40 -0.02 4.45 16 33 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -74.26 311.06 4.94 -69.31 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: 1.13 Total: 9.20 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: 5.71 Total: -5.11 kcal Atomic # 7 Polarization: -66.91 SS G_CDS: -1.75 Total: -68.66 kcal Atomic # 8 Polarization: -40.14 SS G_CDS: -1.01 Total: -41.16 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Atomic # 16 Polarization: -7.53 SS G_CDS: -1.16 Total: -8.70 kcal Total: -74.26 4.94 -69.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288614309.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.714 kcal (2) G-P(sol) polarization free energy of solvation -74.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds