Wall clock time and date at job start Tue Mar 31 2020 05:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34878 * 116.99892 * 2 1 4 4 O 1.21638 * 120.00109 * 0.02562 * 3 2 1 5 5 C 1.46431 * 120.00198 * 179.97438 * 3 2 1 6 6 C 1.44690 * 123.61123 * 359.97438 * 5 3 2 7 7 C 1.32501 * 113.17107 * 180.02562 * 6 5 3 8 8 S 1.75459 * 110.83548 * 359.97438 * 7 6 5 9 9 C 1.37189 * 123.61488 * 180.02562 * 5 3 2 10 10 N 1.38604 * 124.65873 * 359.95782 * 9 5 3 11 11 C 1.34778 * 119.99848 * 179.97438 * 10 9 5 12 12 O 1.21281 * 120.00148 * 0.02562 * 11 10 9 13 13 C 1.50703 * 119.99929 * 180.02562 * 11 10 9 14 14 C 1.53002 * 109.46820 * 180.02562 * 13 11 10 15 15 C 1.50703 * 109.46820 * 179.97438 * 14 13 11 16 16 H 1.08004 * 119.99806 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00019 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99706 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00199 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.46981 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47089 * 120.00104 * 19 17 15 22 22 H 1.48492 * 109.47136 * 240.00340 * 19 17 15 23 23 H 1.09001 * 109.47187 * 59.99966 * 1 2 3 24 24 H 1.09004 * 109.47068 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47705 * 300.00138 * 1 2 3 26 26 H 1.08004 * 123.41351 * 0.03303 * 6 5 3 27 27 H 1.08003 * 124.57925 * 180.26900 * 7 6 5 28 28 H 0.96999 * 120.00045 * 0.02562 * 10 9 5 29 29 H 1.08999 * 109.46916 * 300.00186 * 13 11 10 30 30 H 1.09000 * 109.46625 * 60.00435 * 13 11 10 31 31 H 1.08999 * 109.47471 * 299.99776 * 14 13 11 32 32 H 1.09000 * 109.47222 * 60.00732 * 14 13 11 33 33 H 0.97000 * 119.99804 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2018 0.0000 4 8 1.4018 2.2219 0.0005 5 6 3.5266 1.2785 0.0006 6 6 4.3896 0.1171 0.0017 7 6 5.6783 0.4252 0.0026 8 16 5.9040 2.1652 0.0014 9 6 4.2252 2.4592 0.0011 10 7 3.6454 3.7181 0.0004 11 6 4.4237 4.8185 0.0015 12 8 5.6313 4.7071 0.0028 13 6 3.7932 6.1873 0.0013 14 6 4.8902 7.2539 0.0021 15 6 4.2598 8.6228 0.0013 16 1 3.1843 8.7220 0.0006 17 6 5.0559 9.7484 0.0023 18 7 6.3655 9.6276 0.0036 19 14 4.2746 11.4452 0.0020 20 1 2.7957 11.3091 0.0011 21 1 4.7022 12.1873 1.2151 22 1 4.7045 12.1878 -1.2099 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 4.0207 -0.8980 0.0017 27 1 6.4812 -0.2972 -0.0007 28 1 2.6795 3.8072 -0.0002 29 1 3.1755 6.3026 -0.8893 30 1 3.1737 6.3020 0.8907 31 1 5.5083 7.1388 0.8925 32 1 5.5094 7.1390 -0.8875 33 1 6.9256 10.4195 0.0040 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291604508.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:42 Heat of formation + Delta-G solvation = -100.809102 kcal Electronic energy + Delta-G solvation = -19203.637174 eV Core-core repulsion = 15934.966574 eV Total energy + Delta-G solvation = -3268.670600 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.69820 -39.84518 -37.47744 -36.31648 -34.50290 -33.63898 -31.26161 -29.30596 -28.01316 -26.01334 -24.58563 -22.22484 -21.73154 -20.83363 -19.61568 -18.33580 -17.35457 -17.13788 -16.47824 -16.26443 -15.57044 -15.53010 -15.08504 -14.49051 -14.38751 -13.81882 -13.68906 -13.40844 -13.10920 -12.48767 -12.36989 -12.27942 -12.07604 -11.35731 -11.07210 -11.00712 -10.96578 -10.83297 -10.65017 -10.58531 -10.11378 -9.78488 -9.44908 -9.17955 -8.50411 -8.40311 -8.15207 -6.03580 -4.08341 0.66302 1.23856 1.79202 2.01164 2.68796 2.75477 3.04414 3.13116 3.29347 3.36981 3.40390 4.42208 4.70951 4.91245 4.96904 4.99524 5.06974 5.23575 5.32108 5.36851 5.62717 5.92287 6.00713 6.01401 6.12217 6.24539 6.28933 6.67505 7.30048 7.64061 7.66290 7.70862 7.95647 8.07301 8.32523 8.98787 9.55992 11.07330 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.024394 B = 0.003776 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.543220 B = 7413.433322 C = 8535.228409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.353 6.353 3 C 0.540 3.460 4 O -0.529 6.529 5 C -0.252 4.252 6 C -0.064 4.064 7 C -0.307 4.307 8 S 0.316 5.684 9 C 0.104 3.896 10 N -0.633 5.633 11 C 0.500 3.500 12 O -0.491 6.491 13 C -0.125 4.125 14 C 0.036 3.964 15 C -0.529 4.529 16 H 0.058 0.942 17 C 0.059 3.941 18 N -0.888 5.888 19 Si 0.894 3.106 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.283 1.283 23 H 0.063 0.937 24 H 0.100 0.900 25 H 0.063 0.937 26 H 0.148 0.852 27 H 0.167 0.833 28 H 0.430 0.570 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.027 0.973 32 H 0.027 0.973 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.040 -21.272 -0.013 22.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.269 6.269 3 C 0.387 3.613 4 O -0.421 6.421 5 C -0.269 4.269 6 C -0.092 4.092 7 C -0.441 4.441 8 S 0.576 5.424 9 C -0.119 4.119 10 N -0.282 5.282 11 C 0.290 3.710 12 O -0.365 6.365 13 C -0.165 4.165 14 C -0.002 4.002 15 C -0.567 4.567 16 H 0.076 0.924 17 C -0.143 4.143 18 N -0.527 5.527 19 Si 0.722 3.278 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.210 1.210 23 H 0.081 0.919 24 H 0.118 0.882 25 H 0.081 0.919 26 H 0.166 0.834 27 H 0.184 0.816 28 H 0.274 0.726 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.045 0.955 32 H 0.045 0.955 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.029 -19.945 -0.012 20.569 hybrid contribution -2.484 -0.005 0.000 2.484 sum -7.513 -19.949 -0.012 21.317 Atomic orbital electron populations 1.23253 0.76278 1.03517 1.02658 1.86578 1.23236 1.32464 1.84668 1.20190 0.87831 0.81268 0.71987 1.90721 1.66701 1.35849 1.48827 1.18830 0.90347 0.91791 1.25970 1.20763 0.91401 0.97926 0.99127 1.25960 1.00652 1.02991 1.14538 1.84614 0.94279 0.95598 1.67906 1.22421 1.01657 0.88598 0.99222 1.43958 1.13181 1.01771 1.69279 1.22416 0.87581 0.87147 0.73829 1.90593 1.14474 1.85294 1.46153 1.21961 1.02442 0.88438 1.03624 1.18968 0.91921 0.90328 0.98946 1.21203 0.93062 0.90745 1.51731 0.92374 1.25015 0.94810 0.99360 0.95112 1.69997 1.03296 1.29416 1.49979 0.86505 0.79464 0.84197 0.77637 1.19695 1.20958 1.20953 0.91870 0.88171 0.91861 0.83394 0.81570 0.72587 0.89132 0.89133 0.95478 0.95480 0.92895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.57 101.05 1.07 1.37 16 2 O -0.35 -4.06 10.29 -40.98 -0.42 -4.48 16 3 C 0.54 7.48 7.91 34.03 0.27 7.75 16 4 O -0.53 -8.15 14.24 -19.37 -0.28 -8.42 16 5 C -0.25 -3.48 6.00 -104.44 -0.63 -4.10 16 6 C -0.06 -0.72 10.13 -38.95 -0.39 -1.12 16 7 C -0.31 -3.30 11.09 28.82 0.32 -2.98 16 8 S 0.32 4.38 19.96 -107.50 -2.15 2.23 16 9 C 0.10 1.58 6.98 -14.87 -0.10 1.48 16 10 N -0.63 -10.21 5.33 -11.61 -0.06 -10.27 16 11 C 0.50 9.35 7.79 -10.98 -0.09 9.26 16 12 O -0.49 -10.34 13.40 5.56 0.07 -10.26 16 13 C -0.12 -2.45 5.64 -27.88 -0.16 -2.61 16 14 C 0.04 0.92 4.26 -27.88 -0.12 0.80 16 15 C -0.53 -14.62 9.11 -34.44 -0.31 -14.94 16 16 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 18 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16 19 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 20 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.15 1.33 8.06 -52.48 -0.42 0.91 16 27 H 0.17 1.31 8.06 -52.48 -0.42 0.89 16 28 H 0.43 6.53 6.17 -40.82 -0.25 6.28 16 29 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 30 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 31 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 32 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 307.54 15.07 4.63 4.63 Total: -1.00 -32.37 307.54 -6.31 -38.68 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -3.59 Total: 1.03 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -0.24 Total: -3.50 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: 0.67 Total: -36.24 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: -0.62 Total: -23.17 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: 4.38 SS G_CDS: -2.15 Total: 2.23 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.37 -6.31 -38.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291604508.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.127 kcal (2) G-P(sol) polarization free energy of solvation -32.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds