Wall clock time and date at job start Tue Mar 31 2020 05:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34878 * 116.99892 * 2 1 4 4 O 1.21638 * 120.00109 * 0.02562 * 3 2 1 5 5 C 1.46431 * 120.00198 * 179.97438 * 3 2 1 6 6 C 1.44690 * 123.61123 * 359.97438 * 5 3 2 7 7 C 1.32501 * 113.17107 * 180.02562 * 6 5 3 8 8 S 1.75459 * 110.83548 * 359.97438 * 7 6 5 9 9 C 1.37189 * 123.61488 * 180.02562 * 5 3 2 10 10 N 1.38604 * 124.65873 * 359.95782 * 9 5 3 11 11 C 1.34778 * 119.99848 * 179.97438 * 10 9 5 12 12 O 1.21281 * 120.00148 * 0.02562 * 11 10 9 13 13 C 1.50703 * 119.99929 * 180.02562 * 11 10 9 14 14 C 1.53002 * 109.46820 * 180.02562 * 13 11 10 15 15 C 1.50703 * 109.46820 * 179.97438 * 14 13 11 16 16 H 1.08004 * 119.99806 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00019 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99706 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00199 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.46981 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47089 * 120.00104 * 19 17 15 22 22 H 1.48492 * 109.47136 * 240.00340 * 19 17 15 23 23 H 1.09001 * 109.47187 * 59.99966 * 1 2 3 24 24 H 1.09004 * 109.47068 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47705 * 300.00138 * 1 2 3 26 26 H 1.08004 * 123.41351 * 0.03303 * 6 5 3 27 27 H 1.08003 * 124.57925 * 180.26900 * 7 6 5 28 28 H 0.96999 * 120.00045 * 0.02562 * 10 9 5 29 29 H 1.08999 * 109.46916 * 300.00186 * 13 11 10 30 30 H 1.09000 * 109.46625 * 60.00435 * 13 11 10 31 31 H 1.08999 * 109.47471 * 299.99776 * 14 13 11 32 32 H 1.09000 * 109.47222 * 60.00732 * 14 13 11 33 33 H 0.97000 * 119.99804 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2018 0.0000 4 8 1.4018 2.2219 0.0005 5 6 3.5266 1.2785 0.0006 6 6 4.3896 0.1171 0.0017 7 6 5.6783 0.4252 0.0026 8 16 5.9040 2.1652 0.0014 9 6 4.2252 2.4592 0.0011 10 7 3.6454 3.7181 0.0004 11 6 4.4237 4.8185 0.0015 12 8 5.6313 4.7071 0.0028 13 6 3.7932 6.1873 0.0013 14 6 4.8902 7.2539 0.0021 15 6 4.2598 8.6228 0.0013 16 1 3.1843 8.7220 0.0006 17 6 5.0559 9.7484 0.0023 18 7 6.3655 9.6276 0.0036 19 14 4.2746 11.4452 0.0020 20 1 2.7957 11.3091 0.0011 21 1 4.7022 12.1873 1.2151 22 1 4.7045 12.1878 -1.2099 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 4.0207 -0.8980 0.0017 27 1 6.4812 -0.2972 -0.0007 28 1 2.6795 3.8072 -0.0002 29 1 3.1755 6.3026 -0.8893 30 1 3.1737 6.3020 0.8907 31 1 5.5083 7.1388 0.8925 32 1 5.5094 7.1390 -0.8875 33 1 6.9256 10.4195 0.0040 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291604508.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:42 Heat of formation + Delta-G solvation = -121.736691 kcal Electronic energy + Delta-G solvation = -19204.544663 eV Core-core repulsion = 15934.966574 eV Total energy + Delta-G solvation = -3269.578089 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.84790 -41.10964 -38.54478 -37.33128 -35.80388 -35.61231 -33.16797 -30.38339 -28.99825 -27.69010 -25.78021 -23.92718 -22.72400 -22.18467 -20.90405 -19.49674 -18.94002 -18.13986 -17.97293 -17.44587 -16.95393 -16.85974 -16.51214 -16.12527 -15.35450 -15.10382 -15.02860 -14.35183 -14.34393 -14.25103 -13.73495 -13.37072 -13.31720 -12.90069 -12.87601 -12.50497 -12.18754 -12.05092 -11.98382 -11.80693 -11.74310 -11.63103 -11.28887 -10.84574 -10.58324 -9.57036 -9.25642 -8.19938 -6.33136 -0.47684 0.17683 0.86377 1.03577 1.31528 1.42605 1.43088 1.56350 1.76662 1.84969 2.05361 2.42232 3.13898 3.71274 3.76674 3.94358 4.24650 4.33418 4.36176 4.37854 4.40667 4.72199 4.74114 4.92885 4.94187 5.12398 5.22446 5.35284 5.47552 5.57600 5.81592 6.00384 6.14220 6.62204 6.72936 6.86111 7.36858 8.92589 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.024394 B = 0.003776 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.543220 B = 7413.433322 C = 8535.228409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.350 6.350 3 C 0.537 3.463 4 O -0.549 6.549 5 C -0.243 4.243 6 C -0.068 4.068 7 C -0.276 4.276 8 S 0.277 5.723 9 C 0.068 3.932 10 N -0.625 5.625 11 C 0.505 3.495 12 O -0.525 6.525 13 C -0.115 4.115 14 C 0.043 3.957 15 C -0.545 4.545 16 H 0.074 0.926 17 C -0.003 4.003 18 N -0.933 5.933 19 Si 0.971 3.029 20 H -0.256 1.256 21 H -0.280 1.280 22 H -0.280 1.280 23 H 0.062 0.938 24 H 0.136 0.864 25 H 0.062 0.938 26 H 0.179 0.821 27 H 0.203 0.797 28 H 0.434 0.566 29 H 0.110 0.890 30 H 0.110 0.890 31 H -0.008 1.008 32 H -0.008 1.008 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.883 -22.993 -0.015 24.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.266 6.266 3 C 0.385 3.615 4 O -0.443 6.443 5 C -0.262 4.262 6 C -0.095 4.095 7 C -0.411 4.411 8 S 0.538 5.462 9 C -0.152 4.152 10 N -0.274 5.274 11 C 0.295 3.705 12 O -0.401 6.401 13 C -0.154 4.154 14 C 0.005 3.995 15 C -0.582 4.582 16 H 0.092 0.908 17 C -0.201 4.201 18 N -0.573 5.573 19 Si 0.795 3.205 20 H -0.180 1.180 21 H -0.206 1.206 22 H -0.206 1.206 23 H 0.080 0.920 24 H 0.154 0.846 25 H 0.080 0.920 26 H 0.197 0.803 27 H 0.220 0.780 28 H 0.279 0.721 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.011 0.989 32 H 0.011 0.989 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.903 -21.718 -0.014 22.789 hybrid contribution -1.953 0.314 0.001 1.978 sum -8.856 -21.404 -0.014 23.164 Atomic orbital electron populations 1.23595 0.74301 1.05907 1.02600 1.86565 1.25104 1.30921 1.83982 1.20283 0.87913 0.81700 0.71622 1.90706 1.67168 1.36722 1.49705 1.19206 0.90915 0.92155 1.23914 1.21064 0.91037 0.98384 0.99013 1.26234 1.01576 1.00981 1.12298 1.84744 0.94502 0.98838 1.68109 1.22601 1.02188 0.88439 1.01994 1.43547 1.12920 1.01739 1.69192 1.22026 0.87166 0.87520 0.73834 1.90595 1.15651 1.85959 1.47942 1.21700 1.00614 0.87566 1.05566 1.18724 0.92880 0.92278 0.95612 1.21688 0.93934 0.91600 1.51015 0.90829 1.26054 0.95256 1.04159 0.94599 1.70155 1.05107 1.30773 1.51272 0.85310 0.79192 0.78379 0.77597 1.17953 1.20596 1.20584 0.91961 0.84587 0.91955 0.80337 0.78008 0.72142 0.87154 0.87152 0.98932 0.98933 0.92770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.57 113.37 1.20 1.60 16 2 O -0.35 -7.15 10.29 -57.92 -0.60 -7.74 16 3 C 0.54 14.02 7.91 69.96 0.55 14.58 16 4 O -0.55 -16.40 14.24 19.38 0.28 -16.13 16 5 C -0.24 -6.34 6.00 -19.74 -0.12 -6.46 16 6 C -0.07 -1.33 10.13 22.78 0.23 -1.10 16 7 C -0.28 -5.18 11.09 66.68 0.74 -4.44 16 8 S 0.28 7.64 19.96 -56.49 -1.13 6.52 16 9 C 0.07 2.07 6.98 83.37 0.58 2.65 16 10 N -0.63 -20.33 5.33 -309.04 -1.65 -21.98 16 11 C 0.50 19.43 7.79 87.66 0.68 20.11 16 12 O -0.53 -23.24 13.40 -3.03 -0.04 -23.28 16 13 C -0.12 -4.58 5.64 29.85 0.17 -4.41 16 14 C 0.04 2.29 4.26 29.85 0.13 2.42 16 15 C -0.54 -30.44 9.11 25.60 0.23 -30.21 16 16 H 0.07 3.79 7.74 -2.91 -0.02 3.77 16 17 C 0.00 -0.16 5.46 84.65 0.46 0.31 16 18 N -0.93 -57.81 13.29 21.45 0.28 -57.53 16 19 Si 0.97 43.91 29.54 68.60 2.03 45.94 16 20 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 21 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 22 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 23 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.14 0.88 8.14 -2.38 -0.02 0.87 16 25 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.18 2.42 8.06 -2.91 -0.02 2.40 16 27 H 0.20 2.32 8.06 -2.91 -0.02 2.30 16 28 H 0.43 13.13 6.17 -92.71 -0.57 12.55 16 29 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 30 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 31 H -0.01 -0.46 8.10 -2.39 -0.02 -0.48 16 32 H -0.01 -0.46 8.10 -2.39 -0.02 -0.48 16 33 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -72.32 307.54 4.61 -67.71 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: 0.57 Total: 11.44 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: 4.86 Total: -4.95 kcal Atomic # 7 Polarization: -78.15 SS G_CDS: -1.36 Total: -79.51 kcal Atomic # 8 Polarization: -46.79 SS G_CDS: -0.36 Total: -47.15 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 16 Polarization: 7.64 SS G_CDS: -1.13 Total: 6.52 kcal Total: -72.32 4.61 -67.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291604508.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.025 kcal (2) G-P(sol) polarization free energy of solvation -72.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds