Wall clock time and date at job start Tue Mar 31 2020 05:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86809 * 119.99835 * 2 1 4 4 H 1.48493 * 109.47037 * 239.99493 * 3 2 1 5 5 H 1.48501 * 109.46667 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47133 * 119.99441 * 3 2 1 7 7 C 1.37876 * 120.00513 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00510 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99720 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47208 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.47198 * 180.02562 * 10 9 7 12 12 C 1.34777 * 119.99665 * 180.27868 * 11 10 9 13 13 O 1.21283 * 119.99990 * 359.71991 * 12 11 10 14 14 C 1.50698 * 119.99538 * 179.72653 * 12 11 10 15 15 H 1.08996 * 109.47299 * 304.99132 * 14 12 11 16 16 O 1.42904 * 109.46886 * 184.99758 * 14 12 11 17 17 C 1.50695 * 109.47676 * 64.99818 * 14 12 11 18 18 C 1.38243 * 119.99061 * 84.72252 * 17 14 12 19 19 C 1.38207 * 120.01483 * 179.73106 * 18 17 14 20 20 C 1.38356 * 119.98619 * 0.54394 * 19 18 17 21 21 Cl 1.73602 * 120.01072 * 179.70234 * 20 19 18 22 22 C 1.38350 * 119.97213 * 359.73023 * 20 19 18 23 23 C 1.38207 * 119.98785 * 359.97438 * 22 20 19 24 24 H 0.96999 * 120.00239 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47322 * 60.00361 * 9 7 2 26 26 H 1.09006 * 109.46960 * 299.99918 * 9 7 2 27 27 H 1.09009 * 109.46730 * 59.99906 * 10 9 7 28 28 H 1.08998 * 109.46846 * 300.00451 * 10 9 7 29 29 H 0.97001 * 119.99790 * 359.97438 * 11 10 9 30 30 H 0.96699 * 114.00286 * 299.99762 * 16 14 12 31 31 H 1.08003 * 119.98543 * 0.02562 * 18 17 14 32 32 H 1.07996 * 120.00785 * 180.27395 * 19 18 17 33 33 H 1.07997 * 120.00272 * 179.97438 * 22 20 19 34 34 H 1.08000 * 119.99331 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 7 1.5130 -4.9308 -0.0001 12 6 2.1870 -6.0979 0.0055 13 8 3.3998 -6.0978 0.0059 14 6 1.4335 -7.4030 0.0111 15 1 0.7412 -7.4192 0.8527 16 8 2.3577 -8.4860 0.1337 17 6 0.6628 -7.5437 -1.2762 18 6 1.2839 -8.0533 -2.4013 19 6 0.5760 -8.1878 -3.5806 20 6 -0.7514 -7.8018 -3.6382 21 17 -1.6390 -7.9633 -5.1214 22 6 -1.3708 -7.2867 -2.5135 23 6 -0.6636 -7.1583 -1.3331 24 1 -0.4850 0.8400 -0.0004 25 1 0.6249 -2.5571 -0.8897 26 1 0.6242 -2.5567 0.8904 27 1 2.8722 -3.6042 0.8906 28 1 2.8722 -3.6042 -0.8894 29 1 0.5430 -4.9308 0.0000 30 1 3.0053 -8.5336 -0.5828 31 1 2.3212 -8.3508 -2.3572 32 1 1.0601 -8.5900 -4.4583 33 1 -2.4068 -6.9848 -2.5581 34 1 -1.1472 -6.7566 -0.4549 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291647992.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:26 Heat of formation + Delta-G solvation = -83.611450 kcal Electronic energy + Delta-G solvation = -19222.865929 eV Core-core repulsion = 15952.897368 eV Total energy + Delta-G solvation = -3269.968561 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.46672 -38.93717 -36.93936 -36.30598 -34.90242 -32.99529 -31.80157 -31.28952 -29.73334 -27.08459 -24.58967 -23.17299 -22.23540 -21.08892 -20.36048 -18.19570 -17.58613 -16.65776 -16.34320 -16.22003 -15.27909 -14.86853 -14.83375 -14.52164 -13.97435 -13.81896 -13.77440 -13.64090 -13.03337 -12.67559 -12.33754 -12.03670 -11.79954 -11.72035 -11.27126 -11.09638 -11.06443 -10.96794 -10.69874 -10.39318 -9.88559 -9.54700 -9.33860 -9.30559 -8.77507 -8.63662 -8.42298 -6.12975 -4.16218 0.76172 0.99674 1.86848 2.72811 3.22824 3.28880 3.32933 3.35609 3.50831 4.20565 4.32985 4.39189 4.42728 4.57938 4.90156 4.93707 5.00483 5.24181 5.28206 5.34189 5.61104 5.84942 5.92732 6.11409 6.23839 6.26524 6.44101 6.65016 6.76863 7.25692 7.45220 7.55344 7.82714 7.85835 8.21583 8.44095 8.89171 9.48933 10.98500 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.015518 B = 0.003962 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.974317 B = 7065.122723 C = 8377.192582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.061 3.939 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.524 4.524 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.120 3.880 11 N -0.713 5.713 12 C 0.482 3.518 13 O -0.540 6.540 14 C 0.133 3.867 15 H 0.134 0.866 16 O -0.531 6.531 17 C -0.111 4.111 18 C -0.093 4.093 19 C -0.105 4.105 20 C -0.031 4.031 21 Cl -0.071 7.071 22 C -0.103 4.103 23 C -0.093 4.093 24 H 0.263 0.737 25 H 0.022 0.978 26 H 0.023 0.977 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.397 0.603 30 H 0.382 0.618 31 H 0.132 0.868 32 H 0.136 0.864 33 H 0.138 0.862 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.911 -18.028 -5.717 19.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.141 4.141 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.563 4.563 8 H 0.077 0.923 9 C -0.024 4.024 10 C -0.002 4.002 11 N -0.363 5.363 12 C 0.266 3.734 13 O -0.418 6.418 14 C 0.070 3.930 15 H 0.151 0.849 16 O -0.336 6.336 17 C -0.112 4.112 18 C -0.111 4.111 19 C -0.124 4.124 20 C -0.058 4.058 21 Cl -0.042 7.042 22 C -0.122 4.122 23 C -0.111 4.111 24 H 0.073 0.927 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.231 0.769 30 H 0.232 0.768 31 H 0.150 0.850 32 H 0.153 0.847 33 H 0.156 0.844 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -3.595 -18.024 -5.315 19.132 hybrid contribution 0.105 1.163 -0.698 1.361 sum -3.489 -16.860 -6.013 18.237 Atomic orbital electron populations 1.69937 1.06089 1.27046 1.50164 1.24982 0.94886 0.99389 0.94880 0.86573 0.79541 0.82637 0.78806 1.20102 1.21196 1.20078 1.20999 0.93207 0.90368 1.51682 0.92304 1.19318 0.94157 0.91065 0.97865 1.21785 0.96140 0.81353 1.00918 1.46335 1.10588 1.06571 1.72838 1.21171 0.88734 0.86153 0.77381 1.90703 1.13571 1.87324 1.50159 1.20746 0.90356 0.85818 0.96098 0.84876 1.86609 1.46644 1.47454 1.52891 1.20384 0.94969 1.00146 0.95674 1.20841 1.00053 0.98612 0.91624 1.21002 0.92396 1.00243 0.98772 1.20991 0.93256 1.03326 0.88222 1.98378 1.75515 1.96415 1.33870 1.21067 1.00910 0.98968 0.91260 1.20987 0.93159 0.98770 0.98225 0.92745 0.95920 0.95901 0.92342 0.92461 0.76882 0.76850 0.85009 0.84652 0.84380 0.84334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.72 13.29 55.43 0.74 -24.98 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 21.15 29.54 -169.99 -5.02 16.12 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.52 -14.32 9.11 -34.44 -0.31 -14.63 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 10 C 0.12 2.48 5.61 -4.04 -0.02 2.46 16 11 N -0.71 -11.74 5.51 -60.29 -0.33 -12.08 16 12 C 0.48 7.66 7.15 -10.99 -0.08 7.58 16 13 O -0.54 -10.58 16.32 -14.30 -0.23 -10.82 16 14 C 0.13 1.56 3.62 -29.04 -0.11 1.46 16 15 H 0.13 1.29 8.05 -51.93 -0.42 0.88 16 16 O -0.53 -6.47 12.79 -55.09 -0.70 -7.18 16 17 C -0.11 -1.18 4.95 -104.62 -0.52 -1.70 16 18 C -0.09 -0.95 9.33 -39.59 -0.37 -1.32 16 19 C -0.11 -1.04 9.83 -39.55 -0.39 -1.43 16 20 C -0.03 -0.32 6.32 -39.50 -0.25 -0.57 16 21 Cl -0.07 -0.70 28.96 -51.86 -1.50 -2.20 16 22 C -0.10 -1.01 9.83 -39.55 -0.39 -1.40 16 23 C -0.09 -0.90 9.51 -39.59 -0.38 -1.28 16 24 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 25 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 1.26 8.14 -51.92 -0.42 0.84 16 28 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 29 H 0.40 5.60 8.31 -40.82 -0.34 5.26 16 30 H 0.38 3.83 7.14 45.56 0.33 4.16 16 31 H 0.13 1.12 6.62 -52.48 -0.35 0.77 16 32 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 33 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 34 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 316.46 15.07 4.77 4.77 Total: -1.00 -32.10 316.46 -8.62 -40.72 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -3.28 Total: 4.72 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: -3.05 Total: -9.08 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: 0.40 Total: -37.06 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: -0.94 Total: -18.00 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.50 Total: -2.20 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.10 -8.62 -40.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291647992.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.895 kcal (2) G-P(sol) polarization free energy of solvation -32.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds