Wall clock time and date at job start Tue Mar 31 2020 05:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81004 * 1 3 3 C 1.76193 * 99.99979 * 2 1 4 4 C 1.36529 * 125.60951 * 180.02562 * 3 2 1 5 5 C 1.39657 * 107.18612 * 179.71406 * 4 3 2 6 6 C 1.37996 * 106.75253 * 0.26043 * 5 4 3 7 7 C 1.41624 * 126.01694 * 180.02562 * 6 5 4 8 8 O 1.21811 * 119.99503 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00671 * 179.97438 * 7 6 5 10 10 C 1.47070 * 136.04932 * 359.63686 * 9 7 6 11 11 C 1.53240 * 88.07725 * 207.19466 * 10 9 7 12 12 O 1.42903 * 114.19240 * 87.73245 * 11 10 9 13 13 C 1.50700 * 114.32809 * 220.46836 * 11 10 9 14 14 H 1.07995 * 119.99920 * 93.76703 * 13 11 10 15 15 C 1.37879 * 119.99942 * 273.76371 * 13 11 10 16 16 N 1.31511 * 120.00339 * 0.02562 * 15 13 11 17 17 Si 1.86805 * 119.99770 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.47167 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46668 * 120.00111 * 17 15 13 20 20 H 1.48493 * 109.47056 * 240.00316 * 17 15 13 21 21 C 1.47063 * 136.06263 * 180.02562 * 9 7 6 22 22 O 1.34150 * 125.62133 * 0.16926 * 3 2 1 23 23 H 1.09004 * 109.46863 * 299.99942 * 1 2 3 24 24 H 1.09005 * 109.47163 * 59.99878 * 1 2 3 25 25 H 1.08999 * 109.47505 * 180.02562 * 1 2 3 26 26 H 1.08002 * 126.40933 * 359.97438 * 4 3 2 27 27 H 1.08001 * 126.61923 * 180.26720 * 5 4 3 28 28 H 1.08991 * 113.47080 * 321.93372 * 10 9 7 29 29 H 1.09002 * 113.46495 * 92.37951 * 10 9 7 30 30 H 0.96706 * 114.00402 * 86.30163 * 12 11 10 31 31 H 0.97003 * 120.00006 * 180.02562 * 16 15 13 32 32 H 1.09004 * 113.46769 * 267.63219 * 21 9 7 33 33 H 1.09004 * 113.46629 * 38.00861 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 6 3.3471 2.3253 -0.0005 5 6 3.1426 3.7068 -0.0070 6 6 1.7772 3.9067 -0.0042 7 6 1.1191 5.1608 -0.0092 8 8 1.7703 6.1902 -0.0173 9 7 -0.2275 5.2153 -0.0062 10 6 -1.3268 4.2383 -0.0048 11 6 -2.1949 5.2913 -0.7018 12 8 -2.0941 5.2831 -2.1272 13 6 -3.6165 5.3513 -0.2055 14 1 -3.8876 6.0485 0.5734 15 6 -4.5712 4.5160 -0.7459 16 7 -4.2410 3.6666 -1.6941 17 14 -6.3333 4.5899 -0.1301 18 1 -6.4434 5.6212 0.9327 19 1 -7.2364 4.9409 -1.2554 20 1 -6.7207 3.2668 0.4215 21 6 -1.2444 6.2777 -0.0099 22 8 1.1777 2.6940 0.0032 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 4.3009 1.8186 -0.0006 27 1 3.9057 4.4710 -0.0131 28 1 -1.1297 3.3622 -0.6225 29 1 -1.6766 3.9799 0.9947 30 1 -2.6942 4.6607 -2.5604 31 1 -4.9128 3.0792 -2.0745 32 1 -1.5719 6.5685 0.9883 33 1 -0.9768 7.1325 -0.6312 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336410777.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:05 Heat of formation + Delta-G solvation = -42.110955 kcal Electronic energy + Delta-G solvation = -20231.967137 eV Core-core repulsion = 16965.841879 eV Total energy + Delta-G solvation = -3266.125258 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.72286 -41.28474 -39.23952 -36.00218 -34.28670 -34.16043 -31.97448 -30.20047 -29.80282 -27.38357 -26.94133 -24.45945 -22.96860 -21.83265 -20.58006 -19.60937 -19.11153 -18.21537 -17.71300 -17.38585 -16.93241 -16.26348 -16.04391 -15.94892 -15.12626 -14.66739 -14.61824 -14.53968 -14.49749 -14.14388 -14.03889 -13.78779 -13.45567 -13.16098 -12.82636 -12.79774 -12.25843 -12.20089 -12.07282 -11.66871 -11.34033 -11.15844 -10.72445 -10.69654 -10.33400 -9.74005 -8.49697 -8.30275 -6.47821 -0.31519 0.03055 0.79082 1.12361 1.44926 1.49762 1.60258 1.78975 2.07296 2.24689 2.39227 2.91131 3.49487 3.71770 3.75874 4.06419 4.13110 4.18486 4.26127 4.38519 4.45473 4.56754 4.64721 4.70696 4.79619 4.85483 4.88039 5.15443 5.20071 5.57702 5.69980 5.85907 6.57761 6.62301 6.89526 7.25892 7.43578 8.76467 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.017703 B = 0.005698 C = 0.004543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.312735 B = 4912.904334 C = 6161.774749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 S 0.025 5.975 3 C -0.018 4.018 4 C -0.188 4.188 5 C -0.088 4.088 6 C -0.109 4.109 7 C 0.612 3.388 8 O -0.577 6.577 9 N -0.632 5.632 10 C 0.094 3.906 11 C 0.221 3.779 12 O -0.586 6.586 13 C -0.551 4.551 14 H 0.078 0.922 15 C 0.033 3.967 16 N -0.917 5.917 17 Si 0.973 3.027 18 H -0.266 1.266 19 H -0.281 1.281 20 H -0.276 1.276 21 C 0.109 3.891 22 O -0.161 6.161 23 H 0.086 0.914 24 H 0.079 0.921 25 H 0.141 0.859 26 H 0.197 0.803 27 H 0.179 0.821 28 H 0.056 0.944 29 H 0.091 0.909 30 H 0.390 0.610 31 H 0.277 0.723 32 H 0.110 0.890 33 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.143 -9.871 4.351 13.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.329 4.329 2 S 0.263 5.737 3 C -0.182 4.182 4 C -0.214 4.214 5 C -0.110 4.110 6 C -0.165 4.165 7 C 0.405 3.595 8 O -0.462 6.462 9 N -0.364 5.364 10 C -0.029 4.029 11 C 0.180 3.820 12 O -0.399 6.399 13 C -0.589 4.589 14 H 0.096 0.904 15 C -0.168 4.168 16 N -0.558 5.558 17 Si 0.798 3.202 18 H -0.190 1.190 19 H -0.207 1.207 20 H -0.201 1.201 21 C -0.013 4.013 22 O -0.058 6.058 23 H 0.106 0.894 24 H 0.098 0.902 25 H 0.159 0.841 26 H 0.214 0.786 27 H 0.197 0.803 28 H 0.074 0.926 29 H 0.109 0.891 30 H 0.246 0.754 31 H 0.087 0.913 32 H 0.128 0.872 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 9.397 -10.122 4.343 14.479 hybrid contribution -2.027 0.766 -0.073 2.169 sum 7.370 -9.356 4.270 12.652 Atomic orbital electron populations 1.23751 0.93463 1.09087 1.06617 1.85595 1.07988 0.88429 1.91690 1.25622 0.90659 0.95396 1.06496 1.21850 0.98131 0.92346 1.09103 1.22424 0.93375 0.97710 0.97506 1.21120 0.93477 0.83450 1.18425 1.15179 0.80164 0.86783 0.77397 1.90807 1.65192 1.34448 1.55709 1.49723 1.03208 1.14029 1.69418 1.23973 0.83112 0.94650 1.01175 1.19768 0.92185 0.90557 0.79538 1.86039 1.66877 1.67197 1.19792 1.21661 0.93117 1.21998 1.22075 0.90425 1.25793 1.03350 0.93373 0.94280 1.69335 1.36295 1.23018 1.27161 0.85275 0.78424 0.78260 0.78288 1.18984 1.20732 1.20130 1.23416 0.84242 0.92573 1.01092 1.84382 1.35879 1.14118 1.71381 0.89449 0.90195 0.84100 0.78622 0.80316 0.92593 0.89073 0.75444 0.91282 0.87203 0.92041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.26 10.08 113.37 1.14 -2.12 16 2 S 0.02 0.52 22.90 -56.49 -1.29 -0.78 16 3 C -0.02 -0.50 7.28 67.42 0.49 -0.01 16 4 C -0.19 -4.66 10.82 22.21 0.24 -4.42 16 5 C -0.09 -2.66 10.57 22.56 0.24 -2.43 16 6 C -0.11 -4.13 6.93 23.05 0.16 -3.97 16 7 C 0.61 27.16 7.84 85.08 0.67 27.83 16 8 O -0.58 -27.72 17.56 -4.70 -0.08 -27.80 16 9 N -0.63 -28.42 3.69 -869.96 -3.21 -31.63 16 10 C 0.09 4.17 7.13 83.10 0.59 4.76 16 11 C 0.22 10.74 1.57 -11.30 -0.02 10.73 16 12 O -0.59 -31.17 13.53 -148.98 -2.02 -33.19 16 13 C -0.55 -27.09 8.69 25.60 0.22 -26.87 16 14 H 0.08 3.67 7.81 -2.91 -0.02 3.65 16 15 C 0.03 1.57 5.39 84.66 0.46 2.03 16 16 N -0.92 -45.56 11.01 21.45 0.24 -45.32 16 17 Si 0.97 38.42 29.54 68.60 2.03 40.45 16 18 H -0.27 -10.26 7.11 99.48 0.71 -9.56 16 19 H -0.28 -11.14 7.11 99.48 0.71 -10.43 16 20 H -0.28 -10.61 7.11 99.48 0.71 -9.90 16 21 C 0.11 4.85 8.03 83.17 0.67 5.51 16 22 O -0.16 -5.67 8.54 -10.94 -0.09 -5.76 16 23 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 24 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.14 1.96 8.14 -2.40 -0.02 1.94 16 26 H 0.20 3.29 8.06 -2.91 -0.02 3.27 16 27 H 0.18 4.71 8.06 -2.91 -0.02 4.69 16 28 H 0.06 2.57 7.45 -2.39 -0.02 2.55 16 29 H 0.09 3.82 8.10 -2.39 -0.02 3.80 16 30 H 0.39 20.87 6.33 -74.05 -0.47 20.41 16 31 H 0.28 12.93 8.31 -92.71 -0.77 12.16 16 32 H 0.11 4.34 8.10 -2.38 -0.02 4.33 16 33 H 0.06 2.80 8.14 -2.38 -0.02 2.78 16 Total: -1.00 -60.61 307.23 1.10 -59.51 By element: Atomic # 1 Polarization: 32.81 SS G_CDS: 0.68 Total: 33.48 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: 4.86 Total: 11.04 kcal Atomic # 7 Polarization: -73.97 SS G_CDS: -2.98 Total: -76.95 kcal Atomic # 8 Polarization: -64.56 SS G_CDS: -2.19 Total: -66.75 kcal Atomic # 14 Polarization: 38.42 SS G_CDS: 2.03 Total: 40.45 kcal Atomic # 16 Polarization: 0.52 SS G_CDS: -1.29 Total: -0.78 kcal Total: -60.61 1.10 -59.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336410777.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.396 kcal (2) G-P(sol) polarization free energy of solvation -60.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds