Wall clock time and date at job start Tue Mar 31 2020 05:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35982 * 117.00253 * 2 1 4 4 C 1.38726 * 119.97057 * 0.02562 * 3 2 1 5 5 C 1.38231 * 120.12071 * 179.76795 * 4 3 2 6 6 C 1.38521 * 120.06637 * 0.46492 * 5 4 3 7 7 O 1.36061 * 120.02516 * 179.79078 * 6 5 4 8 8 C 1.39276 * 119.94614 * 359.51216 * 6 5 4 9 9 N 1.40114 * 120.05771 * 180.27559 * 8 6 5 10 10 C 1.34773 * 119.99669 * 204.79181 * 9 8 6 11 11 O 1.21292 * 120.00320 * 5.53490 * 10 9 8 12 12 C 1.50702 * 119.99896 * 185.53091 * 10 9 8 13 13 S 1.80999 * 109.47318 * 179.97438 * 12 10 9 14 14 C 1.76197 * 100.00029 * 180.02562 * 13 12 10 15 15 H 1.07998 * 120.00063 * 0.02562 * 14 13 12 16 16 C 1.38800 * 119.99857 * 180.02562 * 14 13 12 17 17 N 1.31630 * 120.00161 * 179.97438 * 16 14 13 18 18 Si 1.86798 * 120.00150 * 0.02562 * 16 14 13 19 19 H 1.48494 * 109.47347 * 89.99652 * 18 16 14 20 20 H 1.48499 * 109.47341 * 210.00167 * 18 16 14 21 21 H 1.48506 * 109.47070 * 329.99967 * 18 16 14 22 22 C 1.38620 * 119.97424 * 180.02562 * 3 2 1 23 23 H 1.08999 * 109.47012 * 300.00473 * 1 2 3 24 24 H 1.08998 * 109.46791 * 60.00091 * 1 2 3 25 25 H 1.08995 * 109.47088 * 179.97438 * 1 2 3 26 26 H 1.07996 * 119.93522 * 0.02562 * 4 3 2 27 27 H 1.08000 * 119.96742 * 180.22983 * 5 4 3 28 28 H 0.96701 * 113.99799 * 269.72357 * 7 6 5 29 29 H 0.97001 * 119.99870 * 24.79410 * 9 8 6 30 30 H 1.08999 * 109.47390 * 300.00393 * 12 10 9 31 31 H 1.09009 * 109.46760 * 60.00265 * 12 10 9 32 32 H 0.97000 * 120.00547 * 180.02562 * 17 16 14 33 33 H 1.08000 * 120.03761 * 0.02562 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2903 2.3747 0.0005 5 6 1.9147 3.6079 0.0054 6 6 3.2977 3.6856 0.0000 7 8 3.9114 4.9000 0.0005 8 6 4.0595 2.5197 -0.0001 9 7 5.4586 2.5956 0.0003 10 6 6.1889 1.5741 -0.4891 11 8 5.6370 0.6340 -1.0209 12 6 7.6915 1.5999 -0.3758 13 16 8.3785 0.0996 -1.1195 14 6 10.0967 0.3857 -0.8540 15 1 10.4236 1.2872 -0.3573 16 6 11.0301 -0.5476 -1.2834 17 7 12.3138 -0.3336 -1.0856 18 14 10.4648 -2.1066 -2.1432 19 1 10.3979 -1.8679 -3.6073 20 1 11.4268 -3.2027 -1.8637 21 1 9.1200 -2.4884 -1.6420 22 6 3.4307 1.2834 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 0.2119 2.3164 0.0014 27 1 1.3236 4.5118 0.0095 28 1 4.0890 5.2512 -0.8828 29 1 5.9015 3.3833 0.3529 30 1 8.0802 2.4749 -0.8968 31 1 7.9758 1.6469 0.6755 32 1 12.9661 -0.9856 -1.3859 33 1 4.0191 0.3778 -0.0014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340317657.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:55 Heat of formation + Delta-G solvation = -83.404502 kcal Electronic energy + Delta-G solvation = -19107.309569 eV Core-core repulsion = 15839.393689 eV Total energy + Delta-G solvation = -3267.915880 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.89234 -39.47437 -38.41579 -35.96424 -34.51261 -32.47529 -31.00582 -29.75818 -28.12196 -27.24202 -25.65416 -23.41690 -22.19057 -20.50606 -18.93814 -18.29678 -17.87409 -16.92476 -16.46833 -16.03819 -15.83244 -15.50109 -15.20336 -15.01153 -14.27991 -14.12277 -13.75352 -13.48035 -12.95909 -12.85079 -12.82221 -12.69153 -12.25748 -11.62324 -11.37258 -11.31470 -11.03796 -10.93074 -10.68399 -10.36027 -9.88745 -9.55588 -9.03850 -8.57297 -8.47774 -8.01121 -6.97800 -6.32244 -4.05276 1.05163 1.17736 2.57812 2.71970 3.01260 3.27034 3.31395 3.47934 3.50704 3.56721 4.08163 4.29776 4.58296 4.62526 4.82987 4.89719 4.92160 5.06779 5.09669 5.11533 5.24714 5.36333 5.64348 5.72885 5.84300 5.91271 6.02373 6.17325 6.25612 6.63566 7.19861 7.35840 7.48399 7.90634 8.20245 8.38383 9.13492 10.76918 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.025743 B = 0.003852 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.424331 B = 7266.995013 C = 8250.381191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.312 6.312 3 C 0.144 3.856 4 C -0.220 4.220 5 C -0.082 4.082 6 C 0.029 3.971 7 O -0.493 6.493 8 C 0.179 3.821 9 N -0.669 5.669 10 C 0.529 3.471 11 O -0.492 6.492 12 C -0.125 4.125 13 S -0.137 6.137 14 C -0.523 4.523 15 H 0.089 0.911 16 C 0.097 3.903 17 N -0.879 5.879 18 Si 0.856 3.144 19 H -0.267 1.267 20 H -0.273 1.273 21 H -0.235 1.235 22 C -0.156 4.156 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.100 0.900 26 H 0.131 0.869 27 H 0.133 0.867 28 H 0.384 0.616 29 H 0.418 0.582 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.271 0.729 33 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.854 8.168 2.456 24.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.225 6.225 3 C 0.097 3.903 4 C -0.240 4.240 5 C -0.102 4.102 6 C -0.019 4.019 7 O -0.302 6.302 8 C 0.082 3.918 9 N -0.315 5.315 10 C 0.317 3.683 11 O -0.364 6.364 12 C -0.276 4.276 13 S 0.089 5.911 14 C -0.671 4.671 15 H 0.107 0.893 16 C -0.112 4.112 17 N -0.515 5.515 18 Si 0.681 3.319 19 H -0.192 1.192 20 H -0.199 1.199 21 H -0.159 1.159 22 C -0.177 4.177 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.118 0.882 26 H 0.148 0.852 27 H 0.151 0.849 28 H 0.239 0.761 29 H 0.254 0.746 30 H 0.120 0.880 31 H 0.122 0.878 32 H 0.081 0.919 33 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -23.416 6.259 2.173 24.336 hybrid contribution 0.734 1.119 -0.114 1.343 sum -22.683 7.378 2.060 23.941 Atomic orbital electron populations 1.23065 0.78470 1.03990 1.01238 1.86143 1.21222 1.26643 1.88456 1.18788 0.91759 0.84216 0.95491 1.21043 1.00032 0.91692 1.11193 1.20904 0.92907 0.97757 0.98586 1.17937 0.90160 0.83627 1.10144 1.84887 1.80030 1.31807 1.33451 1.17800 0.83254 0.92763 0.97967 1.43599 1.03736 1.21983 1.62171 1.20589 0.89554 0.81499 0.76700 1.90694 1.72371 1.33346 1.40037 1.23300 0.92008 1.05954 1.06292 1.84818 1.05991 1.22702 1.77555 1.22298 0.88269 1.10973 1.45542 0.89257 1.24706 0.94047 0.97987 0.94491 1.69933 1.00328 1.36172 1.45102 0.86743 0.81059 0.82987 0.81116 1.19164 1.19852 1.15899 1.20566 0.91837 0.98608 1.06681 0.92659 0.92648 0.88209 0.85150 0.84897 0.76128 0.74553 0.88010 0.87821 0.91864 0.82123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.31 -3.94 10.50 -19.68 -0.21 -4.15 16 3 C 0.14 1.89 6.68 -39.26 -0.26 1.63 16 4 C -0.22 -2.29 9.03 -39.40 -0.36 -2.64 16 5 C -0.08 -0.83 9.97 -39.48 -0.39 -1.23 16 6 C 0.03 0.33 6.72 -39.09 -0.26 0.07 16 7 O -0.49 -4.76 12.92 -19.93 -0.26 -5.02 16 8 C 0.18 2.49 6.44 -83.51 -0.54 1.95 16 9 N -0.67 -9.14 5.28 -9.76 -0.05 -9.19 16 10 C 0.53 9.22 7.65 -10.99 -0.08 9.13 16 11 O -0.49 -10.21 13.03 5.55 0.07 -10.14 16 12 C -0.13 -2.33 6.16 36.01 0.22 -2.11 16 13 S -0.14 -3.39 18.55 -107.50 -1.99 -5.38 16 14 C -0.52 -14.85 10.04 30.94 0.31 -14.54 16 15 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 16 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 17 N -0.88 -26.31 13.97 55.49 0.78 -25.54 16 18 Si 0.86 21.55 27.74 -169.99 -4.72 16.83 16 19 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.24 -5.90 6.74 56.52 0.38 -5.52 16 22 C -0.16 -2.39 8.66 -39.27 -0.34 -2.73 16 23 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 24 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 25 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.13 0.99 6.28 -52.49 -0.33 0.66 16 27 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 28 H 0.38 2.21 9.07 45.56 0.41 2.63 16 29 H 0.42 4.55 8.34 -40.82 -0.34 4.20 16 30 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 31 H 0.10 1.80 8.14 -51.91 -0.42 1.37 16 32 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 33 H 0.16 2.87 5.78 -52.49 -0.30 2.57 16 LS Contribution 303.22 15.07 4.57 4.57 Total: -1.00 -34.54 303.22 -5.24 -39.78 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -2.62 Total: 4.81 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: -0.81 Total: -6.57 kcal Atomic # 7 Polarization: -35.45 SS G_CDS: 0.72 Total: -34.72 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -0.39 Total: -19.31 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.72 Total: 16.83 kcal Atomic # 16 Polarization: -3.39 SS G_CDS: -1.99 Total: -5.38 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -34.54 -5.24 -39.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340317657.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.625 kcal (2) G-P(sol) polarization free energy of solvation -34.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds