Wall clock time and date at job start Tue Mar 31 2020 06:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38161 * 120.02334 * 2 1 4 4 C 1.38336 * 120.04724 * 179.97438 * 3 2 1 5 5 Cl 1.73595 * 119.96139 * 179.97438 * 4 3 2 6 6 C 1.38396 * 120.08336 * 359.96352 * 4 3 2 7 7 C 1.38121 * 120.03842 * 359.78341 * 6 4 3 8 8 C 1.38701 * 120.01934 * 179.97438 * 2 1 3 9 9 O 1.35925 * 120.04573 * 359.97438 * 8 2 1 10 10 C 1.42896 * 117.00072 * 174.79296 * 9 8 2 11 11 H 1.09001 * 109.47430 * 324.99817 * 10 9 8 12 12 C 1.53000 * 109.46986 * 84.99887 * 10 9 8 13 13 C 1.50704 * 109.46980 * 204.99891 * 10 9 8 14 14 O 1.21290 * 119.99927 * 354.99761 * 13 10 9 15 15 N 1.34771 * 119.99820 * 175.00426 * 13 10 9 16 16 C 1.37100 * 119.99867 * 180.27367 * 15 13 10 17 17 H 1.07994 * 119.99926 * 359.71987 * 16 15 13 18 18 C 1.38955 * 119.99979 * 179.72104 * 16 15 13 19 19 N 1.31405 * 120.00157 * 180.02562 * 18 16 15 20 20 Si 1.86806 * 119.99951 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.46824 * 89.99970 * 20 18 16 22 22 H 1.48503 * 109.46764 * 209.99945 * 20 18 16 23 23 H 1.48498 * 109.47305 * 330.00033 * 20 18 16 24 24 H 1.09001 * 109.46810 * 270.01614 * 1 2 3 25 25 H 1.09002 * 109.46954 * 30.02115 * 1 2 3 26 26 H 1.08998 * 109.47330 * 150.01901 * 1 2 3 27 27 H 1.08007 * 119.97874 * 359.97438 * 3 2 1 28 28 H 1.07998 * 119.97957 * 180.02562 * 6 4 3 29 29 H 1.08000 * 120.02251 * 180.25676 * 7 6 4 30 30 H 1.09001 * 109.47015 * 299.99468 * 12 10 9 31 31 H 1.09001 * 109.47093 * 59.99724 * 12 10 9 32 32 H 1.09008 * 109.46825 * 180.02562 * 12 10 9 33 33 H 0.97002 * 120.00364 * 359.97438 * 15 13 10 34 34 H 0.97002 * 120.00280 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1962 0.0000 4 6 3.5817 1.1968 0.0005 5 17 4.4480 2.7011 -0.0001 6 6 4.2759 -0.0004 0.0018 7 6 3.5884 -1.1983 0.0071 8 6 2.2009 -1.2009 0.0005 9 8 1.5227 -2.3789 0.0016 10 6 2.2977 -3.5739 -0.1135 11 1 3.1523 -3.3914 -0.7650 12 6 2.7930 -3.9957 1.2713 13 6 1.4455 -4.6709 -0.6979 14 8 0.2657 -4.4783 -0.9029 15 7 1.9945 -5.8659 -0.9927 16 6 1.2205 -6.8621 -1.5296 17 1 0.1700 -6.6906 -1.7122 18 6 1.7878 -8.0923 -1.8389 19 7 1.0461 -9.0469 -2.3540 20 14 3.6050 -8.3886 -1.5237 21 1 3.7880 -8.9285 -0.1525 22 1 4.1263 -9.3650 -2.5138 23 1 4.3454 -7.1080 -1.6543 24 1 -0.3633 0.0003 1.0277 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3634 -0.8901 -0.5135 27 1 1.6583 2.1316 -0.0004 28 1 5.3559 0.0020 0.0027 29 1 4.1304 -2.1325 0.0123 30 1 3.4094 -3.2023 1.6940 31 1 1.9384 -4.1782 1.9229 32 1 3.3846 -4.9071 1.1835 33 1 2.9381 -6.0199 -0.8290 34 1 1.4420 -9.9059 -2.5695 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343032551.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:33 Heat of formation + Delta-G solvation = -58.096851 kcal Electronic energy + Delta-G solvation = -19566.317435 eV Core-core repulsion = 16297.455270 eV Total energy + Delta-G solvation = -3268.862165 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.55479 -38.73608 -37.38379 -36.30344 -34.10838 -33.10138 -32.06780 -31.10298 -29.83295 -26.93184 -25.53442 -24.03318 -22.26497 -21.64731 -19.50547 -18.67520 -18.07831 -16.49532 -16.24741 -15.65980 -15.48984 -15.03861 -14.59399 -14.17528 -13.89998 -13.34101 -13.21030 -13.14610 -12.86692 -12.81618 -12.67382 -12.31990 -12.18006 -11.96481 -11.66691 -11.48621 -11.28169 -11.19409 -10.79771 -10.67007 -10.63642 -10.07781 -9.70487 -9.05961 -8.64550 -8.31828 -8.07098 -6.41781 -3.94614 1.07471 1.12498 2.03362 2.93417 2.97884 3.03476 3.10496 3.45508 3.53056 4.00183 4.42738 4.57337 4.65029 4.87963 4.99511 5.00984 5.10480 5.27677 5.33810 5.44840 5.48232 5.66202 5.67615 5.74469 5.79637 5.95166 6.05959 6.13209 6.17649 6.36433 6.52142 7.31979 7.48722 7.98795 8.45531 8.81608 9.27381 9.63599 10.70690 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.029432 B = 0.003746 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.120248 B = 7472.270622 C = 8110.612889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.104 4.104 3 C -0.074 4.074 4 C -0.076 4.076 5 Cl -0.080 7.080 6 C -0.075 4.075 7 C -0.201 4.201 8 C 0.144 3.856 9 O -0.271 6.271 10 C 0.070 3.930 11 H 0.086 0.914 12 C -0.175 4.175 13 C 0.453 3.547 14 O -0.554 6.554 15 N -0.579 5.579 16 C -0.308 4.308 17 H 0.122 0.878 18 C 0.045 3.955 19 N -0.875 5.875 20 Si 0.877 3.123 21 H -0.268 1.268 22 H -0.274 1.274 23 H -0.269 1.269 24 H 0.071 0.929 25 H 0.065 0.935 26 H 0.082 0.918 27 H 0.137 0.863 28 H 0.133 0.867 29 H 0.140 0.860 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.371 0.629 34 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.969 17.776 6.534 20.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.105 4.105 3 C -0.093 4.093 4 C -0.102 4.102 5 Cl -0.052 7.052 6 C -0.093 4.093 7 C -0.220 4.220 8 C 0.097 3.903 9 O -0.182 6.182 10 C 0.010 3.990 11 H 0.103 0.897 12 C -0.233 4.233 13 C 0.237 3.763 14 O -0.435 6.435 15 N -0.219 5.219 16 C -0.437 4.437 17 H 0.140 0.860 18 C -0.159 4.159 19 N -0.514 5.514 20 Si 0.703 3.297 21 H -0.194 1.194 22 H -0.199 1.199 23 H -0.195 1.195 24 H 0.089 0.911 25 H 0.084 0.916 26 H 0.101 0.899 27 H 0.155 0.845 28 H 0.151 0.849 29 H 0.158 0.842 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.204 0.796 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.987 17.752 6.317 20.466 hybrid contribution 1.914 -0.382 0.140 1.957 sum 9.901 17.370 6.457 21.011 Atomic orbital electron populations 1.20666 0.89556 1.03554 1.02701 1.19224 0.97104 0.89477 1.04740 1.20727 0.91729 0.97833 0.98987 1.20683 0.92301 0.86832 1.10418 1.98346 1.76920 1.32592 1.97314 1.20771 1.00169 0.90091 0.98306 1.21304 0.93182 0.99119 1.08355 1.19064 0.90389 0.86544 0.94268 1.86269 1.34566 1.11128 1.86268 1.22301 0.94183 0.84388 0.98119 0.89651 1.22346 1.02546 1.02295 0.96073 1.19145 0.88558 0.83225 0.85343 1.90604 1.15816 1.80737 1.56365 1.42057 1.10591 1.11675 1.57534 1.19432 0.96275 0.90061 1.37888 0.86030 1.25031 0.98421 0.95401 0.97004 1.69608 1.35999 1.04381 1.41410 0.86707 0.84701 0.78881 0.79366 1.19359 1.19904 1.19458 0.91082 0.91634 0.89924 0.84505 0.84899 0.84225 0.91472 0.90500 0.90461 0.79556 0.91375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.31 9.79 36.01 0.35 -0.96 16 2 C -0.10 -1.36 5.89 -104.48 -0.62 -1.98 16 3 C -0.07 -0.84 9.48 -39.57 -0.38 -1.21 16 4 C -0.08 -0.85 6.32 -39.49 -0.25 -1.10 16 5 Cl -0.08 -0.81 28.95 -51.86 -1.50 -2.31 16 6 C -0.07 -0.82 9.82 -39.57 -0.39 -1.21 16 7 C -0.20 -2.45 8.24 -39.44 -0.33 -2.78 16 8 C 0.14 2.09 6.57 -39.22 -0.26 1.83 16 9 O -0.27 -4.71 8.38 -39.37 -0.33 -5.04 16 10 C 0.07 1.17 2.63 -27.88 -0.07 1.10 16 11 H 0.09 1.22 6.31 -51.93 -0.33 0.89 16 12 C -0.17 -2.37 9.13 37.16 0.34 -2.03 16 13 C 0.45 10.21 7.13 -10.99 -0.08 10.13 16 14 O -0.55 -15.08 16.08 -14.31 -0.23 -15.31 16 15 N -0.58 -13.33 5.05 -10.96 -0.06 -13.38 16 16 C -0.31 -8.48 10.16 -14.93 -0.15 -8.63 16 17 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 18 C 0.05 1.21 5.50 -17.47 -0.10 1.11 16 19 N -0.87 -24.86 13.96 55.50 0.77 -24.09 16 20 Si 0.88 18.52 27.74 -169.99 -4.71 13.81 16 21 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 22 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 23 H -0.27 -5.11 6.52 56.52 0.37 -4.75 16 24 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 26 H 0.08 1.20 7.53 -51.93 -0.39 0.81 16 27 H 0.14 1.25 8.06 -52.48 -0.42 0.83 16 28 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 29 H 0.14 1.49 5.43 -52.49 -0.28 1.20 16 30 H 0.07 0.74 6.91 -51.93 -0.36 0.38 16 31 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.08 0.95 7.93 -51.92 -0.41 0.54 16 33 H 0.37 7.36 5.55 -40.82 -0.23 7.13 16 34 H 0.28 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 307.40 15.07 4.63 4.63 Total: -1.00 -31.54 307.40 -7.01 -38.55 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -3.67 Total: 8.86 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: -1.92 Total: -5.72 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: 0.72 Total: -37.47 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: -0.56 Total: -20.35 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -4.71 Total: 13.81 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -1.50 Total: -2.31 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.54 -7.01 -38.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343032551.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.546 kcal (2) G-P(sol) polarization free energy of solvation -31.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds