Wall clock time and date at job start Tue Mar 31 2020 06:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38161 * 120.02334 * 2 1 4 4 C 1.38336 * 120.04724 * 179.97438 * 3 2 1 5 5 Cl 1.73595 * 119.96139 * 179.97438 * 4 3 2 6 6 C 1.38396 * 120.08336 * 359.96352 * 4 3 2 7 7 C 1.38121 * 120.03842 * 359.78341 * 6 4 3 8 8 C 1.38701 * 120.01934 * 179.97438 * 2 1 3 9 9 O 1.35925 * 120.04573 * 359.97438 * 8 2 1 10 10 C 1.42896 * 117.00072 * 174.79296 * 9 8 2 11 11 H 1.09001 * 109.47430 * 324.99817 * 10 9 8 12 12 C 1.53000 * 109.46986 * 84.99887 * 10 9 8 13 13 C 1.50704 * 109.46980 * 204.99891 * 10 9 8 14 14 O 1.21290 * 119.99927 * 354.99761 * 13 10 9 15 15 N 1.34771 * 119.99820 * 175.00426 * 13 10 9 16 16 C 1.37100 * 119.99867 * 180.27367 * 15 13 10 17 17 H 1.07994 * 119.99926 * 359.71987 * 16 15 13 18 18 C 1.38955 * 119.99979 * 179.72104 * 16 15 13 19 19 N 1.31405 * 120.00157 * 180.02562 * 18 16 15 20 20 Si 1.86806 * 119.99951 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.46824 * 89.99970 * 20 18 16 22 22 H 1.48503 * 109.46764 * 209.99945 * 20 18 16 23 23 H 1.48498 * 109.47305 * 330.00033 * 20 18 16 24 24 H 1.09001 * 109.46810 * 270.01614 * 1 2 3 25 25 H 1.09002 * 109.46954 * 30.02115 * 1 2 3 26 26 H 1.08998 * 109.47330 * 150.01901 * 1 2 3 27 27 H 1.08007 * 119.97874 * 359.97438 * 3 2 1 28 28 H 1.07998 * 119.97957 * 180.02562 * 6 4 3 29 29 H 1.08000 * 120.02251 * 180.25676 * 7 6 4 30 30 H 1.09001 * 109.47015 * 299.99468 * 12 10 9 31 31 H 1.09001 * 109.47093 * 59.99724 * 12 10 9 32 32 H 1.09008 * 109.46825 * 180.02562 * 12 10 9 33 33 H 0.97002 * 120.00364 * 359.97438 * 15 13 10 34 34 H 0.97002 * 120.00280 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1962 0.0000 4 6 3.5817 1.1968 0.0005 5 17 4.4480 2.7011 -0.0001 6 6 4.2759 -0.0004 0.0018 7 6 3.5884 -1.1983 0.0071 8 6 2.2009 -1.2009 0.0005 9 8 1.5227 -2.3789 0.0016 10 6 2.2977 -3.5739 -0.1135 11 1 3.1523 -3.3914 -0.7650 12 6 2.7930 -3.9957 1.2713 13 6 1.4455 -4.6709 -0.6979 14 8 0.2657 -4.4783 -0.9029 15 7 1.9945 -5.8659 -0.9927 16 6 1.2205 -6.8621 -1.5296 17 1 0.1700 -6.6906 -1.7122 18 6 1.7878 -8.0923 -1.8389 19 7 1.0461 -9.0469 -2.3540 20 14 3.6050 -8.3886 -1.5237 21 1 3.7880 -8.9285 -0.1525 22 1 4.1263 -9.3650 -2.5138 23 1 4.3454 -7.1080 -1.6543 24 1 -0.3633 0.0003 1.0277 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3634 -0.8901 -0.5135 27 1 1.6583 2.1316 -0.0004 28 1 5.3559 0.0020 0.0027 29 1 4.1304 -2.1325 0.0123 30 1 3.4094 -3.2023 1.6940 31 1 1.9384 -4.1782 1.9229 32 1 3.3846 -4.9071 1.1835 33 1 2.9381 -6.0199 -0.8290 34 1 1.4420 -9.9059 -2.5695 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343032551.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:32 Heat of formation + Delta-G solvation = -78.181303 kcal Electronic energy + Delta-G solvation = -19567.188362 eV Core-core repulsion = 16297.455270 eV Total energy + Delta-G solvation = -3269.733092 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.69309 -40.27544 -38.60603 -37.20462 -36.10620 -34.21375 -33.79121 -32.46110 -30.79100 -27.87155 -27.34680 -25.33260 -23.45357 -22.60697 -21.32530 -20.42874 -19.19293 -17.96930 -17.32162 -17.01555 -16.73587 -16.61550 -15.70396 -15.56710 -15.36419 -14.81045 -14.47580 -14.28147 -14.23628 -14.15614 -13.71398 -13.58139 -13.25695 -13.09171 -12.99761 -12.68086 -12.48793 -12.45622 -12.14595 -11.99161 -11.69010 -11.64383 -11.57083 -10.49241 -10.33655 -9.92839 -9.07152 -8.45831 -6.09342 0.18132 0.19827 1.18383 1.28895 1.33919 1.44083 1.77598 1.83113 2.20851 2.55481 2.92987 3.08151 3.60923 3.73893 3.78436 3.92387 3.99233 4.11558 4.21623 4.42192 4.52447 4.66745 4.68434 4.77961 4.82691 5.03221 5.11620 5.20336 5.21886 5.37270 5.46266 5.60312 5.85644 6.28886 6.52319 6.78303 7.26625 7.80303 8.71220 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.029432 B = 0.003746 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.120248 B = 7472.270622 C = 8110.612889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.119 4.119 3 C -0.072 4.072 4 C -0.078 4.078 5 Cl -0.068 7.068 6 C -0.072 4.072 7 C -0.198 4.198 8 C 0.114 3.886 9 O -0.303 6.303 10 C 0.081 3.919 11 H 0.119 0.881 12 C -0.170 4.170 13 C 0.449 3.551 14 O -0.613 6.613 15 N -0.573 5.573 16 C -0.335 4.335 17 H 0.056 0.944 18 C -0.009 4.009 19 N -0.928 5.928 20 Si 0.961 3.039 21 H -0.251 1.251 22 H -0.273 1.273 23 H -0.227 1.227 24 H 0.076 0.924 25 H 0.087 0.913 26 H 0.048 0.952 27 H 0.157 0.843 28 H 0.159 0.841 29 H 0.159 0.841 30 H 0.100 0.900 31 H 0.058 0.942 32 H 0.096 0.904 33 H 0.393 0.607 34 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.272 19.444 7.659 24.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.120 4.120 3 C -0.090 4.090 4 C -0.104 4.104 5 Cl -0.039 7.039 6 C -0.090 4.090 7 C -0.216 4.216 8 C 0.068 3.932 9 O -0.216 6.216 10 C 0.021 3.979 11 H 0.136 0.864 12 C -0.227 4.227 13 C 0.236 3.764 14 O -0.498 6.498 15 N -0.215 5.215 16 C -0.464 4.464 17 H 0.074 0.926 18 C -0.209 4.209 19 N -0.568 5.568 20 Si 0.780 3.220 21 H -0.176 1.176 22 H -0.198 1.198 23 H -0.150 1.150 24 H 0.095 0.905 25 H 0.106 0.894 26 H 0.067 0.933 27 H 0.174 0.826 28 H 0.177 0.823 29 H 0.177 0.823 30 H 0.119 0.881 31 H 0.077 0.923 32 H 0.115 0.885 33 H 0.229 0.771 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 12.309 19.453 7.455 24.197 hybrid contribution 0.455 -0.762 -0.240 0.920 sum 12.764 18.691 7.215 23.755 Atomic orbital electron populations 1.20627 0.89728 1.02919 1.02931 1.19412 0.97360 0.89936 1.05288 1.20908 0.92091 0.97866 0.98176 1.20871 0.92450 0.87630 1.09496 1.98357 1.76551 1.31821 1.97201 1.21070 1.01457 0.89406 0.97081 1.21492 0.92087 1.00474 1.07562 1.19352 0.91628 0.85656 0.96521 1.86225 1.35985 1.12104 1.87254 1.22188 0.93010 0.82487 1.00219 0.86405 1.22367 1.02494 1.04323 0.93516 1.20391 0.88522 0.84125 0.83384 1.90573 1.18972 1.81998 1.58245 1.41804 1.11152 1.11074 1.57433 1.18992 0.94499 0.92459 1.40423 0.92617 1.26140 1.05265 0.93977 0.95520 1.69790 1.39308 1.05245 1.42429 0.85430 0.76185 0.80584 0.79809 1.17550 1.19817 1.15010 0.90490 0.89392 0.93322 0.82564 0.82312 0.82343 0.88138 0.92250 0.88545 0.77097 0.90841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.58 9.79 71.24 0.70 -1.88 16 2 C -0.12 -2.99 5.89 -19.77 -0.12 -3.10 16 3 C -0.07 -1.46 9.48 22.27 0.21 -1.25 16 4 C -0.08 -1.50 6.32 22.33 0.14 -1.36 16 5 Cl -0.07 -1.16 28.95 -2.72 -0.08 -1.24 16 6 C -0.07 -1.30 9.82 22.28 0.22 -1.08 16 7 C -0.20 -4.16 8.24 22.36 0.18 -3.98 16 8 C 0.11 3.15 6.57 22.50 0.15 3.30 16 9 O -0.30 -10.53 8.38 -73.72 -0.62 -11.14 16 10 C 0.08 2.58 2.63 29.85 0.08 2.66 16 11 H 0.12 2.97 6.31 -2.39 -0.02 2.96 16 12 C -0.17 -4.10 9.13 71.98 0.66 -3.44 16 13 C 0.45 20.68 7.13 87.66 0.63 21.31 16 14 O -0.61 -35.60 16.08 15.93 0.26 -35.34 16 15 N -0.57 -26.43 5.05 -306.99 -1.55 -27.98 16 16 C -0.33 -19.32 10.16 84.04 0.85 -18.47 16 17 H 0.06 3.86 7.39 -2.91 -0.02 3.84 16 18 C -0.01 -0.51 5.50 84.93 0.47 -0.04 16 19 N -0.93 -54.76 13.96 21.66 0.30 -54.46 16 20 Si 0.96 36.66 27.74 68.60 1.90 38.56 16 21 H -0.25 -8.96 7.11 99.48 0.71 -8.26 16 22 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16 23 H -0.23 -7.08 6.52 99.48 0.65 -6.43 16 24 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.09 1.67 8.09 -2.39 -0.02 1.65 16 26 H 0.05 1.51 7.53 -2.39 -0.02 1.49 16 27 H 0.16 2.45 8.06 -2.91 -0.02 2.43 16 28 H 0.16 2.04 8.06 -2.91 -0.02 2.02 16 29 H 0.16 2.63 5.43 -2.91 -0.02 2.61 16 30 H 0.10 1.79 6.91 -2.39 -0.02 1.77 16 31 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.10 1.96 7.93 -2.38 -0.02 1.94 16 33 H 0.39 14.49 5.55 -92.71 -0.51 13.98 16 34 H 0.28 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -75.91 307.40 4.95 -70.97 By element: Atomic # 1 Polarization: 27.40 SS G_CDS: 0.57 Total: 27.97 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: 4.17 Total: -7.34 kcal Atomic # 7 Polarization: -81.19 SS G_CDS: -1.25 Total: -82.44 kcal Atomic # 8 Polarization: -46.12 SS G_CDS: -0.36 Total: -46.48 kcal Atomic # 14 Polarization: 36.66 SS G_CDS: 1.90 Total: 38.56 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -0.08 Total: -1.24 kcal Total: -75.91 4.95 -70.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343032551.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.213 kcal (2) G-P(sol) polarization free energy of solvation -75.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds