Wall clock time and date at job start Tue Mar 31 2020 06:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38164 * 120.02310 * 2 1 4 4 C 1.38352 * 120.04359 * 179.97438 * 3 2 1 5 5 Cl 1.73600 * 119.95568 * 179.97438 * 4 3 2 6 6 C 1.38390 * 120.08166 * 359.72267 * 4 3 2 7 7 C 1.38115 * 120.04432 * 0.56033 * 6 4 3 8 8 C 1.38698 * 120.02390 * 179.97438 * 2 1 3 9 9 O 1.35922 * 120.03966 * 359.97438 * 8 2 1 10 10 C 1.42903 * 117.00222 * 180.02562 * 9 8 2 11 11 C 1.50698 * 109.47221 * 180.02562 * 10 9 8 12 12 O 1.21275 * 120.00241 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00066 * 180.02562 * 11 10 9 14 14 C 1.46492 * 120.00077 * 179.97438 * 13 11 10 15 15 C 1.50699 * 109.47359 * 179.97438 * 14 13 11 16 16 H 1.08009 * 119.99940 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00776 * 179.97438 * 15 14 13 18 18 N 1.31520 * 119.99395 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00724 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.46952 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47444 * 119.99850 * 19 17 15 22 22 H 1.48500 * 109.46891 * 239.99966 * 19 17 15 23 23 H 1.09001 * 109.47190 * 270.02310 * 1 2 3 24 24 H 1.09006 * 109.47259 * 30.02171 * 1 2 3 25 25 H 1.09002 * 109.47588 * 150.02279 * 1 2 3 26 26 H 1.08005 * 119.98040 * 359.96000 * 3 2 1 27 27 H 1.07998 * 119.97387 * 180.27463 * 6 4 3 28 28 H 1.08002 * 120.02428 * 179.72213 * 7 6 4 29 29 H 1.08997 * 109.46730 * 299.99822 * 10 9 8 30 30 H 1.08994 * 109.47073 * 59.99866 * 10 9 8 31 31 H 0.97000 * 119.99557 * 359.97438 * 13 11 10 32 32 H 1.09001 * 109.47542 * 299.99738 * 14 13 11 33 33 H 1.09007 * 109.47477 * 60.00019 * 14 13 11 34 34 H 0.97000 * 119.99531 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1963 0.0000 4 6 3.5817 1.1968 0.0005 5 17 4.4480 2.7012 -0.0001 6 6 4.2758 -0.0005 0.0069 7 6 3.5883 -1.1984 0.0010 8 6 2.2009 -1.2009 0.0005 9 8 1.5226 -2.3787 0.0016 10 6 2.3022 -3.5764 0.0027 11 6 1.3855 -4.7725 0.0031 12 8 0.1830 -4.6150 0.0030 13 7 1.9020 -6.0174 0.0046 14 6 1.0109 -7.1801 0.0056 15 6 1.8330 -8.4431 0.0066 16 1 2.9115 -8.3855 0.0069 17 6 1.2085 -9.6724 0.0082 18 7 -0.1049 -9.7426 0.0093 19 14 2.2275 -11.2379 0.0102 20 1 3.6710 -10.8889 0.0091 21 1 1.9109 -12.0331 1.2236 22 1 1.9108 -12.0361 -1.2013 23 1 -0.3633 0.0004 1.0277 24 1 -0.3634 0.8898 -0.5142 25 1 -0.3634 -0.8902 -0.5135 26 1 1.6582 2.1316 -0.0007 27 1 5.3558 0.0019 0.0118 28 1 4.1304 -2.1325 0.0014 29 1 2.9310 -3.6013 -0.8873 30 1 2.9310 -3.5998 0.8926 31 1 2.8638 -6.1434 0.0051 32 1 0.3817 -7.1551 0.8954 33 1 0.3822 -7.1570 -0.8846 34 1 -0.5442 -10.6074 0.0108 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343900545.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:13 Heat of formation + Delta-G solvation = -67.699948 kcal Electronic energy + Delta-G solvation = -18770.784964 eV Core-core repulsion = 15501.506378 eV Total energy + Delta-G solvation = -3269.278586 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.58248 -38.93374 -37.57711 -36.40280 -34.30028 -33.06775 -32.44355 -30.32199 -28.96932 -27.09237 -26.60047 -23.17286 -22.15117 -21.85094 -19.91404 -18.31380 -17.51110 -16.40159 -16.33895 -16.30032 -15.55372 -15.16057 -14.64752 -14.45201 -14.35530 -13.59808 -13.48073 -13.27931 -12.91711 -12.78601 -12.64759 -12.11618 -12.05241 -11.85917 -11.55934 -11.47981 -11.03645 -10.97020 -10.96256 -10.79743 -10.38006 -9.46256 -9.21829 -9.18390 -8.82514 -8.25726 -8.03185 -6.23241 -4.30859 0.94907 0.98650 1.93010 2.76375 3.12092 3.19569 3.26951 3.29636 3.33609 4.07060 4.30297 4.43563 4.52268 4.79581 4.88587 5.03212 5.09444 5.13604 5.19435 5.30055 5.35705 5.55289 5.63039 5.80902 5.93349 5.99189 6.21303 6.36876 7.09444 7.20696 7.29350 7.41795 7.57144 7.88197 8.45245 8.67337 8.92157 9.35752 10.86940 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.039993 B = 0.002684 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.953506 B =10430.370468 C =11104.574436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.102 4.102 3 C -0.074 4.074 4 C -0.073 4.073 5 Cl -0.077 7.077 6 C -0.075 4.075 7 C -0.197 4.197 8 C 0.139 3.861 9 O -0.279 6.279 10 C 0.037 3.963 11 C 0.500 3.500 12 O -0.532 6.532 13 N -0.707 5.707 14 C 0.251 3.749 15 C -0.545 4.545 16 H 0.064 0.936 17 C 0.064 3.936 18 N -0.884 5.884 19 Si 0.905 3.095 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 H 0.072 0.928 24 H 0.066 0.934 25 H 0.080 0.920 26 H 0.138 0.862 27 H 0.135 0.865 28 H 0.140 0.860 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.392 0.608 32 H 0.029 0.971 33 H 0.029 0.971 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.233 20.985 -0.011 22.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.103 4.103 3 C -0.093 4.093 4 C -0.100 4.100 5 Cl -0.049 7.049 6 C -0.093 4.093 7 C -0.216 4.216 8 C 0.092 3.908 9 O -0.191 6.191 10 C -0.041 4.041 11 C 0.283 3.717 12 O -0.409 6.409 13 N -0.357 5.357 14 C 0.131 3.869 15 C -0.583 4.583 16 H 0.083 0.917 17 C -0.140 4.140 18 N -0.521 5.521 19 Si 0.732 3.268 20 H -0.196 1.196 21 H -0.207 1.207 22 H -0.207 1.207 23 H 0.091 0.909 24 H 0.085 0.915 25 H 0.099 0.901 26 H 0.156 0.844 27 H 0.153 0.847 28 H 0.157 0.843 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.225 0.775 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 8.039 21.021 -0.012 22.506 hybrid contribution 1.412 -0.932 0.012 1.692 sum 9.451 20.089 0.000 22.201 Atomic orbital electron populations 1.20669 0.89480 1.03430 1.02927 1.19226 0.97137 0.89448 1.04473 1.20752 0.91754 0.97874 0.98903 1.20722 0.92339 0.87007 1.09923 1.98355 1.76853 1.32410 1.97261 1.20787 1.00297 0.90070 0.98175 1.21250 0.92906 0.99225 1.08224 1.19017 0.90388 0.86175 0.95174 1.86213 1.34125 1.11186 1.87533 1.22698 0.94414 0.83619 1.03414 1.19836 0.88932 0.84101 0.78836 1.90715 1.15042 1.85792 1.49329 1.46358 1.11144 1.05673 1.72533 1.19179 0.89486 0.80241 0.98042 1.21231 0.93239 0.90360 1.53493 0.91746 1.24961 0.95065 0.99404 0.94603 1.69986 1.07895 1.25565 1.48681 0.86336 0.80073 0.82540 0.77815 1.19613 1.20746 1.20749 0.90886 0.91523 0.90129 0.84377 0.84741 0.84278 0.89242 0.89223 0.77520 0.95256 0.95262 0.92394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 9.79 36.00 0.35 -0.81 16 2 C -0.10 -1.17 5.89 -104.48 -0.62 -1.79 16 3 C -0.07 -0.74 9.48 -39.57 -0.38 -1.12 16 4 C -0.07 -0.73 6.32 -39.48 -0.25 -0.98 16 5 Cl -0.08 -0.71 28.95 -51.86 -1.50 -2.21 16 6 C -0.07 -0.71 9.82 -39.57 -0.39 -1.10 16 7 C -0.20 -2.03 9.04 -39.44 -0.36 -2.39 16 8 C 0.14 1.75 6.66 -39.22 -0.26 1.49 16 9 O -0.28 -4.21 8.71 -39.40 -0.34 -4.55 16 10 C 0.04 0.50 5.22 36.00 0.19 0.69 16 11 C 0.50 9.60 7.91 -10.99 -0.09 9.51 16 12 O -0.53 -12.79 16.50 -14.35 -0.24 -13.02 16 13 N -0.71 -14.00 5.55 -61.48 -0.34 -14.34 16 14 C 0.25 6.42 5.43 -5.20 -0.03 6.40 16 15 C -0.54 -14.30 9.28 -34.44 -0.32 -14.62 16 16 H 0.06 1.57 7.60 -52.48 -0.40 1.17 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 18 N -0.88 -25.55 13.29 55.43 0.74 -24.81 16 19 Si 0.91 20.35 29.54 -169.99 -5.02 15.33 16 20 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 23 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 24 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 25 H 0.08 1.02 7.53 -51.93 -0.39 0.63 16 26 H 0.14 1.10 8.06 -52.48 -0.42 0.68 16 27 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 28 H 0.14 1.14 6.30 -52.49 -0.33 0.81 16 29 H 0.09 0.95 7.66 -51.93 -0.40 0.55 16 30 H 0.09 0.95 7.66 -51.93 -0.40 0.56 16 31 H 0.39 6.36 8.32 -40.82 -0.34 6.02 16 32 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 316.15 15.07 4.76 4.76 Total: -1.00 -31.98 316.15 -8.10 -40.08 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -3.92 Total: 1.86 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -2.24 Total: -3.09 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 0.40 Total: -39.16 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -0.58 Total: -17.57 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.50 Total: -2.21 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.98 -8.10 -40.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343900545.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.617 kcal (2) G-P(sol) polarization free energy of solvation -31.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds