Wall clock time and date at job start Tue Mar 31 2020 06:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38164 * 120.02310 * 2 1 4 4 C 1.38352 * 120.04359 * 179.97438 * 3 2 1 5 5 Cl 1.73600 * 119.95568 * 179.97438 * 4 3 2 6 6 C 1.38390 * 120.08166 * 359.72267 * 4 3 2 7 7 C 1.38115 * 120.04432 * 0.56033 * 6 4 3 8 8 C 1.38698 * 120.02390 * 179.97438 * 2 1 3 9 9 O 1.35922 * 120.03966 * 359.97438 * 8 2 1 10 10 C 1.42903 * 117.00222 * 180.02562 * 9 8 2 11 11 C 1.50698 * 109.47221 * 180.02562 * 10 9 8 12 12 O 1.21275 * 120.00241 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00066 * 180.02562 * 11 10 9 14 14 C 1.46492 * 120.00077 * 179.97438 * 13 11 10 15 15 C 1.50699 * 109.47359 * 179.97438 * 14 13 11 16 16 H 1.08009 * 119.99940 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00776 * 179.97438 * 15 14 13 18 18 N 1.31520 * 119.99395 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00724 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.46952 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47444 * 119.99850 * 19 17 15 22 22 H 1.48500 * 109.46891 * 239.99966 * 19 17 15 23 23 H 1.09001 * 109.47190 * 270.02310 * 1 2 3 24 24 H 1.09006 * 109.47259 * 30.02171 * 1 2 3 25 25 H 1.09002 * 109.47588 * 150.02279 * 1 2 3 26 26 H 1.08005 * 119.98040 * 359.96000 * 3 2 1 27 27 H 1.07998 * 119.97387 * 180.27463 * 6 4 3 28 28 H 1.08002 * 120.02428 * 179.72213 * 7 6 4 29 29 H 1.08997 * 109.46730 * 299.99822 * 10 9 8 30 30 H 1.08994 * 109.47073 * 59.99866 * 10 9 8 31 31 H 0.97000 * 119.99557 * 359.97438 * 13 11 10 32 32 H 1.09001 * 109.47542 * 299.99738 * 14 13 11 33 33 H 1.09007 * 109.47477 * 60.00019 * 14 13 11 34 34 H 0.97000 * 119.99531 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1963 0.0000 4 6 3.5817 1.1968 0.0005 5 17 4.4480 2.7012 -0.0001 6 6 4.2758 -0.0005 0.0069 7 6 3.5883 -1.1984 0.0010 8 6 2.2009 -1.2009 0.0005 9 8 1.5226 -2.3787 0.0016 10 6 2.3022 -3.5764 0.0027 11 6 1.3855 -4.7725 0.0031 12 8 0.1830 -4.6150 0.0030 13 7 1.9020 -6.0174 0.0046 14 6 1.0109 -7.1801 0.0056 15 6 1.8330 -8.4431 0.0066 16 1 2.9115 -8.3855 0.0069 17 6 1.2085 -9.6724 0.0082 18 7 -0.1049 -9.7426 0.0093 19 14 2.2275 -11.2379 0.0102 20 1 3.6710 -10.8889 0.0091 21 1 1.9109 -12.0331 1.2236 22 1 1.9108 -12.0361 -1.2013 23 1 -0.3633 0.0004 1.0277 24 1 -0.3634 0.8898 -0.5142 25 1 -0.3634 -0.8902 -0.5135 26 1 1.6582 2.1316 -0.0007 27 1 5.3558 0.0019 0.0118 28 1 4.1304 -2.1325 0.0014 29 1 2.9310 -3.6013 -0.8873 30 1 2.9310 -3.5998 0.8926 31 1 2.8638 -6.1434 0.0051 32 1 0.3817 -7.1551 0.8954 33 1 0.3822 -7.1570 -0.8846 34 1 -0.5442 -10.6074 0.0108 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343900545.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:13 Heat of formation + Delta-G solvation = -88.099518 kcal Electronic energy + Delta-G solvation = -18771.669556 eV Core-core repulsion = 15501.506378 eV Total energy + Delta-G solvation = -3270.163178 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.55015 -40.36889 -38.58724 -37.19183 -36.18106 -34.41523 -33.84731 -31.28096 -30.33720 -28.45776 -27.74076 -24.81906 -23.36046 -22.67928 -21.51674 -19.26501 -19.09007 -17.79274 -17.44577 -17.26577 -16.90583 -16.85676 -15.96769 -15.83901 -15.46236 -14.76759 -14.69348 -14.21022 -14.12944 -13.90792 -13.82367 -13.70300 -13.53060 -12.91147 -12.78292 -12.70683 -12.61844 -12.26872 -12.20457 -11.73166 -11.65363 -11.46543 -10.85934 -10.83061 -9.94405 -9.91772 -9.10130 -8.29727 -6.46322 0.17158 0.19166 1.18014 1.44265 1.45412 1.57988 1.59841 1.65181 2.37284 2.54498 2.81557 3.05880 3.61114 3.74666 3.81380 4.02320 4.11990 4.12545 4.23067 4.44220 4.54439 4.77441 4.82783 5.01793 5.08751 5.18564 5.20958 5.21618 5.35257 5.43301 5.56547 5.64936 5.82489 6.25131 6.63891 6.81269 7.21943 7.39696 8.82741 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.039993 B = 0.002684 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.953506 B =10430.370468 C =11104.574436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.118 4.118 3 C -0.074 4.074 4 C -0.078 4.078 5 Cl -0.069 7.069 6 C -0.074 4.074 7 C -0.193 4.193 8 C 0.114 3.886 9 O -0.312 6.312 10 C 0.051 3.949 11 C 0.496 3.504 12 O -0.590 6.590 13 N -0.698 5.698 14 C 0.266 3.734 15 C -0.553 4.553 16 H 0.088 0.912 17 C 0.002 3.998 18 N -0.932 5.932 19 Si 0.985 3.015 20 H -0.250 1.250 21 H -0.281 1.281 22 H -0.281 1.281 23 H 0.072 0.928 24 H 0.088 0.912 25 H 0.053 0.947 26 H 0.155 0.845 27 H 0.158 0.842 28 H 0.164 0.836 29 H 0.127 0.873 30 H 0.127 0.873 31 H 0.414 0.586 32 H -0.010 1.010 33 H -0.011 1.011 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.626 21.684 0.003 25.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.119 4.119 3 C -0.092 4.092 4 C -0.105 4.105 5 Cl -0.041 7.041 6 C -0.092 4.092 7 C -0.211 4.211 8 C 0.069 3.931 9 O -0.224 6.224 10 C -0.027 4.027 11 C 0.282 3.718 12 O -0.470 6.470 13 N -0.350 5.350 14 C 0.143 3.857 15 C -0.591 4.591 16 H 0.106 0.894 17 C -0.197 4.197 18 N -0.570 5.570 19 Si 0.809 3.191 20 H -0.174 1.174 21 H -0.206 1.206 22 H -0.206 1.206 23 H 0.091 0.909 24 H 0.106 0.894 25 H 0.072 0.928 26 H 0.173 0.827 27 H 0.176 0.824 28 H 0.181 0.819 29 H 0.144 0.856 30 H 0.145 0.855 31 H 0.250 0.750 32 H 0.007 0.993 33 H 0.007 0.993 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.498 21.759 0.003 24.610 hybrid contribution 0.341 -1.004 0.007 1.061 sum 11.839 20.755 0.009 23.894 Atomic orbital electron populations 1.20633 0.89673 1.03123 1.02849 1.19407 0.97369 0.89963 1.05127 1.20913 0.92066 0.97955 0.98296 1.20914 0.92504 0.87684 1.09377 1.98362 1.76583 1.31935 1.97188 1.21086 1.01500 0.89528 0.97135 1.21499 0.91885 1.00621 1.07109 1.19256 0.91511 0.85330 0.97053 1.86157 1.35620 1.12192 1.88470 1.22622 0.92547 0.80683 1.06864 1.20888 0.89042 0.85294 0.76583 1.90689 1.18088 1.86711 1.51532 1.46004 1.11551 1.04788 1.72638 1.18602 0.89782 0.82937 0.94368 1.21643 0.94362 0.90380 1.52731 0.89363 1.26081 0.96174 1.03574 0.93911 1.70150 1.10225 1.26642 1.50030 0.85097 0.79138 0.77340 0.77555 1.17356 1.20628 1.20637 0.90907 0.89366 0.92821 0.82702 0.82413 0.81860 0.85554 0.85524 0.74975 0.99251 0.99260 0.92262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.30 9.79 71.23 0.70 -1.61 16 2 C -0.12 -2.62 5.89 -19.78 -0.12 -2.73 16 3 C -0.07 -1.34 9.48 22.28 0.21 -1.13 16 4 C -0.08 -1.36 6.32 22.33 0.14 -1.22 16 5 Cl -0.07 -1.10 28.95 -2.72 -0.08 -1.18 16 6 C -0.07 -1.17 9.82 22.28 0.22 -0.95 16 7 C -0.19 -3.37 9.04 22.36 0.20 -3.17 16 8 C 0.11 2.71 6.66 22.50 0.15 2.86 16 9 O -0.31 -9.22 8.71 -73.63 -0.64 -9.86 16 10 C 0.05 1.25 5.22 71.24 0.37 1.63 16 11 C 0.50 19.16 7.91 87.66 0.69 19.85 16 12 O -0.59 -29.77 16.50 16.02 0.26 -29.50 16 13 N -0.70 -27.61 5.55 -466.80 -2.59 -30.20 16 14 C 0.27 14.16 5.43 85.63 0.46 14.63 16 15 C -0.55 -29.03 9.28 25.60 0.24 -28.79 16 16 H 0.09 4.11 7.60 -2.91 -0.02 4.08 16 17 C 0.00 0.12 5.46 84.65 0.46 0.58 16 18 N -0.93 -55.47 13.29 21.45 0.28 -55.19 16 19 Si 0.99 41.23 29.54 68.60 2.03 43.26 16 20 H -0.25 -9.54 7.11 99.48 0.71 -8.83 16 21 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 22 H -0.28 -11.62 7.11 99.48 0.71 -10.92 16 23 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.09 1.44 8.09 -2.38 -0.02 1.42 16 25 H 0.05 1.44 7.53 -2.39 -0.02 1.42 16 26 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 27 H 0.16 1.73 8.06 -2.91 -0.02 1.70 16 28 H 0.16 1.94 6.30 -2.91 -0.02 1.92 16 29 H 0.13 2.22 7.66 -2.39 -0.02 2.20 16 30 H 0.13 2.23 7.66 -2.39 -0.02 2.21 16 31 H 0.41 12.60 8.32 -92.71 -0.77 11.83 16 32 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 33 H -0.01 -0.64 8.14 -2.38 -0.02 -0.66 16 34 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 Total: -1.00 -73.47 316.15 3.36 -70.11 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: 0.36 Total: 12.62 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: 3.73 Total: -0.07 kcal Atomic # 7 Polarization: -83.08 SS G_CDS: -2.30 Total: -85.38 kcal Atomic # 8 Polarization: -38.99 SS G_CDS: -0.38 Total: -39.37 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.26 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -0.08 Total: -1.18 kcal Total: -73.47 3.36 -70.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343900545.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.986 kcal (2) G-P(sol) polarization free energy of solvation -73.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds