Wall clock time and date at job start Tue Mar 31 2020 05:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38279 * 120.03568 * 2 1 4 4 Cl 1.73599 * 119.98504 * 359.97438 * 3 2 1 5 5 C 1.38362 * 120.02725 * 180.25403 * 3 2 1 6 6 C 1.38269 * 120.09983 * 359.44711 * 5 3 2 7 7 C 1.38134 * 120.06508 * 0.55309 * 6 5 3 8 8 C 1.38682 * 120.02962 * 179.97438 * 2 1 3 9 9 O 1.35901 * 120.05142 * 359.97438 * 8 2 1 10 10 C 1.42900 * 116.99754 * 179.97438 * 9 8 2 11 11 C 1.50704 * 109.46799 * 180.02562 * 10 9 8 12 12 O 1.21287 * 120.00145 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99839 * 180.02562 * 11 10 9 14 14 C 1.46503 * 120.00284 * 359.97438 * 13 11 10 15 15 C 1.37101 * 119.99916 * 180.02562 * 13 11 10 16 16 H 1.08001 * 120.00417 * 24.38418 * 15 13 11 17 17 C 1.38950 * 119.99819 * 204.39169 * 15 13 11 18 18 N 1.31409 * 120.00075 * 12.65206 * 17 15 13 19 19 Si 1.86807 * 119.99844 * 192.65450 * 17 15 13 20 20 H 1.48497 * 109.47202 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47038 * 119.99998 * 19 17 15 22 22 H 1.48501 * 109.46746 * 239.99710 * 19 17 15 23 23 H 1.08998 * 109.47137 * 89.99420 * 1 2 3 24 24 H 1.08992 * 109.47153 * 210.00173 * 1 2 3 25 25 H 1.09000 * 109.46933 * 329.99895 * 1 2 3 26 26 H 1.08004 * 119.95142 * 179.72403 * 5 3 2 27 27 H 1.07994 * 119.96983 * 180.25192 * 6 5 3 28 28 H 1.07996 * 120.01067 * 179.70048 * 7 6 5 29 29 H 1.08999 * 109.47810 * 300.00245 * 10 9 8 30 30 H 1.09001 * 109.46850 * 60.01083 * 10 9 8 31 31 H 1.09002 * 109.46572 * 85.87135 * 14 13 11 32 32 H 1.09004 * 109.47135 * 205.86704 * 14 13 11 33 33 H 1.08998 * 109.47172 * 325.87268 * 14 13 11 34 34 H 0.97004 * 120.00027 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1992 1.1971 0.0000 4 17 1.3318 2.7008 -0.0007 5 6 3.5828 1.1969 -0.0053 6 6 4.2761 0.0006 0.0009 7 6 3.5887 -1.1976 0.0009 8 6 2.2011 -1.2007 0.0005 9 8 1.5233 -2.3786 0.0016 10 6 2.3033 -3.5759 0.0015 11 6 1.3869 -4.7723 0.0021 12 8 0.1843 -4.6151 0.0021 13 7 1.9039 -6.0170 0.0027 14 6 3.3565 -6.2069 0.0022 15 6 1.0702 -7.1055 0.0027 16 1 0.0657 -7.0164 -0.3838 17 6 1.5177 -8.3232 0.5002 18 7 2.6336 -8.3803 1.1919 19 14 0.5331 -9.8793 0.1857 20 1 -0.6748 -9.5479 -0.6121 21 1 1.3697 -10.8516 -0.5626 22 1 0.1215 -10.4750 1.4821 23 1 -0.3633 0.0001 -1.0276 24 1 -0.3633 -0.8899 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 4.1222 2.1326 -0.0098 27 1 5.3560 0.0029 0.0009 28 1 4.1311 -2.1315 0.0009 29 1 2.9315 -3.6003 -0.8889 30 1 2.9327 -3.5995 0.8911 31 1 3.7268 -6.1800 1.0270 32 1 3.5967 -7.1713 -0.4457 33 1 3.8268 -5.4109 -0.5751 34 1 2.9462 -9.2305 1.5389 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346202430.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:52 Heat of formation + Delta-G solvation = -64.043527 kcal Electronic energy + Delta-G solvation = -19524.266715 eV Core-core repulsion = 16255.146684 eV Total energy + Delta-G solvation = -3269.120032 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.48659 -40.25573 -38.59710 -37.24970 -36.65421 -33.92684 -33.68430 -31.09292 -29.84191 -28.03943 -27.70931 -26.17704 -23.45049 -22.70127 -20.94591 -19.29805 -18.91517 -17.84162 -17.42345 -17.24667 -16.66033 -16.47715 -15.89010 -15.81682 -15.68104 -14.81181 -14.71969 -14.27349 -13.86218 -13.63293 -13.42052 -13.36706 -13.32200 -13.16672 -12.75070 -12.67353 -12.47166 -12.40202 -12.26303 -12.12047 -11.83474 -11.71995 -11.04902 -10.43692 -9.73901 -9.70532 -9.21710 -8.39450 -6.05163 0.09510 0.31805 1.01454 1.34520 1.41267 1.54399 1.87077 1.93488 2.34194 2.59080 3.02961 3.15173 3.67855 3.81253 3.89793 3.98890 4.08738 4.17415 4.27092 4.40297 4.60107 4.63076 4.67833 4.69267 4.99249 5.18708 5.23721 5.29422 5.33841 5.35288 5.41675 5.59127 6.01758 6.28707 6.46520 7.10518 7.35238 7.91529 8.63782 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.041098 B = 0.003427 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.132656 B = 8167.928721 C = 8766.588148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.132 4.132 3 C -0.009 4.009 4 Cl -0.058 7.058 5 C -0.145 4.145 6 C -0.064 4.064 7 C -0.205 4.205 8 C 0.117 3.883 9 O -0.312 6.312 10 C 0.067 3.933 11 C 0.432 3.568 12 O -0.623 6.623 13 N -0.453 5.453 14 C 0.112 3.888 15 C -0.348 4.348 16 H 0.070 0.930 17 C 0.003 3.997 18 N -0.891 5.891 19 Si 0.990 3.010 20 H -0.275 1.275 21 H -0.262 1.262 22 H -0.275 1.275 23 H 0.072 0.928 24 H 0.053 0.947 25 H 0.082 0.918 26 H 0.160 0.840 27 H 0.172 0.828 28 H 0.153 0.847 29 H 0.110 0.890 30 H 0.104 0.896 31 H 0.050 0.950 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.610 16.293 -2.397 18.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.133 4.133 3 C -0.036 4.036 4 Cl -0.029 7.029 5 C -0.164 4.164 6 C -0.082 4.082 7 C -0.224 4.224 8 C 0.071 3.929 9 O -0.225 6.225 10 C -0.011 4.011 11 C 0.221 3.779 12 O -0.509 6.509 13 N -0.173 5.173 14 C -0.030 4.030 15 C -0.476 4.476 16 H 0.088 0.912 17 C -0.200 4.200 18 N -0.529 5.529 19 Si 0.813 3.187 20 H -0.200 1.200 21 H -0.186 1.186 22 H -0.201 1.201 23 H 0.090 0.910 24 H 0.072 0.928 25 H 0.101 0.899 26 H 0.178 0.822 27 H 0.190 0.810 28 H 0.170 0.830 29 H 0.128 0.872 30 H 0.122 0.878 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.882 16.295 -2.301 18.247 hybrid contribution -0.625 -0.986 0.078 1.170 sum 7.257 15.309 -2.223 17.088 Atomic orbital electron populations 1.20623 0.90121 1.02820 1.02744 1.19147 0.97359 0.89670 1.07135 1.20602 0.92927 0.85809 1.04249 1.98350 1.77255 1.30504 1.96765 1.21287 0.90962 1.00651 1.03452 1.21287 1.01746 0.89849 0.95284 1.21706 0.91783 1.01746 1.07177 1.19038 0.91610 0.85023 0.97232 1.86143 1.35860 1.12196 1.88313 1.22445 0.92724 0.81281 1.04659 1.20529 0.88918 0.84886 0.83595 1.90516 1.17738 1.86110 1.56564 1.43737 1.07397 1.03594 1.62572 1.21602 0.78759 1.01475 1.01186 1.19643 0.98054 0.88349 1.41504 0.91219 1.26079 0.97981 1.01872 0.94036 1.70039 1.22714 1.27728 1.32429 0.84930 0.78228 0.77232 0.78267 1.19991 1.18633 1.20098 0.90968 0.92812 0.89928 0.82242 0.81046 0.82976 0.87207 0.87802 0.93165 0.91858 0.90840 0.91416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.11 9.39 71.24 0.67 -2.44 16 2 C -0.13 -3.80 5.90 -19.75 -0.12 -3.92 16 3 C -0.01 -0.21 6.31 22.31 0.14 -0.07 16 4 Cl -0.06 -1.20 27.29 -2.72 -0.07 -1.27 16 5 C -0.14 -2.66 9.83 22.31 0.22 -2.44 16 6 C -0.06 -1.10 10.04 22.25 0.22 -0.87 16 7 C -0.21 -4.69 9.04 22.37 0.20 -4.49 16 8 C 0.12 3.58 6.66 22.50 0.15 3.73 16 9 O -0.31 -12.02 8.71 -73.39 -0.64 -12.66 16 10 C 0.07 2.39 3.83 71.24 0.27 2.67 16 11 C 0.43 21.58 7.70 87.66 0.68 22.26 16 12 O -0.62 -37.31 16.21 15.99 0.26 -37.05 16 13 N -0.45 -23.04 3.01 -658.88 -1.98 -25.03 16 14 C 0.11 4.59 8.44 127.77 1.08 5.67 16 15 C -0.35 -19.71 9.24 84.04 0.78 -18.94 16 16 H 0.07 4.28 7.45 -2.91 -0.02 4.25 16 17 C 0.00 0.15 5.04 84.93 0.43 0.58 16 18 N -0.89 -45.76 10.84 21.66 0.23 -45.52 16 19 Si 0.99 41.78 29.57 68.60 2.03 43.81 16 20 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 21 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 22 H -0.28 -11.37 7.11 99.48 0.71 -10.66 16 23 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 24 H 0.05 1.84 7.53 -2.39 -0.02 1.82 16 25 H 0.08 2.07 6.90 -2.39 -0.02 2.05 16 26 H 0.16 2.02 8.06 -2.91 -0.02 1.99 16 27 H 0.17 1.64 8.06 -2.91 -0.02 1.61 16 28 H 0.15 2.87 6.30 -2.91 -0.02 2.85 16 29 H 0.11 3.15 6.93 -2.39 -0.02 3.13 16 30 H 0.10 3.19 7.63 -2.39 -0.02 3.17 16 31 H 0.05 2.08 7.83 -2.39 -0.02 2.06 16 32 H 0.06 2.77 6.80 -2.38 -0.02 2.75 16 33 H 0.07 2.24 6.61 -2.39 -0.02 2.22 16 34 H 0.28 13.18 8.31 -92.71 -0.77 12.41 16 Total: -1.00 -70.72 304.92 5.67 -65.05 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: 1.12 Total: 10.94 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: 4.72 Total: 1.73 kcal Atomic # 7 Polarization: -68.80 SS G_CDS: -1.75 Total: -70.55 kcal Atomic # 8 Polarization: -49.33 SS G_CDS: -0.38 Total: -49.71 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -0.07 Total: -1.27 kcal Total: -70.72 5.67 -65.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346202430.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.008 kcal (2) G-P(sol) polarization free energy of solvation -70.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds