Wall clock time and date at job start Tue Mar 31 2020 05:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99602 * 2 1 4 4 H 1.48495 * 109.47674 * 269.99763 * 3 2 1 5 5 H 1.48501 * 109.47023 * 30.00558 * 3 2 1 6 6 H 1.48506 * 109.46854 * 149.99944 * 3 2 1 7 7 C 1.37873 * 120.00134 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00068 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00049 * 180.02562 * 7 2 1 10 10 S 1.81398 * 109.47379 * 179.97438 * 9 7 2 11 11 C 1.81398 * 103.00006 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47596 * 304.99837 * 11 10 9 13 13 C 1.53011 * 109.46913 * 185.00261 * 11 10 9 14 14 C 1.50697 * 109.47155 * 64.99967 * 13 11 10 15 15 C 1.38244 * 119.97201 * 89.99868 * 14 13 11 16 16 C 1.38205 * 120.02298 * 179.97438 * 15 14 13 17 17 C 1.38459 * 119.97412 * 0.24026 * 16 15 14 18 18 F 1.35099 * 120.02759 * 179.72396 * 17 16 15 19 19 C 1.38466 * 119.94836 * 359.48301 * 17 16 15 20 20 C 1.38196 * 119.97140 * 0.53984 * 19 17 16 21 21 C 1.50699 * 109.47265 * 65.00504 * 11 10 9 22 22 N 1.34771 * 120.00335 * 69.99934 * 21 11 10 23 23 O 1.21282 * 119.99526 * 249.99698 * 21 11 10 24 24 H 0.97000 * 119.99854 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.47421 * 59.99534 * 9 7 2 26 26 H 1.08999 * 109.47367 * 299.99710 * 9 7 2 27 27 H 1.08994 * 109.46802 * 305.00034 * 13 11 10 28 28 H 1.09000 * 109.46596 * 185.00075 * 13 11 10 29 29 H 1.07999 * 119.98898 * 359.97438 * 15 14 13 30 30 H 1.08002 * 120.00949 * 179.97438 * 16 15 14 31 31 H 1.07997 * 120.00962 * 180.25357 * 19 17 16 32 32 H 1.07999 * 119.98560 * 179.70313 * 20 19 17 33 33 H 0.97005 * 119.99816 * 359.97438 * 22 21 11 34 34 H 0.97003 * 120.00011 * 180.02562 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0466 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 0.0000 10 16 4.1163 -2.9042 -0.0001 11 6 5.9187 -2.6996 -0.0001 12 1 6.2133 -2.0729 -0.8419 13 6 6.5875 -4.0701 -0.1261 14 6 6.2543 -4.6703 -1.4676 15 6 7.0728 -4.4279 -2.5551 16 6 6.7685 -4.9783 -3.7858 17 6 5.6408 -5.7685 -3.9304 18 9 5.3393 -6.3024 -5.1343 19 6 4.8249 -6.0151 -2.8392 20 6 5.1310 -5.4634 -1.6097 21 6 6.3502 -2.0466 1.2876 22 7 6.2750 -2.7288 2.4475 23 8 6.7653 -0.9070 1.2802 24 1 -0.4850 0.8401 0.0004 25 1 3.8746 -0.6807 0.8905 26 1 3.8753 -0.6796 -0.8894 27 1 6.2245 -4.7256 0.6655 28 1 7.6679 -3.9566 -0.0370 29 1 7.9502 -3.8084 -2.4429 30 1 7.4078 -4.7885 -4.6353 31 1 3.9473 -6.6347 -2.9500 32 1 4.4922 -5.6517 -0.7595 33 1 5.9428 -3.6402 2.4534 34 1 6.5524 -2.3083 3.2764 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413009612.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:42 Heat of formation + Delta-G solvation = -74.759625 kcal Electronic energy + Delta-G solvation = -19301.126544 eV Core-core repulsion = 16045.958323 eV Total energy + Delta-G solvation = -3255.168221 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.078 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.87647 -39.64393 -38.89142 -34.44214 -33.08753 -33.02724 -31.14288 -29.58108 -29.18758 -24.92580 -23.09352 -22.53932 -21.37089 -20.47448 -17.75359 -17.56526 -17.12573 -16.77038 -16.29704 -15.80071 -15.56959 -15.38771 -14.52232 -14.21584 -14.11328 -13.90901 -13.62238 -13.51299 -13.15191 -12.89157 -12.58082 -12.41580 -11.89272 -11.80842 -11.65209 -10.99712 -10.82119 -10.50931 -10.10214 -10.06848 -9.66059 -9.57903 -9.15215 -9.03045 -8.73626 -8.55777 -7.02064 -6.21693 -4.24788 1.10561 1.24910 1.93724 2.89120 3.22925 3.30172 3.37572 3.49382 3.52561 3.71718 4.26589 4.31034 4.53118 4.65244 4.84128 4.89332 5.03707 5.09232 5.10819 5.25734 5.37572 5.54394 5.76167 5.91373 6.00313 6.11323 6.24386 6.50148 6.58354 6.65786 6.85417 6.88564 7.37737 7.40228 8.24293 8.34012 8.78224 9.34592 10.89819 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.014874 B = 0.005497 C = 0.004480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.020372 B = 5092.497175 C = 6248.967972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.083 3.917 3 Si 0.872 3.128 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.262 1.262 7 C -0.516 4.516 8 H 0.084 0.916 9 C 0.042 3.958 10 S -0.218 6.218 11 C -0.099 4.099 12 H 0.113 0.887 13 C -0.053 4.053 14 C -0.091 4.091 15 C -0.086 4.086 16 C -0.157 4.157 17 C 0.094 3.906 18 F -0.144 7.144 19 C -0.151 4.151 20 C -0.058 4.058 21 C 0.532 3.468 22 N -0.845 5.845 23 O -0.544 6.544 24 H 0.268 0.732 25 H 0.037 0.963 26 H 0.033 0.967 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.130 0.870 30 H 0.132 0.868 31 H 0.135 0.865 32 H 0.137 0.863 33 H 0.403 0.597 34 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.174 -12.356 -0.986 19.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.122 4.122 3 Si 0.698 3.302 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.555 4.555 8 H 0.102 0.898 9 C -0.106 4.106 10 S 0.010 5.990 11 C -0.231 4.231 12 H 0.132 0.868 13 C -0.091 4.091 14 C -0.091 4.091 15 C -0.104 4.104 16 C -0.176 4.176 17 C 0.075 3.925 18 F -0.123 7.123 19 C -0.170 4.170 20 C -0.076 4.076 21 C 0.313 3.687 22 N -0.409 5.409 23 O -0.421 6.421 24 H 0.078 0.922 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.148 0.852 30 H 0.150 0.850 31 H 0.153 0.847 32 H 0.155 0.845 33 H 0.233 0.767 34 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 14.645 -12.468 -1.249 19.274 hybrid contribution 0.734 1.833 0.008 1.974 sum 15.379 -10.636 -1.241 18.740 Atomic orbital electron populations 1.69858 1.06117 1.27388 1.49319 1.24810 0.94721 0.98706 0.93919 0.86882 0.80628 0.83599 0.79076 1.19769 1.20706 1.18671 1.20396 0.86642 0.95277 1.53160 0.89813 1.21534 1.01141 0.88286 0.99630 1.86671 0.95885 1.19053 1.97353 1.23527 1.00658 1.00457 0.98412 0.86847 1.20348 1.00520 0.93014 0.95225 1.19682 0.95876 0.98393 0.95191 1.20859 0.99537 0.98515 0.91477 1.21039 0.97482 1.00065 0.99041 1.17744 0.96346 0.97567 0.80821 1.91483 1.93074 1.84533 1.43183 1.21138 1.00541 1.03050 0.92248 1.20944 0.95136 0.94297 0.97217 1.20382 0.76329 0.86051 0.85908 1.43652 1.68992 1.18904 1.09303 1.90758 1.46253 1.17945 1.87169 0.92162 0.94506 0.94897 0.89597 0.89569 0.85243 0.85046 0.84719 0.84494 0.76746 0.76877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.85 13.96 55.43 0.77 -26.08 16 2 C 0.08 2.40 5.47 -17.82 -0.10 2.30 16 3 Si 0.87 21.70 27.47 -169.99 -4.67 17.03 16 4 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.26 -6.52 6.54 56.52 0.37 -6.15 16 7 C -0.52 -14.57 9.68 -34.44 -0.33 -14.91 16 8 H 0.08 2.55 7.96 -52.48 -0.42 2.13 16 9 C 0.04 1.02 4.55 36.00 0.16 1.18 16 10 S -0.22 -4.07 19.27 -107.50 -2.07 -6.14 16 11 C -0.10 -1.47 2.62 -27.88 -0.07 -1.54 16 12 H 0.11 1.81 8.13 -51.92 -0.42 1.38 16 13 C -0.05 -0.55 4.57 -27.88 -0.13 -0.68 16 14 C -0.09 -1.04 4.85 -104.62 -0.51 -1.55 16 15 C -0.09 -0.92 9.70 -39.59 -0.38 -1.31 16 16 C -0.16 -1.76 10.03 -39.51 -0.40 -2.16 16 17 C 0.09 1.18 7.30 -39.42 -0.29 0.89 16 18 F -0.14 -1.89 17.27 2.25 0.04 -1.85 16 19 C -0.15 -1.82 10.03 -39.51 -0.40 -2.22 16 20 C -0.06 -0.69 8.56 -39.59 -0.34 -1.03 16 21 C 0.53 8.36 6.55 -10.99 -0.07 8.29 16 22 N -0.84 -9.54 8.72 31.22 0.27 -9.27 16 23 O -0.54 -10.96 17.93 5.56 0.10 -10.86 16 24 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 25 H 0.04 0.93 7.06 -51.92 -0.37 0.56 16 26 H 0.03 0.81 7.57 -51.92 -0.39 0.41 16 27 H 0.09 0.74 7.20 -51.93 -0.37 0.37 16 28 H 0.09 0.74 8.08 -51.93 -0.42 0.32 16 29 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 30 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 31 H 0.13 1.44 8.06 -52.49 -0.42 1.01 16 32 H 0.14 1.55 7.77 -52.49 -0.41 1.14 16 33 H 0.40 3.51 7.79 -40.82 -0.32 3.19 16 34 H 0.40 3.96 8.93 -40.82 -0.36 3.59 16 LS Contribution 312.23 15.07 4.71 4.71 Total: -1.00 -33.59 312.23 -7.62 -41.21 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -3.92 Total: 3.97 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: -2.85 Total: -12.72 kcal Atomic # 7 Polarization: -36.40 SS G_CDS: 1.05 Total: -35.35 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.10 Total: -10.86 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.04 Total: -1.85 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Atomic # 16 Polarization: -4.07 SS G_CDS: -2.07 Total: -6.14 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -33.59 -7.62 -41.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413009612.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.548 kcal (2) G-P(sol) polarization free energy of solvation -33.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds