Wall clock time and date at job start Tue Mar 31 2020 05:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00156 * 2 1 4 4 H 1.48501 * 109.47047 * 270.00222 * 3 2 1 5 5 H 1.48502 * 109.47101 * 29.99953 * 3 2 1 6 6 H 1.48503 * 109.47303 * 149.99979 * 3 2 1 7 7 C 1.37882 * 120.00130 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00166 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99985 * 0.02562 * 7 2 1 10 10 S 1.81391 * 109.47127 * 179.97438 * 9 7 2 11 11 C 1.81399 * 103.00251 * 179.97438 * 10 9 7 12 12 C 1.50696 * 109.47415 * 179.97438 * 11 10 9 13 13 O 1.21284 * 120.00096 * 0.02562 * 12 11 10 14 14 N 1.34774 * 119.99838 * 180.02562 * 12 11 10 15 15 C 1.46506 * 120.00072 * 180.02562 * 14 12 11 16 16 C 1.50703 * 109.47289 * 179.97438 * 15 14 12 17 17 C 1.38218 * 120.01072 * 105.00098 * 16 15 14 18 18 C 1.38214 * 120.02377 * 179.97438 * 17 16 15 19 19 C 1.38265 * 120.05476 * 0.02562 * 18 17 16 20 20 C 1.38180 * 120.02127 * 0.02562 * 19 18 17 21 21 C 1.38437 * 120.01312 * 284.72220 * 16 15 14 22 22 F 1.35097 * 120.02358 * 0.02562 * 21 16 15 23 23 H 0.97002 * 120.00383 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.46982 * 60.00092 * 9 7 2 25 25 H 1.08997 * 109.46634 * 299.99818 * 9 7 2 26 26 H 1.09004 * 109.46820 * 59.99996 * 11 10 9 27 27 H 1.09001 * 109.47370 * 300.00473 * 11 10 9 28 28 H 0.97001 * 120.00676 * 359.97438 * 14 12 11 29 29 H 1.09001 * 109.47060 * 300.00359 * 15 14 12 30 30 H 1.09004 * 109.47073 * 59.99848 * 15 14 12 31 31 H 1.08006 * 119.98901 * 359.97438 * 17 16 15 32 32 H 1.07999 * 119.97625 * 179.97438 * 18 17 16 33 33 H 1.08000 * 119.99394 * 179.97438 * 19 18 17 34 34 H 1.08004 * 120.00951 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 16 2.4298 -3.8779 -0.0029 11 6 1.3516 -5.3367 -0.0034 12 6 2.1956 -6.5852 -0.0051 13 8 3.4054 -6.4994 -0.0054 14 7 1.6060 -7.7971 -0.0063 15 6 2.4264 -9.0109 -0.0074 16 6 1.5306 -10.2228 -0.0079 17 6 1.3684 -10.9621 -1.1644 18 6 0.5473 -12.0739 -1.1651 19 6 -0.1132 -12.4476 -0.0093 20 6 0.0466 -11.7094 1.1478 21 6 0.8743 -10.5993 1.1514 22 9 1.0362 -9.8804 2.2837 23 1 -0.4851 0.8400 -0.0004 24 1 0.6247 -2.5564 -0.8920 25 1 0.6241 -2.5575 0.8880 26 1 0.7221 -5.3229 -0.8933 27 1 0.7227 -5.3240 0.8867 28 1 0.6384 -7.8658 -0.0057 29 1 3.0557 -9.0233 -0.8973 30 1 3.0555 -9.0250 0.8827 31 1 1.8835 -10.6709 -2.0680 32 1 0.4209 -12.6508 -2.0693 33 1 -0.7548 -13.3163 -0.0111 34 1 -0.4697 -12.0013 2.0503 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413009662.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:44 Heat of formation + Delta-G solvation = -65.074671 kcal Electronic energy + Delta-G solvation = -18396.913850 eV Core-core repulsion = 15142.165600 eV Total energy + Delta-G solvation = -3254.748250 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.078 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.22276 -39.86359 -39.01267 -35.07585 -33.11528 -32.02892 -30.95115 -29.61336 -28.45741 -26.07872 -23.23637 -23.06464 -21.97295 -20.60944 -18.07427 -17.21800 -16.85771 -16.55034 -16.33838 -15.88573 -15.63627 -15.36971 -14.97559 -14.57768 -14.29143 -13.82316 -13.64346 -13.36080 -13.23483 -12.72976 -12.48298 -12.44781 -12.25998 -12.03074 -11.76699 -11.42729 -10.85186 -10.68853 -10.02675 -9.90582 -9.57032 -9.41786 -9.18748 -9.06637 -8.74078 -8.58749 -6.61068 -6.17124 -4.20643 0.61371 0.73784 2.38137 2.79531 3.02842 3.29176 3.34443 3.40772 3.48432 3.83419 3.89125 4.13474 4.29303 4.38637 4.49952 4.74720 4.85382 4.97664 5.19953 5.20330 5.33442 5.43099 5.52725 5.59763 5.64140 5.69339 5.87717 5.93022 6.31020 6.41817 7.10955 7.12132 7.43355 7.78346 8.04325 8.30694 8.81607 9.42262 10.94488 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.042064 B = 0.002656 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.490604 B =10539.321761 C =10662.875300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.065 3.935 3 Si 0.907 3.093 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.509 4.509 8 H 0.068 0.932 9 C 0.074 3.926 10 S -0.235 6.235 11 C -0.131 4.131 12 C 0.534 3.466 13 O -0.513 6.513 14 N -0.731 5.731 15 C 0.165 3.835 16 C -0.141 4.141 17 C -0.072 4.072 18 C -0.133 4.133 19 C -0.085 4.085 20 C -0.157 4.157 21 C 0.115 3.885 22 F -0.131 7.131 23 H 0.265 0.735 24 H 0.035 0.965 25 H 0.035 0.965 26 H 0.101 0.899 27 H 0.101 0.899 28 H 0.400 0.600 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.136 0.864 32 H 0.132 0.868 33 H 0.133 0.867 34 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.256 -26.644 -1.163 26.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.139 4.139 3 Si 0.734 3.266 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.549 4.549 8 H 0.086 0.914 9 C -0.073 4.073 10 S -0.009 6.009 11 C -0.281 4.281 12 C 0.320 3.680 13 O -0.387 6.387 14 N -0.385 5.385 15 C 0.041 3.959 16 C -0.142 4.142 17 C -0.090 4.090 18 C -0.151 4.151 19 C -0.104 4.104 20 C -0.176 4.176 21 C 0.095 3.905 22 F -0.110 7.110 23 H 0.075 0.925 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.119 0.881 27 H 0.119 0.881 28 H 0.234 0.766 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.154 0.846 32 H 0.150 0.850 33 H 0.151 0.849 34 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.390 -26.399 -1.109 26.459 hybrid contribution -1.653 0.822 0.245 1.862 sum -3.044 -25.577 -0.864 25.772 Atomic orbital electron populations 1.69952 1.06148 1.27291 1.49886 1.24961 0.94980 0.99278 0.94667 0.86342 0.79789 0.82133 0.78356 1.20337 1.21007 1.19484 1.20654 0.93540 0.88630 1.52043 0.91390 1.21170 0.94485 0.91638 1.00056 1.87235 1.17388 0.98315 1.97982 1.23355 1.02414 0.96218 1.06149 1.20016 0.88659 0.83792 0.75568 1.90732 1.14105 1.86467 1.47436 1.45952 1.10183 1.04804 1.77608 1.20052 0.91834 0.80264 1.03743 1.20023 1.01478 0.99459 0.93255 1.21065 0.96990 0.94033 0.96946 1.21250 0.97634 0.97433 0.98765 1.21097 0.98324 0.98995 0.91942 1.21208 1.00437 0.95513 1.00451 1.17645 0.98433 0.91985 0.82399 1.91552 1.94009 1.76747 1.48660 0.92548 0.94648 0.94623 0.88069 0.88051 0.76575 0.89988 0.90268 0.84588 0.85038 0.84875 0.84518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.20 13.29 55.43 0.74 -25.46 16 2 C 0.06 1.84 5.46 -17.82 -0.10 1.74 16 3 Si 0.91 21.72 29.54 -169.99 -5.02 16.69 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 7 C -0.51 -14.67 9.13 -34.44 -0.31 -14.98 16 8 H 0.07 1.97 7.71 -52.49 -0.40 1.57 16 9 C 0.07 1.94 5.70 36.01 0.21 2.15 16 10 S -0.23 -5.45 20.79 -107.50 -2.24 -7.69 16 11 C -0.13 -2.24 6.42 36.00 0.23 -2.01 16 12 C 0.53 8.83 7.85 -10.99 -0.09 8.74 16 13 O -0.51 -10.53 15.87 5.55 0.09 -10.44 16 14 N -0.73 -8.89 5.55 -61.47 -0.34 -9.23 16 15 C 0.16 1.79 5.49 -5.19 -0.03 1.76 16 16 C -0.14 -1.24 5.25 -104.55 -0.55 -1.79 16 17 C -0.07 -0.49 9.67 -39.60 -0.38 -0.88 16 18 C -0.13 -0.75 10.04 -39.58 -0.40 -1.14 16 19 C -0.09 -0.48 10.04 -39.59 -0.40 -0.87 16 20 C -0.16 -1.12 10.03 -39.52 -0.40 -1.51 16 21 C 0.12 1.06 7.25 -39.42 -0.29 0.78 16 22 F -0.13 -1.48 16.75 2.25 0.04 -1.44 16 23 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 24 H 0.04 0.95 8.14 -51.92 -0.42 0.53 16 25 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.10 1.54 8.14 -51.92 -0.42 1.12 16 27 H 0.10 1.58 8.14 -51.92 -0.42 1.16 16 28 H 0.40 3.96 8.46 -40.82 -0.35 3.61 16 29 H 0.08 0.86 7.95 -51.93 -0.41 0.45 16 30 H 0.08 0.96 8.07 -51.93 -0.42 0.55 16 31 H 0.14 0.74 8.00 -52.48 -0.42 0.32 16 32 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16 33 H 0.13 0.42 8.06 -52.49 -0.42 0.00 16 34 H 0.14 0.76 8.06 -52.48 -0.42 0.34 16 LS Contribution 320.69 15.07 4.83 4.83 Total: -1.00 -33.52 320.69 -8.50 -42.02 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: -4.10 Total: -1.26 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: -2.50 Total: -8.02 kcal Atomic # 7 Polarization: -35.09 SS G_CDS: 0.40 Total: -34.70 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.09 Total: -10.44 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.04 Total: -1.44 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: -5.45 SS G_CDS: -2.24 Total: -7.69 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.52 -8.50 -42.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413009662.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.054 kcal (2) G-P(sol) polarization free energy of solvation -33.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds