Wall clock time and date at job start Tue Mar 31 2020 05:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38271 * 119.94175 * 2 1 4 4 C 1.38105 * 120.09052 * 180.23343 * 3 2 1 5 5 C 1.38903 * 119.98032 * 359.49855 * 4 3 2 6 6 N 1.39922 * 120.05858 * 180.23059 * 5 4 3 7 7 C 1.34774 * 120.00478 * 144.90867 * 6 5 4 8 8 O 1.21289 * 119.99694 * 4.62902 * 7 6 5 9 9 C 1.50701 * 120.00175 * 184.62157 * 7 6 5 10 10 S 1.81404 * 109.46913 * 180.02562 * 9 7 6 11 11 C 1.81402 * 102.99567 * 180.02562 * 10 9 7 12 12 C 1.50703 * 109.46841 * 180.02562 * 11 10 9 13 13 H 1.08000 * 119.99960 * 0.02562 * 12 11 10 14 14 C 1.37874 * 120.00104 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99668 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99993 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47088 * 60.00323 * 16 14 12 18 18 H 1.48503 * 109.47084 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47391 * 299.99842 * 16 14 12 20 20 C 1.38812 * 119.88699 * 0.25291 * 5 4 3 21 21 C 1.38352 * 119.90727 * 359.97438 * 20 5 4 22 22 F 1.35095 * 119.99413 * 180.02562 * 21 20 5 23 23 H 1.09002 * 109.47130 * 270.26863 * 1 2 3 24 24 H 1.09002 * 109.47082 * 30.26623 * 1 2 3 25 25 H 1.09001 * 109.47530 * 150.27286 * 1 2 3 26 26 H 1.07997 * 119.95315 * 359.97438 * 3 2 1 27 27 H 1.08000 * 120.00573 * 179.76867 * 4 3 2 28 28 H 0.97008 * 119.99548 * 324.91375 * 6 5 4 29 29 H 1.08997 * 109.47032 * 300.00111 * 9 7 6 30 30 H 1.09000 * 109.46741 * 60.00142 * 9 7 6 31 31 H 1.08999 * 109.47282 * 300.00038 * 11 10 9 32 32 H 1.08998 * 109.46984 * 60.00381 * 11 10 9 33 33 H 0.96996 * 119.99374 * 179.97438 * 15 14 12 34 34 H 1.08007 * 120.04768 * 179.97438 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1982 0.0000 4 6 3.5782 1.2018 -0.0049 5 6 4.2754 0.0004 0.0008 6 7 5.6746 0.0022 0.0007 7 6 6.3498 -0.9488 0.6761 8 8 5.7475 -1.8539 1.2139 9 6 7.8531 -0.8877 0.7630 10 16 8.4606 -2.2972 1.7300 11 6 10.2580 -2.0522 1.7232 12 6 10.9191 -3.1620 2.4993 13 1 10.3182 -3.9373 2.9511 14 6 12.2912 -3.1876 2.6326 15 7 13.0230 -2.2437 2.0820 16 14 13.1107 -4.5636 3.5940 17 1 12.7871 -5.8687 2.9637 18 1 14.5821 -4.3631 3.5886 19 1 12.6144 -4.5533 4.9936 20 6 3.5817 -1.2019 0.0060 21 6 2.1982 -1.2001 0.0061 22 9 1.5213 -2.3692 0.0116 23 1 -0.3633 0.0048 1.0277 24 1 -0.3633 0.8876 -0.5180 25 1 -0.3634 -0.8924 -0.5096 26 1 1.6554 2.1325 -0.0004 27 1 4.1158 2.1384 -0.0086 28 1 6.1587 0.6880 -0.4855 29 1 8.2769 -0.9264 -0.2405 30 1 8.1515 0.0417 1.2480 31 1 10.6220 -2.0610 0.6958 32 1 10.4958 -1.0939 2.1847 33 1 13.9882 -2.2615 2.1761 34 1 4.1213 -2.1376 0.0099 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413009865.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:05 Heat of formation + Delta-G solvation = -63.320759 kcal Electronic energy + Delta-G solvation = -18496.720450 eV Core-core repulsion = 15242.048256 eV Total energy + Delta-G solvation = -3254.672194 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.078 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.00520 -40.59939 -38.59550 -35.15456 -33.16918 -32.19112 -30.78696 -29.76943 -28.52375 -26.37107 -23.39703 -23.13554 -21.97274 -20.73005 -18.47776 -17.38429 -16.57558 -16.34320 -15.96231 -15.77659 -15.74999 -15.37599 -15.06967 -14.42036 -13.98309 -13.79653 -13.63042 -13.47136 -13.06391 -12.72224 -12.55804 -12.35007 -12.24886 -11.94202 -11.90685 -11.60963 -10.86118 -10.76567 -10.37973 -10.08358 -9.89586 -9.61656 -9.00123 -8.84442 -8.63025 -8.30352 -6.71874 -6.22073 -4.26085 0.85893 1.01280 2.18863 2.50844 2.99766 3.28312 3.30896 3.35835 3.38108 3.75707 4.10446 4.34445 4.46001 4.59172 4.73368 4.81112 5.01853 5.15479 5.16742 5.25621 5.31380 5.42692 5.49304 5.63624 5.76112 5.84898 6.01448 6.11753 6.23158 6.75472 7.03490 7.04287 7.14690 7.73031 7.97891 8.01449 8.75823 9.37267 10.89386 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.045392 B = 0.002784 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.694528 B =10053.938369 C =10546.258410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.141 4.141 3 C -0.074 4.074 4 C -0.154 4.154 5 C 0.177 3.823 6 N -0.677 5.677 7 C 0.532 3.468 8 O -0.490 6.490 9 C -0.132 4.132 10 S -0.232 6.232 11 C 0.075 3.925 12 C -0.512 4.512 13 H 0.068 0.932 14 C 0.066 3.934 15 N -0.894 5.894 16 Si 0.908 3.092 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.273 1.273 20 C -0.155 4.155 21 C 0.117 3.883 22 F -0.135 7.135 23 H 0.072 0.928 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.135 0.865 27 H 0.133 0.867 28 H 0.414 0.586 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.036 0.964 32 H 0.036 0.964 33 H 0.266 0.734 34 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.246 10.615 -7.551 24.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.143 4.143 3 C -0.093 4.093 4 C -0.175 4.175 5 C 0.082 3.918 6 N -0.323 5.323 7 C 0.319 3.681 8 O -0.362 6.362 9 C -0.282 4.282 10 S -0.007 6.007 11 C -0.072 4.072 12 C -0.551 4.551 13 H 0.086 0.914 14 C -0.138 4.138 15 N -0.532 5.532 16 Si 0.734 3.266 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.198 1.198 20 C -0.176 4.176 21 C 0.097 3.903 22 F -0.114 7.114 23 H 0.090 0.910 24 H 0.089 0.911 25 H 0.087 0.913 26 H 0.153 0.847 27 H 0.151 0.849 28 H 0.251 0.749 29 H 0.124 0.876 30 H 0.124 0.876 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -21.026 9.151 -6.686 23.886 hybrid contribution 1.557 0.589 -0.376 1.707 sum -19.469 9.740 -7.062 22.886 Atomic orbital electron populations 1.20683 0.90195 1.03125 1.02711 1.19913 0.97071 0.91900 1.05427 1.20654 0.93163 0.97052 0.98437 1.20954 0.94433 0.96706 1.05376 1.17420 0.82896 0.93072 0.98422 1.43547 1.04144 1.32230 1.52423 1.20282 0.89470 0.81124 0.77248 1.90747 1.69340 1.32545 1.43595 1.23355 0.93559 1.05397 1.05912 1.87315 1.12202 1.32189 1.68946 1.21180 0.84448 1.00940 1.00614 1.20597 0.91389 1.09290 1.33852 0.91430 1.24955 0.96756 0.96483 0.95604 1.69941 1.06095 1.33153 1.44014 0.86392 0.77905 0.81828 0.80433 1.19844 1.21056 1.19843 1.21288 0.92349 1.00041 1.03971 1.17317 0.89470 0.81004 1.02524 1.91487 1.79973 1.46161 1.93753 0.90960 0.91094 0.91312 0.84694 0.84917 0.74930 0.87593 0.87566 0.94549 0.94548 0.92435 0.82843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 9.83 36.01 0.35 -0.46 16 2 C -0.14 -1.40 5.89 -104.52 -0.62 -2.02 16 3 C -0.07 -0.62 9.69 -39.62 -0.38 -1.00 16 4 C -0.15 -1.36 9.96 -39.38 -0.39 -1.76 16 5 C 0.18 2.06 6.30 -83.71 -0.53 1.53 16 6 N -0.68 -7.45 5.34 -9.87 -0.05 -7.50 16 7 C 0.53 8.07 7.69 -10.99 -0.08 7.99 16 8 O -0.49 -9.41 13.30 5.55 0.07 -9.33 16 9 C -0.13 -2.05 6.43 36.01 0.23 -1.81 16 10 S -0.23 -5.13 20.79 -107.50 -2.24 -7.36 16 11 C 0.08 1.91 5.70 36.01 0.21 2.12 16 12 C -0.51 -14.40 9.13 -34.44 -0.31 -14.72 16 13 H 0.07 1.92 7.71 -52.49 -0.40 1.51 16 14 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 15 N -0.89 -25.66 13.29 55.43 0.74 -24.93 16 16 Si 0.91 21.37 29.54 -169.99 -5.02 16.35 16 17 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 20 C -0.16 -2.12 8.68 -39.33 -0.34 -2.46 16 21 C 0.12 1.46 7.24 -39.44 -0.29 1.18 16 22 F -0.14 -1.80 16.47 2.25 0.04 -1.77 16 23 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 25 H 0.07 0.53 7.63 -51.93 -0.40 0.13 16 26 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 27 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 28 H 0.41 2.97 8.82 -40.82 -0.36 2.61 16 29 H 0.11 1.43 8.14 -51.93 -0.42 1.01 16 30 H 0.11 1.45 8.14 -51.92 -0.42 1.02 16 31 H 0.04 0.95 8.14 -51.92 -0.42 0.52 16 32 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 34 H 0.15 2.42 6.23 -52.48 -0.33 2.10 16 LS Contribution 315.65 15.07 4.76 4.76 Total: -1.00 -32.56 315.65 -7.96 -40.51 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: -4.00 Total: -1.05 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: -2.25 Total: -9.67 kcal Atomic # 7 Polarization: -33.11 SS G_CDS: 0.68 Total: -32.43 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.07 Total: -9.33 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.04 Total: -1.77 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -5.13 SS G_CDS: -2.24 Total: -7.36 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.56 -7.96 -40.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413009865.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.807 kcal (2) G-P(sol) polarization free energy of solvation -32.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds