Wall clock time and date at job start Tue Mar 31 2020 05:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35901 * 117.00336 * 2 1 4 4 C 1.38756 * 120.05318 * 0.02562 * 3 2 1 5 5 C 1.38121 * 119.94412 * 179.97438 * 4 3 2 6 6 N 1.47998 * 119.97360 * 179.97438 * 5 4 3 7 7 O 1.21801 * 120.00180 * 0.02562 * 6 5 4 8 8 O 1.21802 * 120.00075 * 179.97438 * 6 5 4 9 9 C 1.38291 * 120.05385 * 359.97352 * 5 4 3 10 10 C 1.38252 * 120.11181 * 0.02562 * 9 5 4 11 11 C 1.38162 * 120.05492 * 359.75080 * 10 9 5 12 12 C 1.50695 * 120.02771 * 180.25464 * 11 10 9 13 13 S 1.81402 * 109.46953 * 270.22982 * 12 11 10 14 14 C 1.81406 * 103.00053 * 180.02562 * 13 12 11 15 15 C 1.50696 * 109.46964 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00163 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99825 * 179.97438 * 15 14 13 18 18 N 1.31519 * 120.00295 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 119.99969 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.46970 * 89.99803 * 19 17 15 21 21 H 1.48498 * 109.47155 * 210.00092 * 19 17 15 22 22 H 1.48500 * 109.47042 * 330.00000 * 19 17 15 23 23 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46938 * 59.99705 * 1 2 3 25 25 H 1.09004 * 109.46926 * 299.99826 * 1 2 3 26 26 H 1.08003 * 120.02662 * 359.95010 * 4 3 2 27 27 H 1.07995 * 119.94226 * 180.02562 * 9 5 4 28 28 H 1.07994 * 119.96887 * 180.02562 * 10 9 5 29 29 H 1.09001 * 109.47117 * 30.22775 * 12 11 10 30 30 H 1.09000 * 109.47173 * 150.22990 * 12 11 10 31 31 H 1.09000 * 109.47029 * 299.99890 * 14 13 12 32 32 H 1.08995 * 109.47016 * 59.99731 * 14 13 12 33 33 H 0.96997 * 119.99977 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9210 3.6047 0.0011 6 7 1.1168 4.8472 0.0011 7 8 -0.0996 4.7853 0.0011 8 8 1.6714 5.9316 0.0020 9 6 3.3021 3.6757 0.0016 10 6 4.0561 2.5169 0.0011 11 6 3.4312 1.2847 0.0052 12 6 4.2537 0.0220 0.0105 13 16 4.5907 -0.4872 -1.6977 14 6 5.5730 -1.9976 -1.4871 15 6 5.9377 -2.5523 -2.8399 16 1 5.6115 -2.0466 -3.7367 17 6 6.6886 -3.7049 -2.9327 18 7 7.0074 -4.1889 -4.1134 19 14 7.2534 -4.5792 -1.3815 20 1 6.2298 -5.5749 -0.9740 21 1 8.5405 -5.2716 -1.6443 22 1 7.4387 -3.5861 -0.2932 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 0.2129 2.3203 0.0001 27 1 3.7924 4.6379 0.0025 28 1 5.1345 2.5750 0.0020 29 1 5.1957 0.2042 0.5278 30 1 3.7043 -0.7674 0.5233 31 1 6.4820 -1.7654 -0.9321 32 1 4.9902 -2.7363 -0.9369 33 1 7.5360 -4.9995 -4.1786 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413013908.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:46 Heat of formation + Delta-G solvation = -19.955650 kcal Electronic energy + Delta-G solvation = -19019.649967 eV Core-core repulsion = 15754.485435 eV Total energy + Delta-G solvation = -3265.164532 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.35586 -40.65463 -37.94387 -36.71425 -33.65195 -33.12382 -30.85766 -29.49258 -28.71723 -27.89946 -25.23370 -22.91618 -22.70660 -21.85384 -19.85671 -18.88729 -17.70079 -17.22652 -17.03458 -16.59452 -16.27457 -16.18315 -15.34185 -14.59335 -14.37343 -14.16752 -13.71595 -13.38858 -12.99934 -12.67220 -12.55405 -12.34882 -12.01439 -11.94699 -11.69387 -11.63345 -11.30350 -11.27797 -10.90323 -10.76045 -10.25852 -9.83334 -9.51608 -9.13470 -8.79473 -8.71194 -6.95570 -6.25776 -4.28857 -0.40592 0.74923 1.11035 1.20871 2.30462 2.82520 3.14292 3.17172 3.21926 3.22782 3.49145 4.11596 4.18006 4.23149 4.36703 4.47322 4.73594 4.85403 4.88451 5.05098 5.05656 5.16409 5.24410 5.39753 5.49778 5.65818 5.85735 5.96461 6.21577 6.46875 6.58134 6.84466 7.32931 7.48165 8.21539 8.76287 9.29207 10.86204 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.030936 B = 0.003581 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.876286 B = 7816.476090 C = 8207.613140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.291 6.291 3 C 0.147 3.853 4 C -0.153 4.153 5 C -0.012 4.012 6 N 0.031 4.969 7 O -0.167 6.167 8 O -0.158 6.158 9 C -0.087 4.087 10 C -0.069 4.069 11 C -0.032 4.032 12 C -0.068 4.068 13 S -0.247 6.247 14 C 0.046 3.954 15 C -0.517 4.517 16 H 0.084 0.916 17 C 0.081 3.919 18 N -0.890 5.890 19 Si 0.879 3.121 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.266 1.266 23 H 0.109 0.891 24 H 0.061 0.939 25 H 0.058 0.942 26 H 0.157 0.843 27 H 0.156 0.844 28 H 0.158 0.842 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.036 0.964 32 H 0.032 0.968 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.220 11.670 12.241 19.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.203 6.203 3 C 0.098 3.902 4 C -0.173 4.173 5 C -0.096 4.096 6 N 0.550 4.450 7 O -0.381 6.381 8 O -0.375 6.375 9 C -0.106 4.106 10 C -0.089 4.089 11 C -0.035 4.035 12 C -0.215 4.215 13 S -0.018 6.018 14 C -0.101 4.101 15 C -0.555 4.555 16 H 0.102 0.898 17 C -0.124 4.124 18 N -0.527 5.527 19 Si 0.705 3.295 20 H -0.198 1.198 21 H -0.207 1.207 22 H -0.191 1.191 23 H 0.127 0.873 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.175 0.825 27 H 0.173 0.827 28 H 0.176 0.824 29 H 0.110 0.890 30 H 0.114 0.886 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.966 11.153 11.195 18.683 hybrid contribution 0.211 -0.746 1.760 1.923 sum -9.755 10.407 12.955 19.270 Atomic orbital electron populations 1.23244 0.77592 1.05018 1.01618 1.86258 1.21858 1.24558 1.87617 1.18496 0.91356 0.84274 0.96076 1.20924 1.02146 0.89721 1.04463 1.20734 0.91529 0.83761 1.13566 1.43604 1.01337 1.02724 0.97347 1.94524 0.95881 1.94065 1.53650 1.94533 1.74221 1.15515 1.53227 1.20942 0.90320 1.01185 0.98191 1.20982 1.01287 0.89189 0.97438 1.19257 0.90412 0.95663 0.98121 1.22243 1.01497 0.96497 1.01292 1.87034 1.72056 1.37031 1.05668 1.21463 0.95658 0.90949 1.02052 1.20441 1.34695 1.09961 0.90440 0.89841 1.24855 0.95018 0.96319 0.96220 1.69861 1.37707 1.22076 1.23042 0.86801 0.78797 0.80258 0.83620 1.19848 1.20731 1.19095 0.87268 0.92012 0.92368 0.82508 0.82659 0.82412 0.88982 0.88611 0.94574 0.94994 0.92124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 101.05 0.99 1.15 16 2 O -0.29 -3.54 9.54 -19.43 -0.19 -3.73 16 3 C 0.15 1.79 6.66 -39.22 -0.26 1.53 16 4 C -0.15 -1.71 8.54 -39.43 -0.34 -2.05 16 5 C -0.01 -0.14 6.85 -79.98 -0.55 -0.69 16 6 N 0.03 0.41 4.45 33.95 0.15 0.56 16 7 O -0.17 -2.28 18.45 -29.46 -0.54 -2.83 16 8 O -0.16 -2.16 18.45 -29.46 -0.54 -2.70 16 9 C -0.09 -0.90 9.55 -39.56 -0.38 -1.28 16 10 C -0.07 -0.72 9.70 -39.60 -0.38 -1.11 16 11 C -0.03 -0.41 5.15 -104.48 -0.54 -0.94 16 12 C -0.07 -0.98 5.85 36.00 0.21 -0.77 16 13 S -0.25 -4.88 21.64 -107.50 -2.33 -7.20 16 14 C 0.05 1.07 4.77 36.00 0.17 1.24 16 15 C -0.52 -14.33 9.68 -34.44 -0.33 -14.66 16 16 H 0.08 2.56 7.96 -52.49 -0.42 2.14 16 17 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 18 N -0.89 -26.36 13.96 55.43 0.77 -25.59 16 19 Si 0.88 20.31 27.47 -169.99 -4.67 15.64 16 20 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.27 -5.82 6.54 56.52 0.37 -5.45 16 23 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.06 0.45 7.66 -51.93 -0.40 0.06 16 25 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16 26 H 0.16 1.49 5.85 -52.48 -0.31 1.19 16 27 H 0.16 1.32 7.61 -52.49 -0.40 0.93 16 28 H 0.16 1.32 8.06 -52.49 -0.42 0.90 16 29 H 0.09 1.15 8.09 -51.92 -0.42 0.73 16 30 H 0.10 1.36 7.53 -51.92 -0.39 0.97 16 31 H 0.04 0.81 7.20 -51.92 -0.37 0.43 16 32 H 0.03 0.71 7.57 -51.93 -0.39 0.32 16 33 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 308.37 15.07 4.65 4.65 Total: -1.00 -31.25 308.37 -7.71 -38.96 By element: Atomic # 1 Polarization: 1.17 SS G_CDS: -3.51 Total: -2.34 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: -1.50 Total: -15.43 kcal Atomic # 7 Polarization: -25.95 SS G_CDS: 0.92 Total: -25.02 kcal Atomic # 8 Polarization: -7.98 SS G_CDS: -1.27 Total: -9.26 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -4.67 Total: 15.64 kcal Atomic # 16 Polarization: -4.88 SS G_CDS: -2.33 Total: -7.20 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.25 -7.71 -38.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413013908.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.005 kcal (2) G-P(sol) polarization free energy of solvation -31.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds