Wall clock time and date at job start Tue Mar 31 2020 05:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35900 * 117.00221 * 2 1 4 4 C 1.38752 * 120.05281 * 0.02562 * 3 2 1 5 5 C 1.38127 * 119.94237 * 179.97438 * 4 3 2 6 6 C 1.38291 * 120.05324 * 359.97438 * 5 4 3 7 7 N 1.48007 * 119.94186 * 180.02562 * 6 5 4 8 8 O 1.21801 * 120.00272 * 0.02562 * 7 6 5 9 9 O 1.21799 * 119.99841 * 179.97438 * 7 6 5 10 10 C 1.38240 * 120.11215 * 359.79178 * 6 5 4 11 11 C 1.38169 * 120.05565 * 0.46179 * 10 6 5 12 12 C 1.50703 * 120.02755 * 179.79270 * 11 10 6 13 13 S 1.81401 * 109.47002 * 269.72061 * 12 11 10 14 14 C 1.81397 * 102.99785 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47105 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00088 * 359.97438 * 15 14 13 17 17 C 1.37878 * 120.00111 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00117 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 120.00188 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.46819 * 90.00324 * 19 17 15 21 21 H 1.48492 * 109.47137 * 210.00811 * 19 17 15 22 22 H 1.48497 * 109.46769 * 330.00717 * 19 17 15 23 23 H 1.09003 * 109.46482 * 299.99926 * 1 2 3 24 24 H 1.09000 * 109.47026 * 59.99381 * 1 2 3 25 25 H 1.08997 * 109.47370 * 179.97438 * 1 2 3 26 26 H 1.07999 * 120.03183 * 0.02562 * 4 3 2 27 27 H 1.07990 * 119.97453 * 180.02562 * 5 4 3 28 28 H 1.08002 * 119.97259 * 180.22603 * 10 6 5 29 29 H 1.09002 * 109.47152 * 149.72161 * 12 11 10 30 30 H 1.09001 * 109.46980 * 29.72262 * 12 11 10 31 31 H 1.09004 * 109.47371 * 299.99984 * 14 13 12 32 32 H 1.09000 * 109.47527 * 60.00229 * 14 13 12 33 33 H 0.96998 * 120.00518 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9210 3.6047 0.0011 6 6 3.3021 3.6757 0.0016 7 7 3.9741 4.9944 0.0028 8 8 3.3108 6.0160 0.0037 9 8 5.1904 5.0581 0.0037 10 6 4.0561 2.5170 0.0060 11 6 3.4312 1.2847 0.0001 12 6 4.2538 0.0220 0.0002 13 16 4.5838 -0.4847 -1.7101 14 6 5.5683 -1.9944 -1.5056 15 6 5.9287 -2.5465 -2.8607 16 1 5.5983 -2.0400 -3.7555 17 6 6.6796 -3.6988 -2.9583 18 7 6.9937 -4.1808 -4.1409 19 14 7.2507 -4.5753 -1.4107 20 1 6.2289 -5.5720 -1.0008 21 1 8.5369 -5.2669 -1.6796 22 1 7.4399 -3.5838 -0.3215 23 1 -0.3632 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 0.2129 2.3204 0.0014 27 1 1.3342 4.5113 0.0019 28 1 5.1345 2.5750 0.0101 29 1 3.7064 -0.7682 0.5140 30 1 5.1978 0.2034 0.5140 31 1 6.4794 -1.7622 -0.9542 32 1 4.9884 -2.7345 -0.9540 33 1 7.5222 -4.9913 -4.2096 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413016105.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:51 Heat of formation + Delta-G solvation = -20.773946 kcal Electronic energy + Delta-G solvation = -19053.749715 eV Core-core repulsion = 15788.549699 eV Total energy + Delta-G solvation = -3265.200016 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.20415 -40.72682 -37.98412 -36.57145 -33.47576 -33.08983 -31.40532 -29.43841 -28.18636 -27.50121 -26.00236 -22.92267 -22.49644 -21.85887 -19.02543 -18.73095 -18.54052 -17.54311 -16.97553 -16.75965 -16.29874 -15.57866 -15.12100 -14.59911 -14.36514 -13.93191 -13.78611 -13.48183 -13.20183 -12.97290 -12.51236 -12.35276 -12.18755 -11.71881 -11.63121 -11.47887 -11.22155 -11.15704 -10.87366 -10.71627 -10.21872 -9.79171 -9.50002 -9.13159 -8.77153 -8.75894 -6.91109 -6.22720 -4.25504 -0.19940 0.57388 1.24955 1.37313 2.35120 2.72610 3.15667 3.17421 3.25116 3.25173 3.53698 4.02803 4.12727 4.26189 4.37251 4.51464 4.71505 4.77837 4.87124 5.00775 5.08342 5.14708 5.25921 5.38822 5.50064 5.59331 5.77355 5.96311 6.33393 6.50655 6.62261 6.76578 7.36479 7.63040 8.24867 8.79500 9.32454 10.89317 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.019614 B = 0.004175 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.193917 B = 6705.669796 C = 7665.330114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.289 6.289 3 C 0.196 3.804 4 C -0.211 4.211 5 C -0.016 4.016 6 C -0.084 4.084 7 N 0.038 4.962 8 O -0.174 6.174 9 O -0.163 6.163 10 C -0.003 4.003 11 C -0.087 4.087 12 C -0.058 4.058 13 S -0.253 6.253 14 C 0.047 3.953 15 C -0.516 4.516 16 H 0.083 0.917 17 C 0.081 3.919 18 N -0.890 5.890 19 Si 0.878 3.122 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.266 1.266 23 H 0.060 0.940 24 H 0.063 0.937 25 H 0.109 0.891 26 H 0.152 0.848 27 H 0.155 0.845 28 H 0.162 0.838 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.036 0.964 32 H 0.031 0.969 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.991 11.320 12.360 21.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.199 6.199 3 C 0.147 3.853 4 C -0.230 4.230 5 C -0.036 4.036 6 C -0.168 4.168 7 N 0.555 4.445 8 O -0.387 6.387 9 O -0.378 6.378 10 C -0.024 4.024 11 C -0.090 4.090 12 C -0.206 4.206 13 S -0.024 6.024 14 C -0.101 4.101 15 C -0.554 4.554 16 H 0.101 0.899 17 C -0.124 4.124 18 N -0.528 5.528 19 Si 0.705 3.295 20 H -0.199 1.199 21 H -0.207 1.207 22 H -0.191 1.191 23 H 0.078 0.922 24 H 0.082 0.918 25 H 0.127 0.873 26 H 0.170 0.830 27 H 0.172 0.828 28 H 0.180 0.820 29 H 0.113 0.887 30 H 0.108 0.892 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.449 10.787 11.317 21.288 hybrid contribution 0.639 -0.725 1.752 2.001 sum -13.810 10.061 13.069 21.511 Atomic orbital electron populations 1.23278 0.77363 1.05140 1.01691 1.86262 1.22131 1.25436 1.86102 1.19164 0.91734 0.85053 0.89369 1.21187 1.01110 0.90578 1.10150 1.20745 0.91438 0.99441 0.91926 1.20861 0.93132 0.82858 1.19973 1.43485 1.01078 1.02780 0.97150 1.94505 1.65519 1.24437 1.54209 1.94558 0.95777 1.93919 1.53596 1.20749 1.02033 0.88491 0.91122 1.18639 0.90410 0.94326 1.05584 1.22119 1.01373 0.96069 1.01003 1.86996 1.72025 1.37132 1.06231 1.21451 0.95683 0.90930 1.02037 1.20450 1.34622 1.09952 0.90425 0.89860 1.24852 0.95027 0.96336 0.96188 1.69861 1.37841 1.22145 1.22911 0.86803 0.78794 0.80247 0.83663 1.19887 1.20732 1.19064 0.92182 0.91825 0.87271 0.83033 0.82782 0.82020 0.88731 0.89195 0.94564 0.95043 0.92156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 101.05 0.99 1.12 16 2 O -0.29 -3.24 9.54 -19.43 -0.19 -3.43 16 3 C 0.20 2.24 6.66 -39.22 -0.26 1.98 16 4 C -0.21 -1.86 9.04 -39.43 -0.36 -2.22 16 5 C -0.02 -0.15 9.55 -39.60 -0.38 -0.53 16 6 C -0.08 -1.05 6.85 -79.93 -0.55 -1.59 16 7 N 0.04 0.54 4.45 33.97 0.15 0.69 16 8 O -0.17 -2.48 18.44 -29.46 -0.54 -3.02 16 9 O -0.16 -2.50 18.44 -29.46 -0.54 -3.04 16 10 C 0.00 -0.04 9.20 -39.61 -0.36 -0.40 16 11 C -0.09 -1.14 5.15 -104.47 -0.54 -1.68 16 12 C -0.06 -0.88 5.85 36.01 0.21 -0.67 16 13 S -0.25 -5.15 21.64 -107.50 -2.33 -7.48 16 14 C 0.05 1.10 4.77 36.01 0.17 1.27 16 15 C -0.52 -14.53 9.68 -34.44 -0.33 -14.86 16 16 H 0.08 2.59 7.96 -52.49 -0.42 2.17 16 17 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 18 N -0.89 -26.66 13.96 55.43 0.77 -25.89 16 19 Si 0.88 20.61 27.47 -169.99 -4.67 15.94 16 20 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.27 -5.94 6.54 56.52 0.37 -5.57 16 23 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 24 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 25 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.15 0.83 6.30 -52.49 -0.33 0.50 16 27 H 0.15 1.19 7.60 -52.49 -0.40 0.79 16 28 H 0.16 1.99 7.60 -52.49 -0.40 1.59 16 29 H 0.09 1.37 7.53 -51.92 -0.39 0.98 16 30 H 0.09 1.23 8.08 -51.92 -0.42 0.81 16 31 H 0.04 0.83 7.20 -51.92 -0.37 0.46 16 32 H 0.03 0.71 7.57 -51.92 -0.39 0.32 16 33 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 308.37 15.07 4.65 4.65 Total: -1.00 -32.15 308.37 -7.71 -39.86 By element: Atomic # 1 Polarization: 0.62 SS G_CDS: -3.51 Total: -2.88 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: -1.50 Total: -15.40 kcal Atomic # 7 Polarization: -26.12 SS G_CDS: 0.92 Total: -25.20 kcal Atomic # 8 Polarization: -8.22 SS G_CDS: -1.27 Total: -9.49 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.67 Total: 15.94 kcal Atomic # 16 Polarization: -5.15 SS G_CDS: -2.33 Total: -7.48 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.15 -7.71 -39.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413016105.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.089 kcal (2) G-P(sol) polarization free energy of solvation -32.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds