Wall clock time and date at job start Tue Mar 31 2020 05:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86800 * 120.00118 * 2 1 4 4 H 1.48503 * 109.46899 * 269.99959 * 3 2 1 5 5 H 1.48496 * 109.47336 * 29.99526 * 3 2 1 6 6 H 1.48500 * 109.47072 * 150.00043 * 3 2 1 7 7 C 1.38810 * 120.00050 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00424 * 180.02562 * 7 2 1 9 9 N 1.36945 * 120.00095 * 0.02562 * 7 2 1 10 10 C 1.47138 * 125.64914 * 179.97438 * 9 7 2 11 11 C 1.55227 * 107.03096 * 179.25189 * 10 9 7 12 12 H 1.09005 * 112.80927 * 145.38386 * 11 10 9 13 13 O 1.43053 * 106.24522 * 269.13757 * 11 10 9 14 14 C 1.35452 * 119.60479 * 148.23609 * 13 11 10 15 15 C 1.39053 * 119.55771 * 162.27724 * 14 13 11 16 16 F 1.35102 * 119.93238 * 359.13930 * 15 14 13 17 17 C 1.38282 * 120.13641 * 179.18009 * 15 14 13 18 18 C 1.38303 * 120.12547 * 359.89000 * 17 15 14 19 19 C 1.38332 * 120.04611 * 0.41272 * 18 17 15 20 20 F 1.35100 * 119.97283 * 180.02562 * 19 18 17 21 21 C 1.38761 * 120.78194 * 342.08294 * 14 13 11 22 22 O 1.35712 * 120.28789 * 2.56176 * 21 14 13 23 23 C 1.41483 * 120.36237 * 346.94826 * 22 21 14 24 24 H 1.08993 * 110.64515 * 157.46742 * 23 22 21 25 25 C 1.47759 * 125.64171 * 0.02562 * 9 7 2 26 26 H 0.97000 * 120.00043 * 0.02562 * 1 2 3 27 27 H 1.09008 * 109.91635 * 59.90820 * 10 9 7 28 28 H 1.08998 * 109.91905 * 298.60390 * 10 9 7 29 29 H 1.07999 * 119.94089 * 179.88771 * 17 15 14 30 30 H 1.07999 * 119.97717 * 180.40018 * 18 17 15 31 31 H 1.09002 * 110.48433 * 37.73596 * 25 9 7 32 32 H 1.08997 * 110.59576 * 275.15713 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 1.9322 -3.7286 0.0005 11 6 0.7676 -4.7547 0.0199 12 1 0.9905 -5.6576 -0.5487 13 8 0.4974 -5.0274 1.3980 14 6 -0.7660 -5.3236 1.7862 15 6 -0.9795 -5.9406 3.0140 16 9 0.0718 -6.2558 3.8019 17 6 -2.2655 -6.2331 3.4297 18 6 -3.3446 -5.9109 2.6270 19 6 -3.1393 -5.3027 1.4017 20 9 -4.1946 -4.9882 0.6190 21 6 -1.8489 -5.0150 0.9753 22 8 -1.6524 -4.4566 -0.2458 23 6 -0.3863 -3.9315 -0.5967 24 1 -0.2731 -3.8929 -1.6801 25 6 -0.1449 -2.5334 -0.0005 26 1 -0.4850 0.8400 -0.0004 27 1 2.5535 -3.8550 0.8873 28 1 2.5323 -3.8646 -0.8992 29 1 -2.4275 -6.7140 4.3831 30 1 -4.3484 -6.1346 2.9570 31 1 -0.6035 -1.7676 -0.6262 32 1 -0.5363 -2.4794 1.0153 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425507640.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:57 Heat of formation + Delta-G solvation = -110.260729 kcal Electronic energy + Delta-G solvation = -22756.806546 eV Core-core repulsion = 18933.885705 eV Total energy + Delta-G solvation = -3822.920840 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.081 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.97007 -49.95493 -42.58986 -39.29097 -38.52059 -37.43343 -34.28460 -31.68294 -31.04722 -29.99360 -29.26613 -26.55154 -25.22394 -23.90260 -22.45454 -21.49819 -20.41283 -19.34934 -19.03126 -18.54906 -17.77838 -17.38696 -17.24917 -16.69471 -16.53580 -16.33597 -15.91936 -15.58017 -15.45694 -15.38885 -15.11095 -14.73618 -14.16512 -13.94080 -13.70663 -13.34741 -13.12926 -13.02292 -12.74099 -12.58115 -12.24565 -12.05064 -11.93499 -11.77777 -11.38556 -10.87630 -9.46829 -9.37754 -9.06068 -7.88570 -5.35538 -0.24197 -0.06706 1.44856 1.47243 1.55821 1.59571 1.87491 2.20827 2.42850 2.74862 3.03668 3.05794 3.25575 3.48064 3.55859 3.66183 3.69849 3.79016 4.00946 4.29058 4.32297 4.52934 4.54900 4.75039 4.83408 4.87413 4.95632 5.18052 5.37474 5.47900 5.55440 5.75893 6.09443 6.27073 6.94287 7.60626 8.21666 9.15216 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.022006 B = 0.005652 C = 0.005198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.091791 B = 4952.667647 C = 5385.212849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.066 4.066 3 Si 0.988 3.012 4 H -0.279 1.279 5 H -0.297 1.297 6 H -0.268 1.268 7 C -0.242 4.242 8 H 0.092 0.908 9 N -0.620 5.620 10 C 0.134 3.866 11 C 0.051 3.949 12 H 0.149 0.851 13 O -0.310 6.310 14 C 0.028 3.972 15 C 0.077 3.923 16 F -0.133 7.133 17 C -0.104 4.104 18 C -0.105 4.105 19 C 0.082 3.918 20 F -0.132 7.132 21 C 0.025 3.975 22 O -0.300 6.300 23 C 0.044 3.956 24 H 0.156 0.844 25 C 0.152 3.848 26 H 0.249 0.751 27 H 0.041 0.959 28 H 0.080 0.920 29 H 0.197 0.803 30 H 0.198 0.802 31 H 0.088 0.912 32 H -0.023 1.023 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.009 -14.940 3.479 16.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.259 4.259 3 Si 0.815 3.185 4 H -0.206 1.206 5 H -0.223 1.223 6 H -0.193 1.193 7 C -0.370 4.370 8 H 0.110 0.890 9 N -0.348 5.348 10 C 0.010 3.990 11 C -0.005 4.005 12 H 0.166 0.834 13 O -0.225 6.225 14 C -0.019 4.019 15 C 0.057 3.943 16 F -0.112 7.112 17 C -0.123 4.123 18 C -0.123 4.123 19 C 0.062 3.938 20 F -0.111 7.111 21 C -0.021 4.021 22 O -0.213 6.213 23 C -0.014 4.014 24 H 0.173 0.827 25 C 0.026 3.974 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.098 0.902 29 H 0.215 0.785 30 H 0.215 0.785 31 H 0.106 0.894 32 H -0.005 1.005 Dipole moment (debyes) X Y Z Total from point charges -4.969 -14.692 3.436 15.885 hybrid contribution 0.608 1.380 -0.155 1.515 sum -4.361 -13.312 3.281 14.388 Atomic orbital electron populations 1.70009 1.06525 1.25472 1.58125 1.25740 0.96619 1.01445 1.02058 0.84945 0.77445 0.78337 0.77771 1.20566 1.22325 1.19312 1.19508 0.91307 0.82937 1.43287 0.88976 1.44722 1.01432 1.01292 1.87341 1.21856 0.93333 0.82965 1.00884 1.24671 0.96161 0.99476 0.80174 0.83372 1.85984 1.23481 1.84700 1.28288 1.18872 0.84688 1.02232 0.96109 1.17299 0.85940 1.02824 0.88244 1.91488 1.56383 1.90773 1.72552 1.21178 0.87145 1.01197 1.02735 1.21191 1.02638 0.98502 0.89968 1.17206 0.79815 1.04740 0.92050 1.91495 1.54215 1.91198 1.74160 1.18920 0.93145 1.01400 0.88679 1.85505 1.34426 1.72647 1.28744 1.24156 0.80522 0.94197 1.02513 0.82721 1.21870 0.85447 0.93507 0.96596 0.94089 0.94109 0.90215 0.78548 0.78458 0.89413 1.00495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.33 10.10 21.65 0.22 -57.11 16 2 C -0.07 -3.73 5.49 84.86 0.47 -3.27 16 3 Si 0.99 45.32 29.55 68.60 2.03 47.35 16 4 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 5 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.24 -13.38 10.28 84.03 0.86 -12.52 16 8 H 0.09 4.78 7.83 -2.91 -0.02 4.75 16 9 N -0.62 -31.80 3.40 -691.01 -2.35 -34.15 16 10 C 0.13 5.34 6.88 87.02 0.60 5.94 16 11 C 0.05 1.79 4.43 31.90 0.14 1.93 16 12 H 0.15 3.88 8.14 -2.38 -0.02 3.86 16 13 O -0.31 -12.18 9.34 -74.24 -0.69 -12.87 16 14 C 0.03 1.00 6.58 22.59 0.15 1.15 16 15 C 0.08 2.28 7.30 22.48 0.16 2.45 16 16 F -0.13 -4.15 17.09 44.97 0.77 -3.38 16 17 C -0.10 -2.08 10.01 22.30 0.22 -1.86 16 18 C -0.10 -2.09 10.02 22.31 0.22 -1.87 16 19 C 0.08 2.43 7.30 22.45 0.16 2.60 16 20 F -0.13 -4.12 17.09 44.97 0.77 -3.35 16 21 C 0.03 0.90 6.46 22.56 0.15 1.05 16 22 O -0.30 -11.81 9.82 -76.76 -0.75 -12.57 16 23 C 0.04 1.71 3.89 31.43 0.12 1.83 16 24 H 0.16 5.34 8.14 -2.39 -0.02 5.32 16 25 C 0.15 7.77 5.43 86.44 0.47 8.24 16 26 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 27 H 0.04 1.69 8.00 -2.38 -0.02 1.67 16 28 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 29 H 0.20 2.17 8.06 -2.91 -0.02 2.14 16 30 H 0.20 2.17 8.06 -2.91 -0.02 2.14 16 31 H 0.09 5.07 5.94 -2.39 -0.01 5.06 16 32 H -0.02 -1.34 8.04 -2.39 -0.02 -1.36 16 Total: -1.00 -70.94 280.45 4.88 -66.06 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: 1.17 Total: 4.35 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: 3.73 Total: 5.67 kcal Atomic # 7 Polarization: -89.13 SS G_CDS: -2.13 Total: -91.26 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -1.45 Total: -25.44 kcal Atomic # 9 Polarization: -8.27 SS G_CDS: 1.54 Total: -6.73 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -70.94 4.88 -66.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425507640.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.202 kcal (2) G-P(sol) polarization free energy of solvation -70.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds