Wall clock time and date at job start Tue Mar 31 2020 05:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 120.00177 * 2 1 4 4 H 1.48500 * 109.47213 * 269.99642 * 3 2 1 5 5 H 1.48494 * 109.46914 * 29.99893 * 3 2 1 6 6 H 1.48500 * 109.46984 * 149.99756 * 3 2 1 7 7 C 1.37880 * 119.99851 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00350 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00021 * 180.02562 * 7 2 1 10 10 S 1.81401 * 109.47414 * 180.02562 * 9 7 2 11 11 C 1.81398 * 103.00239 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.47094 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.47247 * 179.97438 * 12 11 10 14 14 O 1.21294 * 119.99719 * 359.97438 * 13 12 11 15 15 N 1.34766 * 120.00384 * 179.97438 * 13 12 11 16 16 C 1.40045 * 120.00587 * 185.53281 * 15 13 12 17 17 C 1.38809 * 120.07182 * 24.80918 * 16 15 13 18 18 C 1.38151 * 119.95125 * 179.97438 * 17 16 15 19 19 C 1.38279 * 120.11073 * 359.97438 * 18 17 16 20 20 C 1.38262 * 120.15847 * 359.97438 * 19 18 17 21 21 C 1.38315 * 120.04645 * 0.02562 * 20 19 18 22 22 F 1.35094 * 120.05690 * 179.97438 * 21 20 19 23 23 H 0.97007 * 120.00083 * 0.02562 * 1 2 3 24 24 H 1.09006 * 109.47351 * 60.00476 * 9 7 2 25 25 H 1.08996 * 109.47519 * 300.00047 * 9 7 2 26 26 H 1.08999 * 109.46986 * 60.00138 * 11 10 9 27 27 H 1.08998 * 109.46788 * 299.99957 * 11 10 9 28 28 H 1.09000 * 109.46779 * 59.99833 * 12 11 10 29 29 H 1.08997 * 109.46709 * 299.99909 * 12 11 10 30 30 H 0.97003 * 119.99957 * 5.53130 * 15 13 12 31 31 H 1.07995 * 120.02798 * 359.95622 * 17 16 15 32 32 H 1.07998 * 119.94395 * 180.02562 * 18 17 16 33 33 H 1.08005 * 119.92011 * 179.97438 * 19 18 17 34 34 H 1.08002 * 119.97761 * 179.74040 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5466 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5114 -1.1941 0.0011 10 16 4.1161 -2.9044 0.0010 11 6 5.9186 -2.7000 0.0025 12 6 6.5879 -4.0759 0.0019 13 6 8.0853 -3.9061 0.0025 14 8 8.5695 -2.7940 0.0029 15 7 8.8864 -4.9898 0.0027 16 6 10.2733 -4.8355 0.1202 17 6 10.7980 -3.7058 0.7329 18 6 12.1666 -3.5564 0.8480 19 6 13.0147 -4.5305 0.3542 20 6 12.4970 -5.6580 -0.2560 21 6 11.1279 -5.8143 -0.3747 22 9 10.6218 -6.9156 -0.9714 23 1 -0.4850 0.8401 -0.0004 24 1 3.8745 -0.6802 0.8912 25 1 3.8752 -0.6805 -0.8888 26 1 6.2209 -2.1488 0.8929 27 1 6.2223 -2.1482 -0.8870 28 1 6.2853 -4.6266 -0.8888 29 1 6.2840 -4.6280 0.8912 30 1 8.5023 -5.8768 -0.0786 31 1 10.1369 -2.9442 1.1192 32 1 12.5747 -2.6777 1.3251 33 1 14.0842 -4.4103 0.4455 34 1 13.1622 -6.4150 -0.6444 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591134186.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:50 Heat of formation + Delta-G solvation = -61.888083 kcal Electronic energy + Delta-G solvation = -18463.284211 eV Core-core repulsion = 15208.674142 eV Total energy + Delta-G solvation = -3254.610069 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.078 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.24960 -40.80566 -38.69322 -35.19457 -33.08445 -33.00302 -30.92066 -29.86083 -29.36790 -25.23991 -23.49489 -22.74548 -22.16775 -20.54157 -18.58517 -17.55286 -17.43275 -16.90214 -16.45136 -15.98451 -15.78737 -15.27609 -15.25443 -14.58339 -14.27179 -14.06603 -13.93859 -13.39551 -12.89737 -12.85028 -12.59139 -12.44641 -12.26150 -12.17673 -11.88003 -11.38481 -10.96192 -10.81039 -10.49654 -10.21059 -9.89293 -9.66777 -9.18623 -9.03329 -8.72640 -8.46197 -6.87856 -6.19456 -4.21820 0.72392 0.86463 2.21991 2.28802 2.81083 3.21524 3.28869 3.30628 3.30955 3.61556 3.82274 4.30367 4.32909 4.46603 4.63689 4.81583 4.88399 4.97245 5.02581 5.12007 5.17458 5.48948 5.59672 5.75123 5.78356 5.81116 5.98943 6.07052 6.12788 6.57775 6.58590 6.68044 6.94126 7.40721 7.74801 8.28503 8.82780 9.36281 10.92527 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.037890 B = 0.002806 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.798861 B = 9977.498014 C =10608.850190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.080 3.920 3 Si 0.878 3.122 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.265 1.265 7 C -0.515 4.515 8 H 0.084 0.916 9 C 0.051 3.949 10 S -0.271 6.271 11 C -0.085 4.085 12 C -0.118 4.118 13 C 0.521 3.479 14 O -0.513 6.513 15 N -0.672 5.672 16 C 0.125 3.875 17 C -0.108 4.108 18 C -0.106 4.106 19 C -0.115 4.115 20 C -0.133 4.133 21 C 0.061 3.939 22 F -0.139 7.139 23 H 0.268 0.732 24 H 0.036 0.964 25 H 0.031 0.969 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.416 0.584 31 H 0.156 0.844 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.941 -11.435 1.177 28.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.125 4.125 3 Si 0.704 3.296 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.190 1.190 7 C -0.554 4.554 8 H 0.102 0.898 9 C -0.097 4.097 10 S -0.044 6.044 11 C -0.234 4.234 12 C -0.159 4.159 13 C 0.308 3.692 14 O -0.387 6.387 15 N -0.317 5.317 16 C 0.029 3.971 17 C -0.128 4.128 18 C -0.125 4.125 19 C -0.134 4.134 20 C -0.152 4.152 21 C 0.039 3.961 22 F -0.118 7.118 23 H 0.078 0.922 24 H 0.054 0.946 25 H 0.050 0.950 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.125 0.875 29 H 0.126 0.874 30 H 0.252 0.748 31 H 0.174 0.826 32 H 0.151 0.849 33 H 0.150 0.850 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 25.400 -11.468 1.164 27.893 hybrid contribution 0.778 1.321 -0.237 1.552 sum 26.178 -10.147 0.927 28.091 Atomic orbital electron populations 1.69863 1.06145 1.27321 1.49518 1.24851 0.94762 0.98745 0.94109 0.86812 0.80341 0.83563 0.78877 1.19846 1.20767 1.19014 1.20478 0.86880 0.95323 1.52728 0.89799 1.21410 1.01012 0.87996 0.99249 1.86606 1.00070 1.19729 1.98032 1.23013 0.96825 0.97878 1.05683 1.21393 0.88778 0.99649 1.06075 1.21091 0.89760 0.83735 0.74567 1.90682 1.76474 1.24704 1.46850 1.43566 1.04125 1.11194 1.72835 1.17863 0.83160 0.96355 0.99753 1.21438 0.96166 0.97334 0.97892 1.21189 0.92725 0.99268 0.99334 1.21017 1.00367 0.93315 0.98677 1.20985 0.92462 0.99941 1.01844 1.17422 0.91918 0.85695 1.01022 1.91480 1.87773 1.50956 1.81542 0.92198 0.94585 0.95043 0.90000 0.90007 0.87492 0.87367 0.74753 0.82646 0.84911 0.84950 0.84430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.95 13.96 55.43 0.77 -26.18 16 2 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 3 Si 0.88 21.15 27.47 -169.99 -4.67 16.48 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 7 C -0.52 -14.72 9.68 -34.44 -0.33 -15.05 16 8 H 0.08 2.62 7.96 -52.49 -0.42 2.20 16 9 C 0.05 1.24 4.76 36.00 0.17 1.41 16 10 S -0.27 -5.54 21.66 -107.50 -2.33 -7.86 16 11 C -0.09 -1.35 5.23 37.16 0.19 -1.15 16 12 C -0.12 -1.37 5.71 -27.88 -0.16 -1.53 16 13 C 0.52 6.26 7.64 -10.99 -0.08 6.18 16 14 O -0.51 -7.76 13.15 5.55 0.07 -7.69 16 15 N -0.67 -6.66 5.31 -9.81 -0.05 -6.71 16 16 C 0.12 1.33 6.44 -83.59 -0.54 0.79 16 17 C -0.11 -1.15 8.72 -39.40 -0.34 -1.49 16 18 C -0.11 -0.88 10.04 -39.60 -0.40 -1.28 16 19 C -0.11 -0.81 10.04 -39.56 -0.40 -1.21 16 20 C -0.13 -1.04 10.02 -39.54 -0.40 -1.44 16 21 C 0.06 0.59 7.31 -39.25 -0.29 0.31 16 22 F -0.14 -1.37 16.81 2.25 0.04 -1.33 16 23 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 24 H 0.04 0.87 7.20 -51.92 -0.37 0.49 16 25 H 0.03 0.75 7.57 -51.93 -0.39 0.35 16 26 H 0.08 1.32 8.10 -51.92 -0.42 0.90 16 27 H 0.08 1.34 8.10 -51.93 -0.42 0.91 16 28 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.11 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.42 3.04 8.46 -40.82 -0.35 2.70 16 31 H 0.16 1.87 5.79 -52.49 -0.30 1.57 16 32 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 33 H 0.13 0.58 8.06 -52.48 -0.42 0.15 16 34 H 0.14 0.78 8.06 -52.49 -0.42 0.35 16 LS Contribution 312.10 15.07 4.70 4.70 Total: -1.00 -32.37 312.10 -8.08 -40.45 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -3.96 Total: 0.40 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: -2.67 Total: -12.27 kcal Atomic # 7 Polarization: -33.61 SS G_CDS: 0.72 Total: -32.88 kcal Atomic # 8 Polarization: -7.76 SS G_CDS: 0.07 Total: -7.69 kcal Atomic # 9 Polarization: -1.37 SS G_CDS: 0.04 Total: -1.33 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.67 Total: 16.48 kcal Atomic # 16 Polarization: -5.54 SS G_CDS: -2.33 Total: -7.86 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.37 -8.08 -40.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591134186.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.434 kcal (2) G-P(sol) polarization free energy of solvation -32.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds