Wall clock time and date at job start Tue Mar 31 2020 05:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 120.00177 * 2 1 4 4 H 1.48500 * 109.47213 * 269.99642 * 3 2 1 5 5 H 1.48494 * 109.46914 * 29.99893 * 3 2 1 6 6 H 1.48500 * 109.46984 * 149.99756 * 3 2 1 7 7 C 1.37880 * 119.99851 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00350 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00021 * 180.02562 * 7 2 1 10 10 S 1.81401 * 109.47414 * 180.02562 * 9 7 2 11 11 C 1.81398 * 103.00239 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.47094 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.47247 * 179.97438 * 12 11 10 14 14 O 1.21294 * 119.99719 * 359.97438 * 13 12 11 15 15 N 1.34766 * 120.00384 * 179.97438 * 13 12 11 16 16 C 1.40045 * 120.00587 * 185.53281 * 15 13 12 17 17 C 1.38809 * 120.07182 * 24.80918 * 16 15 13 18 18 C 1.38151 * 119.95125 * 179.97438 * 17 16 15 19 19 C 1.38279 * 120.11073 * 359.97438 * 18 17 16 20 20 C 1.38262 * 120.15847 * 359.97438 * 19 18 17 21 21 C 1.38315 * 120.04645 * 0.02562 * 20 19 18 22 22 F 1.35094 * 120.05690 * 179.97438 * 21 20 19 23 23 H 0.97007 * 120.00083 * 0.02562 * 1 2 3 24 24 H 1.09006 * 109.47351 * 60.00476 * 9 7 2 25 25 H 1.08996 * 109.47519 * 300.00047 * 9 7 2 26 26 H 1.08999 * 109.46986 * 60.00138 * 11 10 9 27 27 H 1.08998 * 109.46788 * 299.99957 * 11 10 9 28 28 H 1.09000 * 109.46779 * 59.99833 * 12 11 10 29 29 H 1.08997 * 109.46709 * 299.99909 * 12 11 10 30 30 H 0.97003 * 119.99957 * 5.53130 * 15 13 12 31 31 H 1.07995 * 120.02798 * 359.95622 * 17 16 15 32 32 H 1.07998 * 119.94395 * 180.02562 * 18 17 16 33 33 H 1.08005 * 119.92011 * 179.97438 * 19 18 17 34 34 H 1.08002 * 119.97761 * 179.74040 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5466 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5114 -1.1941 0.0011 10 16 4.1161 -2.9044 0.0010 11 6 5.9186 -2.7000 0.0025 12 6 6.5879 -4.0759 0.0019 13 6 8.0853 -3.9061 0.0025 14 8 8.5695 -2.7940 0.0029 15 7 8.8864 -4.9898 0.0027 16 6 10.2733 -4.8355 0.1202 17 6 10.7980 -3.7058 0.7329 18 6 12.1666 -3.5564 0.8480 19 6 13.0147 -4.5305 0.3542 20 6 12.4970 -5.6580 -0.2560 21 6 11.1279 -5.8143 -0.3747 22 9 10.6218 -6.9156 -0.9714 23 1 -0.4850 0.8401 -0.0004 24 1 3.8745 -0.6802 0.8912 25 1 3.8752 -0.6805 -0.8888 26 1 6.2209 -2.1488 0.8929 27 1 6.2223 -2.1482 -0.8870 28 1 6.2853 -4.6266 -0.8888 29 1 6.2840 -4.6280 0.8912 30 1 8.5023 -5.8768 -0.0786 31 1 10.1369 -2.9442 1.1192 32 1 12.5747 -2.6777 1.3251 33 1 14.0842 -4.4103 0.4455 34 1 13.1622 -6.4150 -0.6444 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591134186.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:49 Heat of formation + Delta-G solvation = -81.749657 kcal Electronic energy + Delta-G solvation = -18464.145474 eV Core-core repulsion = 15208.674142 eV Total energy + Delta-G solvation = -3255.471331 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.078 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.96695 -41.66501 -39.43717 -36.02270 -35.22400 -34.10780 -31.57898 -31.47380 -30.59877 -26.33211 -24.67846 -24.06078 -23.18211 -21.44548 -19.35088 -19.10256 -18.41120 -18.14350 -17.27800 -17.07881 -16.73945 -16.60508 -16.14607 -15.90849 -15.45924 -15.26621 -14.98723 -14.64541 -14.45836 -14.16950 -13.95326 -13.59063 -13.52430 -12.85809 -12.74194 -12.56909 -12.42021 -12.20709 -12.09018 -11.78098 -11.73280 -10.91939 -10.90727 -10.75443 -9.85926 -9.18788 -8.54235 -8.39307 -6.48723 0.03426 0.20032 0.78710 1.32878 1.33970 1.40820 1.44760 1.87823 1.92986 2.27406 2.64519 2.93649 3.13971 3.51053 3.72306 3.82509 3.90810 4.03877 4.32176 4.35652 4.43476 4.52795 4.60186 4.65686 4.72876 4.84765 4.98597 5.07244 5.20403 5.31075 5.32202 5.47610 5.91932 6.05178 6.17320 6.55238 6.88796 7.13906 8.76396 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.037890 B = 0.002806 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.798861 B = 9977.498014 C =10608.850190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.021 3.979 3 Si 0.950 3.050 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.249 1.249 7 C -0.529 4.529 8 H 0.040 0.960 9 C 0.047 3.953 10 S -0.284 6.284 11 C -0.069 4.069 12 C -0.110 4.110 13 C 0.526 3.474 14 O -0.548 6.548 15 N -0.661 5.661 16 C 0.102 3.898 17 C -0.129 4.129 18 C -0.108 4.108 19 C -0.105 4.105 20 C -0.131 4.131 21 C 0.049 3.951 22 F -0.143 7.143 23 H 0.273 0.727 24 H 0.040 0.960 25 H 0.038 0.962 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.125 0.875 29 H 0.128 0.872 30 H 0.427 0.573 31 H 0.137 0.863 32 H 0.152 0.848 33 H 0.167 0.833 34 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.233 -11.519 1.156 31.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.179 4.179 3 Si 0.773 3.227 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.173 1.173 7 C -0.568 4.568 8 H 0.058 0.942 9 C -0.101 4.101 10 S -0.057 6.057 11 C -0.218 4.218 12 C -0.151 4.151 13 C 0.314 3.686 14 O -0.425 6.425 15 N -0.307 5.307 16 C 0.007 3.993 17 C -0.149 4.149 18 C -0.127 4.127 19 C -0.124 4.124 20 C -0.150 4.150 21 C 0.028 3.972 22 F -0.122 7.122 23 H 0.082 0.918 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.098 0.902 27 H 0.096 0.904 28 H 0.143 0.857 29 H 0.146 0.854 30 H 0.266 0.734 31 H 0.154 0.846 32 H 0.170 0.830 33 H 0.184 0.816 34 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 28.699 -11.603 1.143 30.977 hybrid contribution -0.160 1.215 -0.222 1.245 sum 28.539 -10.388 0.921 30.385 Atomic orbital electron populations 1.70008 1.08141 1.28755 1.50754 1.25853 0.95657 1.03053 0.93346 0.85661 0.79383 0.78105 0.79593 1.18690 1.20012 1.17307 1.20669 0.89298 0.93958 1.52856 0.94171 1.21217 0.98341 0.91010 0.99519 1.86507 1.04338 1.16808 1.98060 1.22999 0.92844 1.00503 1.05456 1.21330 0.88313 0.97429 1.08005 1.20986 0.89793 0.83640 0.74163 1.90680 1.76995 1.26059 1.48803 1.43384 1.04095 1.11226 1.71957 1.18029 0.83299 0.97050 1.00958 1.21425 0.97205 0.97230 0.99076 1.21483 0.91904 1.00307 0.98962 1.21413 1.01900 0.92172 0.96894 1.21366 0.91918 1.00687 1.01057 1.17616 0.92673 0.85488 1.01467 1.91467 1.87960 1.51067 1.81671 0.91783 0.94177 0.94381 0.90170 0.90353 0.85662 0.85403 0.73393 0.84568 0.83017 0.81593 0.82026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.13 13.96 21.45 0.30 -57.83 16 2 C 0.02 1.23 5.47 84.66 0.46 1.69 16 3 Si 0.95 43.44 27.47 68.60 1.88 45.32 16 4 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 5 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 6 H -0.25 -10.66 6.54 99.48 0.65 -10.01 16 7 C -0.53 -31.03 9.68 25.60 0.25 -30.78 16 8 H 0.04 2.63 7.96 -2.91 -0.02 2.61 16 9 C 0.05 2.28 4.76 71.23 0.34 2.62 16 10 S -0.28 -11.50 21.66 -56.49 -1.22 -12.72 16 11 C -0.07 -2.10 5.23 71.98 0.38 -1.72 16 12 C -0.11 -2.36 5.71 29.85 0.17 -2.19 16 13 C 0.53 12.12 7.64 87.66 0.67 12.79 16 14 O -0.55 -16.42 13.15 -3.07 -0.04 -16.46 16 15 N -0.66 -12.39 5.31 -303.33 -1.61 -14.00 16 16 C 0.10 2.08 6.44 38.16 0.25 2.33 16 17 C -0.13 -2.66 8.72 22.39 0.20 -2.47 16 18 C -0.11 -1.56 10.04 22.26 0.22 -1.34 16 19 C -0.11 -1.14 10.04 22.29 0.22 -0.92 16 20 C -0.13 -1.68 10.02 22.29 0.22 -1.46 16 21 C 0.05 0.87 7.31 22.48 0.16 1.04 16 22 F -0.14 -2.61 16.81 44.97 0.76 -1.85 16 23 H 0.27 15.60 8.31 -92.70 -0.77 14.83 16 24 H 0.04 1.89 7.20 -2.39 -0.02 1.87 16 25 H 0.04 1.77 7.57 -2.39 -0.02 1.76 16 26 H 0.08 2.49 8.10 -2.39 -0.02 2.47 16 27 H 0.08 2.46 8.10 -2.39 -0.02 2.44 16 28 H 0.13 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.13 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.43 5.64 8.46 -92.71 -0.78 4.86 16 31 H 0.14 3.33 5.79 -2.91 -0.02 3.32 16 32 H 0.15 1.52 8.06 -2.91 -0.02 1.49 16 33 H 0.17 0.68 8.06 -2.91 -0.02 0.66 16 34 H 0.16 1.24 8.06 -2.91 -0.02 1.21 16 Total: -1.00 -72.06 312.10 3.89 -68.17 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: 0.29 Total: 9.79 kcal Atomic # 6 Polarization: -23.95 SS G_CDS: 3.54 Total: -20.41 kcal Atomic # 7 Polarization: -70.52 SS G_CDS: -1.31 Total: -71.83 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: -0.04 Total: -16.46 kcal Atomic # 9 Polarization: -2.61 SS G_CDS: 0.76 Total: -1.85 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 1.88 Total: 45.32 kcal Atomic # 16 Polarization: -11.50 SS G_CDS: -1.22 Total: -12.72 kcal Total: -72.06 3.89 -68.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591134186.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.583 kcal (2) G-P(sol) polarization free energy of solvation -72.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds