Wall clock time and date at job start Tue Mar 31 2020 05:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34224 * 117.00233 * 2 1 4 4 O 1.20831 * 119.99930 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99997 * 180.27336 * 3 2 1 6 6 C 1.50705 * 109.47270 * 179.72807 * 5 3 2 7 7 S 1.70446 * 124.59294 * 270.02487 * 6 5 3 8 8 C 1.75507 * 92.44998 * 179.97438 * 7 6 5 9 9 C 1.32762 * 110.59326 * 0.02562 * 8 7 6 10 10 C 1.36095 * 124.59668 * 89.72363 * 6 5 3 11 11 C 1.47113 * 123.47067 * 0.02562 * 10 6 5 12 12 O 1.21668 * 119.99919 * 318.28663 * 11 10 6 13 13 N 1.34767 * 119.99881 * 138.28445 * 11 10 6 14 14 C 1.46503 * 120.00240 * 4.59481 * 13 11 10 15 15 C 1.36970 * 120.00287 * 184.58850 * 13 11 10 16 16 H 1.08010 * 119.99934 * 22.03732 * 15 13 11 17 17 C 1.38969 * 120.00599 * 202.03733 * 15 13 11 18 18 N 1.31416 * 119.99753 * 15.65673 * 17 15 13 19 19 Si 1.86799 * 120.00061 * 195.65983 * 17 15 13 20 20 H 1.48504 * 109.47147 * 94.98096 * 19 17 15 21 21 H 1.48506 * 109.47244 * 214.97870 * 19 17 15 22 22 H 1.48498 * 109.47580 * 334.97845 * 19 17 15 23 23 H 1.08994 * 109.47461 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.47027 * 299.99877 * 1 2 3 25 25 H 1.08999 * 109.46892 * 59.99508 * 1 2 3 26 26 H 1.09003 * 109.47298 * 299.72706 * 5 3 2 27 27 H 1.09000 * 109.47270 * 59.72858 * 5 3 2 28 28 H 1.08000 * 124.70267 * 179.97438 * 8 7 6 29 29 H 1.08002 * 123.45171 * 180.02562 * 9 8 7 30 30 H 1.08993 * 109.47571 * 84.85750 * 14 13 11 31 31 H 1.09000 * 109.47337 * 204.85993 * 14 13 11 32 32 H 1.08997 * 109.46751 * 324.85890 * 14 13 11 33 33 H 0.97003 * 119.99743 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2747 -0.0062 6 6 3.9937 2.7199 -0.0117 7 16 4.2619 3.6444 -1.4182 8 6 4.6867 5.0720 -0.4899 9 6 4.6174 4.8202 0.8118 10 6 4.2121 3.4653 1.1058 11 6 4.0560 2.9436 2.4725 12 8 3.1125 2.2256 2.7454 13 7 4.9581 3.2610 3.4220 14 6 6.0372 4.2051 3.1210 15 6 4.8661 2.7011 4.6687 16 1 4.3296 1.7737 4.8059 17 6 5.4629 3.3260 5.7570 18 7 5.8432 4.5807 5.6670 19 14 5.7247 2.3825 7.3478 20 1 7.0984 1.8188 7.3687 21 1 5.5487 3.3000 8.5022 22 1 4.7353 1.2788 7.4374 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 3.9597 0.7829 0.8835 27 1 3.9525 0.7783 -0.8965 28 1 4.9666 6.0231 -0.9181 29 1 4.8366 5.5546 1.5728 30 1 5.6790 5.2244 3.2653 31 1 6.8796 4.0184 3.7870 32 1 6.3558 4.0749 2.0868 33 1 6.2595 5.0170 6.4268 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601024076.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:40 Heat of formation + Delta-G solvation = -72.890733 kcal Electronic energy + Delta-G solvation = -20261.121601 eV Core-core repulsion = 16993.661632 eV Total energy + Delta-G solvation = -3267.459969 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -40.12917 -38.90942 -36.48792 -35.90510 -34.71337 -32.19146 -31.53794 -28.22763 -26.99310 -26.31700 -24.66831 -23.16972 -20.87949 -20.50868 -18.29278 -17.35153 -17.18189 -16.80295 -16.15578 -15.94793 -15.56013 -14.93412 -14.27167 -13.97298 -13.73702 -13.52449 -13.31970 -12.65766 -12.57171 -12.32651 -12.13893 -11.78981 -11.54394 -11.47918 -11.32647 -11.12766 -10.90377 -10.57307 -10.53299 -10.37085 -10.32276 -10.14883 -9.04578 -8.55675 -8.44195 -7.87624 -7.72021 -6.40067 -3.89932 1.21799 1.89763 2.27367 2.62539 2.67003 3.09491 3.18504 3.22914 3.28839 4.10567 4.14092 4.78704 4.93796 5.08525 5.14366 5.24364 5.32978 5.35363 5.38884 5.66589 5.81035 5.87364 5.92275 6.32175 6.35455 6.50160 6.67419 6.75558 6.81007 7.15568 7.51157 8.08658 8.12296 8.44418 9.13343 9.36142 9.95393 10.64699 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.017590 B = 0.006102 C = 0.004750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.387443 B = 4587.671600 C = 5893.230953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.364 6.364 3 C 0.474 3.526 4 O -0.491 6.491 5 C -0.032 4.032 6 C -0.179 4.179 7 S 0.141 5.859 8 C -0.230 4.230 9 C -0.104 4.104 10 C -0.095 4.095 11 C 0.492 3.508 12 O -0.582 6.582 13 N -0.430 5.430 14 C 0.108 3.892 15 C -0.303 4.303 16 H 0.101 0.899 17 C 0.031 3.969 18 N -0.874 5.874 19 Si 0.927 3.073 20 H -0.277 1.277 21 H -0.283 1.283 22 H -0.268 1.268 23 H 0.097 0.903 24 H 0.063 0.937 25 H 0.058 0.942 26 H 0.127 0.873 27 H 0.107 0.893 28 H 0.164 0.836 29 H 0.153 0.847 30 H 0.052 0.948 31 H 0.076 0.924 32 H 0.033 0.967 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.464 -2.993 -12.948 13.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.281 6.281 3 C 0.316 3.684 4 O -0.376 6.376 5 C -0.071 4.071 6 C -0.299 4.299 7 S 0.407 5.593 8 C -0.365 4.365 9 C -0.135 4.135 10 C -0.112 4.112 11 C 0.279 3.721 12 O -0.467 6.467 13 N -0.147 5.147 14 C -0.036 4.036 15 C -0.431 4.431 16 H 0.119 0.881 17 C -0.173 4.173 18 N -0.513 5.513 19 Si 0.754 3.246 20 H -0.203 1.203 21 H -0.209 1.209 22 H -0.192 1.192 23 H 0.115 0.885 24 H 0.082 0.918 25 H 0.077 0.923 26 H 0.145 0.855 27 H 0.126 0.874 28 H 0.181 0.819 29 H 0.171 0.829 30 H 0.070 0.930 31 H 0.094 0.906 32 H 0.051 0.949 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.133 -3.166 -14.199 14.592 hybrid contribution 0.108 0.323 2.508 2.531 sum -1.024 -2.844 -11.691 12.075 Atomic orbital electron populations 1.23180 0.76786 1.03127 1.02464 1.86454 1.23121 1.33738 1.84780 1.23294 0.91484 0.81309 0.72341 1.90655 1.66747 1.36182 1.44008 1.19581 0.88711 0.92489 1.06368 1.23393 1.09899 0.99287 0.97280 1.82498 1.66473 1.02247 1.08086 1.25292 1.11681 1.02347 0.97133 1.21539 0.99911 0.95888 0.96116 1.20585 1.02067 0.93465 0.95085 1.17330 0.84089 0.86793 0.83888 1.90634 1.31956 1.42360 1.81782 1.43507 1.22564 1.38383 1.10273 1.21693 0.91729 0.93078 0.97094 1.19713 1.34276 1.06202 0.82951 0.88113 1.25363 0.97363 0.95167 0.99431 1.70026 1.39688 1.09388 1.32197 0.85890 0.78809 0.79382 0.80554 1.20301 1.20877 1.19224 0.88487 0.91775 0.92328 0.85499 0.87449 0.81852 0.82933 0.93001 0.90577 0.94854 0.92084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 10.56 101.05 1.07 1.56 16 2 O -0.36 -5.91 10.56 -39.24 -0.41 -6.32 16 3 C 0.47 8.80 7.55 36.00 0.27 9.07 16 4 O -0.49 -10.53 15.78 -18.75 -0.30 -10.82 16 5 C -0.03 -0.54 5.51 -29.03 -0.16 -0.70 16 6 C -0.18 -3.26 4.83 -35.08 -0.17 -3.43 16 7 S 0.14 2.03 22.97 -107.50 -2.47 -0.44 16 8 C -0.23 -3.36 11.12 28.86 0.32 -3.04 16 9 C -0.10 -1.87 8.13 -39.02 -0.32 -2.18 16 10 C -0.09 -1.99 5.14 -104.63 -0.54 -2.53 16 11 C 0.49 12.54 6.92 -12.66 -0.09 12.45 16 12 O -0.58 -16.57 15.23 5.22 0.08 -16.49 16 13 N -0.43 -11.18 3.01 -123.53 -0.37 -11.55 16 14 C 0.11 2.42 7.33 59.85 0.44 2.86 16 15 C -0.30 -8.44 9.25 -14.99 -0.14 -8.58 16 16 H 0.10 2.92 7.46 -52.48 -0.39 2.53 16 17 C 0.03 0.81 4.98 -17.46 -0.09 0.72 16 18 N -0.87 -23.10 10.86 55.50 0.60 -22.50 16 19 Si 0.93 20.52 29.58 -169.99 -5.03 15.49 16 20 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 21 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 23 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.06 0.90 8.13 -51.93 -0.42 0.48 16 25 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 26 H 0.13 2.29 7.24 -51.93 -0.38 1.91 16 27 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 28 H 0.16 1.83 8.06 -52.49 -0.42 1.41 16 29 H 0.15 2.68 6.18 -52.49 -0.32 2.35 16 30 H 0.05 1.17 6.86 -51.93 -0.36 0.82 16 31 H 0.08 1.79 6.65 -51.93 -0.35 1.44 16 32 H 0.03 0.65 6.01 -51.93 -0.31 0.33 16 33 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 LS Contribution 299.95 15.07 4.52 4.52 Total: -1.00 -33.45 299.95 -6.13 -39.58 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -3.35 Total: 2.33 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: 0.60 Total: 6.20 kcal Atomic # 7 Polarization: -34.28 SS G_CDS: 0.23 Total: -34.05 kcal Atomic # 8 Polarization: -33.01 SS G_CDS: -0.63 Total: -33.64 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.03 Total: 15.49 kcal Atomic # 16 Polarization: 2.03 SS G_CDS: -2.47 Total: -0.44 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -33.45 -6.13 -39.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601024076.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.307 kcal (2) G-P(sol) polarization free energy of solvation -33.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds