Wall clock time and date at job start Tue Mar 31 2020 05:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86789 * 120.00192 * 2 1 4 4 H 1.48503 * 109.47675 * 270.00089 * 3 2 1 5 5 H 1.48501 * 109.47162 * 30.00262 * 3 2 1 6 6 H 1.48503 * 109.47180 * 149.99955 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47460 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47555 * 180.02562 * 10 9 7 12 12 C 1.34777 * 120.00199 * 180.02562 * 11 10 9 13 13 O 1.21283 * 119.99750 * 359.97438 * 12 11 10 14 14 C 1.50702 * 119.99928 * 180.27479 * 12 11 10 15 15 C 1.50700 * 109.46869 * 179.72354 * 14 12 11 16 16 C 1.38279 * 119.93762 * 269.72106 * 15 14 12 17 17 C 1.38152 * 120.07551 * 179.72726 * 16 15 14 18 18 C 1.38708 * 119.95271 * 0.54926 * 17 16 15 19 19 O 1.35930 * 120.05420 * 179.70290 * 18 17 16 20 20 C 1.38805 * 119.88652 * 359.72703 * 18 17 16 21 21 Cl 1.73606 * 120.04265 * 179.97438 * 20 18 17 22 22 C 1.38242 * 119.94000 * 90.00074 * 15 14 12 23 23 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47044 * 59.99820 * 9 7 2 25 25 H 1.09005 * 109.46730 * 299.99869 * 9 7 2 26 26 H 1.08998 * 109.47382 * 59.99730 * 10 9 7 27 27 H 1.09002 * 109.47216 * 300.00167 * 10 9 7 28 28 H 0.97000 * 119.99484 * 359.97438 * 11 10 9 29 29 H 1.09004 * 109.46965 * 299.72211 * 14 12 11 30 30 H 1.08994 * 109.46990 * 59.72065 * 14 12 11 31 31 H 1.08000 * 119.96270 * 0.02562 * 16 15 14 32 32 H 1.07994 * 120.02507 * 180.27424 * 17 16 15 33 33 H 0.96695 * 114.00285 * 270.01999 * 19 18 17 34 34 H 1.07995 * 119.98194 * 359.97079 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 7 1.5125 -4.9309 -0.0012 12 6 2.1863 -6.0981 -0.0007 13 8 3.3992 -6.0981 -0.0003 14 6 1.4327 -7.4032 -0.0076 15 6 2.4120 -8.5486 -0.0125 16 6 2.8569 -9.0711 -1.2131 17 6 3.7589 -10.1174 -1.2209 18 6 4.2101 -10.6518 -0.0230 19 8 5.0930 -11.6854 -0.0284 20 6 3.7580 -10.1298 1.1810 21 17 4.3194 -10.7961 2.6826 22 6 2.8595 -9.0789 1.1831 23 1 -0.4850 0.8401 0.0004 24 1 0.6239 -2.5567 -0.8903 25 1 0.6246 -2.5570 0.8898 26 1 2.8717 -3.6045 0.8894 27 1 2.8717 -3.6045 -0.8905 28 1 0.5425 -4.9308 -0.0011 29 1 0.8055 -7.4652 0.8817 30 1 0.8067 -7.4565 -0.8983 31 1 2.5024 -8.6575 -2.1457 32 1 4.1092 -10.5219 -2.1590 33 1 4.6768 -12.5582 -0.0332 34 1 2.5075 -8.6717 2.1194 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601428989.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:31 Heat of formation + Delta-G solvation = -102.471922 kcal Electronic energy + Delta-G solvation = -18666.103457 eV Core-core repulsion = 15395.317045 eV Total energy + Delta-G solvation = -3270.786412 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.19878 -40.26289 -37.89603 -37.47877 -36.51969 -34.80052 -33.16520 -31.84209 -31.43474 -28.29022 -26.40488 -23.95612 -23.34338 -22.59356 -21.32717 -19.52185 -18.59778 -17.94363 -17.38608 -17.30314 -16.55543 -16.42231 -16.34922 -16.19750 -15.05112 -14.92732 -14.74064 -14.67928 -14.29602 -13.77182 -13.44773 -13.21979 -13.04630 -12.92709 -12.59640 -12.51563 -12.38333 -12.20669 -12.07260 -11.65708 -11.52627 -11.45828 -10.85295 -10.60207 -9.97653 -9.88808 -9.50526 -8.24494 -6.34530 0.02940 0.18145 1.09621 1.41646 1.41889 1.53323 1.71962 2.22125 2.41633 2.68505 3.10407 3.12319 3.60465 3.80589 4.04744 4.19137 4.23966 4.40327 4.50768 4.54632 4.62349 4.72000 4.87052 4.88560 5.04633 5.19165 5.32422 5.44978 5.51700 5.60092 5.69142 5.79957 6.17265 6.69139 6.73686 6.78998 7.34823 7.35607 8.87200 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.035029 B = 0.002686 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.156986 B =10422.542016 C =10618.439601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.008 3.992 3 Si 0.963 3.037 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.268 1.268 7 C -0.548 4.548 8 H 0.056 0.944 9 C 0.023 3.977 10 C 0.141 3.859 11 N -0.717 5.717 12 C 0.504 3.496 13 O -0.588 6.588 14 C -0.092 4.092 15 C -0.070 4.070 16 C -0.089 4.089 17 C -0.135 4.135 18 C 0.108 3.892 19 O -0.497 6.497 20 C -0.079 4.079 21 Cl -0.065 7.065 22 C -0.094 4.094 23 H 0.266 0.734 24 H 0.011 0.989 25 H 0.009 0.991 26 H 0.041 0.959 27 H 0.044 0.956 28 H 0.413 0.587 29 H 0.132 0.868 30 H 0.140 0.860 31 H 0.152 0.848 32 H 0.159 0.841 33 H 0.410 0.590 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.835 -24.617 -0.862 24.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.191 4.191 3 Si 0.787 3.213 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.587 4.587 8 H 0.074 0.926 9 C -0.014 4.014 10 C 0.017 3.983 11 N -0.369 5.369 12 C 0.292 3.708 13 O -0.469 6.469 14 C -0.132 4.132 15 C -0.071 4.071 16 C -0.107 4.107 17 C -0.153 4.153 18 C 0.062 3.938 19 O -0.310 6.310 20 C -0.106 4.106 21 Cl -0.036 7.036 22 C -0.113 4.113 23 H 0.075 0.925 24 H 0.029 0.971 25 H 0.028 0.972 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.249 0.751 29 H 0.150 0.850 30 H 0.158 0.842 31 H 0.170 0.830 32 H 0.176 0.824 33 H 0.269 0.731 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.010 -24.125 -0.715 24.219 hybrid contribution -0.244 0.702 0.334 0.815 sum 1.766 -23.423 -0.382 23.492 Atomic orbital electron populations 1.70048 1.07446 1.27992 1.51014 1.25838 0.95793 1.02981 0.94440 0.85481 0.78626 0.78632 0.78540 1.19730 1.20461 1.19242 1.21487 0.93524 0.92146 1.51525 0.92567 1.19124 0.94202 0.91625 0.96458 1.21168 0.95018 0.82642 0.99501 1.46139 1.11204 1.05415 1.74132 1.21278 0.87956 0.86305 0.75225 1.90703 1.16228 1.88377 1.51590 1.20742 0.97021 0.86725 1.08673 1.19463 0.98612 0.96194 0.92813 1.21325 0.95828 0.94962 0.98539 1.21590 0.97524 0.98314 0.97918 1.18320 0.92003 0.92725 0.90764 1.84815 1.32931 1.17071 1.96216 1.21497 1.01338 1.00519 0.87269 1.98356 1.88676 1.84917 1.31692 1.21000 0.96228 0.94566 0.99487 0.92516 0.97077 0.97230 0.94045 0.93796 0.75057 0.84961 0.84166 0.83043 0.82350 0.73050 0.84269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.65 13.29 21.45 0.28 -53.37 16 2 C 0.01 0.47 5.46 84.66 0.46 0.93 16 3 Si 0.96 43.42 29.54 68.60 2.03 45.45 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.55 -30.47 9.11 25.60 0.23 -30.23 16 8 H 0.06 3.08 7.74 -2.91 -0.02 3.06 16 9 C 0.02 1.15 5.09 29.85 0.15 1.30 16 10 C 0.14 5.91 5.61 86.38 0.48 6.39 16 11 N -0.72 -22.76 5.56 -463.06 -2.57 -25.33 16 12 C 0.50 15.12 7.82 87.66 0.69 15.81 16 13 O -0.59 -23.44 16.03 -3.04 -0.05 -23.49 16 14 C -0.09 -1.66 5.83 29.10 0.17 -1.49 16 15 C -0.07 -1.46 4.37 -19.85 -0.09 -1.54 16 16 C -0.09 -1.66 9.69 22.26 0.22 -1.44 16 17 C -0.14 -2.44 9.99 22.36 0.22 -2.22 16 18 C 0.11 2.20 6.70 22.52 0.15 2.35 16 19 O -0.50 -8.72 12.96 -92.76 -1.20 -9.92 16 20 C -0.08 -1.79 6.33 22.41 0.14 -1.64 16 21 Cl -0.07 -1.41 28.51 -2.72 -0.08 -1.49 16 22 C -0.09 -2.10 9.48 22.28 0.21 -1.89 16 23 H 0.27 14.49 8.31 -92.70 -0.77 13.71 16 24 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 25 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 26 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.41 10.61 8.47 -92.71 -0.79 9.83 16 29 H 0.13 1.69 8.08 -2.38 -0.02 1.67 16 30 H 0.14 1.60 8.08 -2.39 -0.02 1.58 16 31 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 32 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 33 H 0.41 3.05 9.06 -74.06 -0.67 2.38 16 34 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 Total: -1.00 -72.73 319.18 1.14 -71.60 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -0.32 Total: 10.23 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: 3.04 Total: -13.67 kcal Atomic # 7 Polarization: -76.42 SS G_CDS: -2.29 Total: -78.70 kcal Atomic # 8 Polarization: -32.16 SS G_CDS: -1.25 Total: -33.41 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Atomic # 17 Polarization: -1.41 SS G_CDS: -0.08 Total: -1.49 kcal Total: -72.73 1.14 -71.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601428989.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.877 kcal (2) G-P(sol) polarization free energy of solvation -72.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds