Wall clock time and date at job start Tue Mar 31 2020 05:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86794 * 120.00564 * 2 1 4 4 H 1.48500 * 109.47221 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46855 * 300.00279 * 3 2 1 6 6 H 1.48503 * 109.47244 * 59.99965 * 3 2 1 7 7 C 1.37882 * 119.99723 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99951 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99776 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47210 * 179.97438 * 9 7 2 11 11 S 1.81397 * 109.47293 * 179.97438 * 10 9 7 12 12 O 1.42105 * 110.54189 * 68.37430 * 11 10 9 13 13 O 1.42099 * 110.54203 * 291.62169 * 11 10 9 14 14 N 1.65608 * 104.44917 * 179.97438 * 11 10 9 15 15 C 1.46927 * 120.63047 * 269.72011 * 14 11 10 16 16 C 1.53626 * 108.53906 * 126.36616 * 15 14 11 17 17 C 1.53041 * 109.24183 * 54.85853 * 16 15 14 18 18 F 1.39896 * 109.46164 * 178.48567 * 17 16 15 19 19 F 1.39909 * 109.44828 * 58.51969 * 17 16 15 20 20 C 1.53036 * 109.53807 * 298.50777 * 17 16 15 21 21 C 1.46923 * 120.62912 * 89.99778 * 14 11 10 22 22 H 0.97001 * 119.99602 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.47782 * 59.99535 * 9 7 2 24 24 H 1.09001 * 109.46939 * 299.99641 * 9 7 2 25 25 H 1.09001 * 109.47069 * 59.99171 * 10 9 7 26 26 H 1.09001 * 109.46935 * 299.99716 * 10 9 7 27 27 H 1.08998 * 109.58645 * 246.19941 * 15 14 11 28 28 H 1.09001 * 109.58579 * 6.63098 * 15 14 11 29 29 H 1.08990 * 109.63926 * 294.86483 * 16 15 14 30 30 H 1.09005 * 109.42826 * 174.72267 * 16 15 14 31 31 H 1.09001 * 109.49825 * 301.41219 * 20 17 16 32 32 H 1.09002 * 109.49833 * 181.31508 * 20 17 16 33 33 H 1.09007 * 109.58781 * 353.37587 * 21 14 11 34 34 H 1.08998 * 109.58580 * 113.65404 * 21 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3461 -0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2508 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 16 1.3379 -5.2331 0.0013 12 8 0.6634 -5.4200 -1.2354 13 8 0.6643 -5.4193 1.2386 14 7 2.5200 -6.3929 0.0005 15 6 3.0491 -6.9216 -1.2641 16 6 4.5787 -6.7791 -1.2512 17 6 5.1384 -7.4625 -0.0015 18 9 6.5340 -7.3654 -0.0026 19 9 4.7650 -8.8108 -0.0010 20 6 4.5808 -6.7786 1.2489 21 6 3.0553 -6.9170 1.2644 22 1 -0.4849 0.8401 0.0004 23 1 0.6244 -2.5571 -0.8896 24 1 0.6239 -2.5567 0.8903 25 1 2.8717 -3.6045 0.8904 26 1 2.8716 -3.6045 -0.8895 27 1 2.7781 -7.9728 -1.3625 28 1 2.6350 -6.3556 -2.0985 29 1 4.8481 -5.7231 -1.2399 30 1 4.9944 -7.2516 -2.1412 31 1 4.8502 -5.7225 1.2367 32 1 4.9980 -7.2507 2.1384 33 1 2.6452 -6.3480 2.0989 34 1 2.7826 -7.9671 1.3692 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619506100.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:01 Heat of formation + Delta-G solvation = -185.286470 kcal Electronic energy + Delta-G solvation = -21224.159917 eV Core-core repulsion = 17533.429668 eV Total energy + Delta-G solvation = -3690.730249 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.084 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.14445 -47.13481 -38.05117 -36.78312 -35.54627 -33.95336 -31.71256 -31.65219 -31.21869 -25.68885 -24.46601 -24.05918 -21.81601 -20.68540 -18.86368 -17.98013 -17.36560 -16.76418 -16.55946 -16.15517 -16.12556 -15.57884 -14.77806 -14.61343 -14.59563 -13.98060 -13.51830 -13.50025 -13.22512 -13.03059 -12.94494 -12.66437 -12.57194 -12.06801 -11.82694 -11.73741 -11.69309 -11.55750 -11.13771 -11.08796 -11.01159 -10.65956 -10.45712 -10.45465 -9.86290 -9.44923 -8.96655 -8.55449 -6.17335 -4.23201 0.61909 2.83128 3.22018 3.29635 3.32573 3.54454 3.83378 4.04039 4.13415 4.25992 4.34877 4.38157 4.66703 4.67262 4.90379 5.18102 5.21995 5.28091 5.29077 5.35113 5.44145 5.52767 5.60726 5.65429 5.79737 5.89415 6.40614 6.43226 7.23873 7.29424 7.75628 8.11786 8.80479 9.42081 10.93700 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.023563 B = 0.004849 C = 0.004345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.028611 B = 5772.991747 C = 6443.119923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.521 4.521 8 H 0.062 0.938 9 C 0.027 3.973 10 C -0.588 4.588 11 S 2.589 3.411 12 O -0.961 6.961 13 O -0.961 6.961 14 N -1.010 6.010 15 C 0.124 3.876 16 C -0.177 4.177 17 C 0.291 3.709 18 F -0.203 7.203 19 F -0.199 7.199 20 C -0.176 4.176 21 C 0.124 3.876 22 H 0.265 0.735 23 H 0.033 0.967 24 H 0.034 0.966 25 H 0.119 0.881 26 H 0.119 0.881 27 H 0.080 0.920 28 H 0.107 0.893 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.223 -14.606 -0.001 17.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.560 4.560 8 H 0.080 0.920 9 C -0.012 4.012 10 C -0.722 4.722 11 S 2.688 3.312 12 O -0.951 6.951 13 O -0.951 6.951 14 N -0.846 5.846 15 C -0.002 4.002 16 C -0.216 4.216 17 C 0.255 3.745 18 F -0.184 7.184 19 F -0.180 7.180 20 C -0.216 4.216 21 C -0.002 4.002 22 H 0.075 0.925 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.138 0.862 26 H 0.138 0.862 27 H 0.098 0.902 28 H 0.125 0.875 29 H 0.121 0.879 30 H 0.117 0.883 31 H 0.121 0.879 32 H 0.117 0.883 33 H 0.125 0.875 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 9.137 -14.761 0.000 17.360 hybrid contribution 1.306 1.123 0.000 1.722 sum 10.443 -13.638 0.000 17.177 Atomic orbital electron populations 1.69961 1.06133 1.27158 1.49527 1.25068 0.94966 0.99572 0.94845 0.86417 0.79910 0.83159 0.77816 1.19655 1.20768 1.20761 1.21026 0.93069 0.89711 1.52208 0.91997 1.18978 0.92694 0.90564 0.98921 1.30504 1.13691 1.17960 1.10039 1.05859 0.74829 0.76335 0.74204 1.93543 1.71081 1.85176 1.45298 1.93543 1.71106 1.85184 1.45260 1.58149 1.59214 1.56352 1.10869 1.21422 0.90950 1.01532 0.86269 1.23056 0.98112 1.03588 0.96873 1.20997 0.75853 0.78724 0.98909 1.93014 1.31544 1.96120 1.97709 1.92996 1.91148 1.36192 1.97705 1.22977 0.98124 1.03606 0.96900 1.21324 0.90972 1.01619 0.86287 0.92530 0.94827 0.94817 0.86230 0.86219 0.90152 0.87493 0.87899 0.88320 0.87910 0.88285 0.87531 0.90187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.00 13.29 55.43 0.74 -25.26 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -13.98 9.11 -34.44 -0.31 -14.29 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 9 C 0.03 0.68 4.98 -27.88 -0.14 0.54 16 10 C -0.59 -10.49 6.12 37.16 0.23 -10.26 16 11 S 2.59 43.63 5.41 -107.50 -0.58 43.05 16 12 O -0.96 -18.78 16.71 -57.54 -0.96 -19.74 16 13 O -0.96 -18.78 16.73 -57.54 -0.96 -19.74 16 14 N -1.01 -12.54 3.21 -113.27 -0.36 -12.90 16 15 C 0.12 1.30 6.14 -3.48 -0.02 1.28 16 16 C -0.18 -1.58 5.64 -26.38 -0.15 -1.72 16 17 C 0.29 2.91 2.10 -26.69 -0.06 2.86 16 18 F -0.20 -2.27 17.06 2.25 0.04 -2.23 16 19 F -0.20 -2.22 16.10 2.25 0.04 -2.18 16 20 C -0.18 -1.57 5.62 -26.61 -0.15 -1.72 16 21 C 0.12 1.30 6.10 -3.71 -0.02 1.27 16 22 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 23 H 0.03 0.88 8.14 -51.93 -0.42 0.45 16 24 H 0.03 0.88 8.14 -51.93 -0.42 0.45 16 25 H 0.12 1.88 8.14 -51.92 -0.42 1.46 16 26 H 0.12 1.88 8.14 -51.92 -0.42 1.46 16 27 H 0.08 0.78 7.92 -51.93 -0.41 0.37 16 28 H 0.11 1.11 7.09 -51.93 -0.37 0.75 16 29 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.11 1.11 7.10 -51.93 -0.37 0.74 16 34 H 0.08 0.78 7.93 -51.93 -0.41 0.37 16 LS Contribution 301.85 15.07 4.55 4.55 Total: -1.00 -33.73 301.85 -7.73 -41.47 By element: Atomic # 1 Polarization: 2.26 SS G_CDS: -4.48 Total: -2.22 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: -0.72 Total: -20.55 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: 0.37 Total: -38.17 kcal Atomic # 8 Polarization: -37.56 SS G_CDS: -1.92 Total: -39.48 kcal Atomic # 9 Polarization: -4.49 SS G_CDS: 0.07 Total: -4.41 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: 43.63 SS G_CDS: -0.58 Total: 43.05 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -33.73 -7.73 -41.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619506100.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.819 kcal (2) G-P(sol) polarization free energy of solvation -33.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds