Wall clock time and date at job start Tue Mar 31 2020 05:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86794 * 120.00564 * 2 1 4 4 H 1.48500 * 109.47221 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46855 * 300.00279 * 3 2 1 6 6 H 1.48503 * 109.47244 * 59.99965 * 3 2 1 7 7 C 1.37882 * 119.99723 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99951 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99776 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47210 * 179.97438 * 9 7 2 11 11 S 1.81397 * 109.47293 * 179.97438 * 10 9 7 12 12 O 1.42105 * 110.54189 * 68.37430 * 11 10 9 13 13 O 1.42099 * 110.54203 * 291.62169 * 11 10 9 14 14 N 1.65608 * 104.44917 * 179.97438 * 11 10 9 15 15 C 1.46927 * 120.63047 * 269.72011 * 14 11 10 16 16 C 1.53626 * 108.53906 * 126.36616 * 15 14 11 17 17 C 1.53041 * 109.24183 * 54.85853 * 16 15 14 18 18 F 1.39896 * 109.46164 * 178.48567 * 17 16 15 19 19 F 1.39909 * 109.44828 * 58.51969 * 17 16 15 20 20 C 1.53036 * 109.53807 * 298.50777 * 17 16 15 21 21 C 1.46923 * 120.62912 * 89.99778 * 14 11 10 22 22 H 0.97001 * 119.99602 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.47782 * 59.99535 * 9 7 2 24 24 H 1.09001 * 109.46939 * 299.99641 * 9 7 2 25 25 H 1.09001 * 109.47069 * 59.99171 * 10 9 7 26 26 H 1.09001 * 109.46935 * 299.99716 * 10 9 7 27 27 H 1.08998 * 109.58645 * 246.19941 * 15 14 11 28 28 H 1.09001 * 109.58579 * 6.63098 * 15 14 11 29 29 H 1.08990 * 109.63926 * 294.86483 * 16 15 14 30 30 H 1.09005 * 109.42826 * 174.72267 * 16 15 14 31 31 H 1.09001 * 109.49825 * 301.41219 * 20 17 16 32 32 H 1.09002 * 109.49833 * 181.31508 * 20 17 16 33 33 H 1.09007 * 109.58781 * 353.37587 * 21 14 11 34 34 H 1.08998 * 109.58580 * 113.65404 * 21 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3461 -0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2508 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 16 1.3379 -5.2331 0.0013 12 8 0.6634 -5.4200 -1.2354 13 8 0.6643 -5.4193 1.2386 14 7 2.5200 -6.3929 0.0005 15 6 3.0491 -6.9216 -1.2641 16 6 4.5787 -6.7791 -1.2512 17 6 5.1384 -7.4625 -0.0015 18 9 6.5340 -7.3654 -0.0026 19 9 4.7650 -8.8108 -0.0010 20 6 4.5808 -6.7786 1.2489 21 6 3.0553 -6.9170 1.2644 22 1 -0.4849 0.8401 0.0004 23 1 0.6244 -2.5571 -0.8896 24 1 0.6239 -2.5567 0.8903 25 1 2.8717 -3.6045 0.8904 26 1 2.8716 -3.6045 -0.8895 27 1 2.7781 -7.9728 -1.3625 28 1 2.6350 -6.3556 -2.0985 29 1 4.8481 -5.7231 -1.2399 30 1 4.9944 -7.2516 -2.1412 31 1 4.8502 -5.7225 1.2367 32 1 4.9980 -7.2507 2.1384 33 1 2.6452 -6.3480 2.0989 34 1 2.7826 -7.9671 1.3692 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619506100.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:00 Heat of formation + Delta-G solvation = -208.927583 kcal Electronic energy + Delta-G solvation = -21225.185072 eV Core-core repulsion = 17533.429668 eV Total energy + Delta-G solvation = -3691.755405 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.084 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.93614 -47.93741 -38.92397 -38.25089 -37.02165 -35.88176 -33.11474 -32.57216 -32.42432 -27.59343 -25.38424 -24.83815 -23.55610 -21.62256 -19.99965 -19.27358 -18.55749 -18.15156 -17.44448 -17.29800 -17.19214 -16.90129 -16.50319 -15.92816 -15.50071 -15.10719 -14.79154 -14.49725 -14.35198 -14.14395 -13.83667 -13.79646 -13.71721 -13.45339 -13.18075 -13.12179 -12.97815 -12.94649 -12.77428 -12.39952 -12.23989 -12.11014 -12.03039 -11.70736 -11.42434 -11.15303 -10.64740 -10.12384 -8.25398 -6.39018 -0.74766 1.42181 1.42353 1.55403 1.66360 2.38659 2.79783 2.84646 3.07136 3.08916 3.19148 3.30594 3.44130 3.74871 3.82164 4.08288 4.13119 4.21045 4.49943 4.53779 4.56650 4.62481 4.73062 4.77670 4.91658 4.99020 5.07392 5.28350 5.30128 5.50393 5.69793 6.07233 6.75431 7.31508 8.87034 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.023563 B = 0.004849 C = 0.004345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.028611 B = 5772.991747 C = 6443.119923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.972 3.028 4 H -0.255 1.255 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.536 4.536 8 H 0.077 0.923 9 C 0.019 3.981 10 C -0.586 4.586 11 S 2.613 3.387 12 O -0.991 6.991 13 O -0.991 6.991 14 N -1.000 6.000 15 C 0.117 3.883 16 C -0.173 4.173 17 C 0.286 3.714 18 F -0.209 7.209 19 F -0.207 7.207 20 C -0.173 4.173 21 C 0.116 3.884 22 H 0.267 0.733 23 H 0.006 0.994 24 H 0.006 0.994 25 H 0.144 0.856 26 H 0.144 0.856 27 H 0.089 0.911 28 H 0.107 0.893 29 H 0.114 0.886 30 H 0.116 0.884 31 H 0.114 0.886 32 H 0.116 0.884 33 H 0.107 0.893 34 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.648 -14.878 0.001 19.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.202 4.202 3 Si 0.796 3.204 4 H -0.178 1.178 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.575 4.575 8 H 0.095 0.905 9 C -0.020 4.020 10 C -0.718 4.718 11 S 2.712 3.288 12 O -0.981 6.981 13 O -0.981 6.981 14 N -0.838 5.838 15 C -0.008 4.008 16 C -0.213 4.213 17 C 0.250 3.750 18 F -0.190 7.190 19 F -0.189 7.189 20 C -0.213 4.213 21 C -0.009 4.009 22 H 0.076 0.924 23 H 0.024 0.976 24 H 0.024 0.976 25 H 0.162 0.838 26 H 0.162 0.838 27 H 0.108 0.892 28 H 0.125 0.875 29 H 0.132 0.868 30 H 0.134 0.866 31 H 0.132 0.868 32 H 0.135 0.865 33 H 0.125 0.875 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 11.576 -15.034 0.001 18.974 hybrid contribution 0.569 1.089 0.000 1.229 sum 12.144 -13.945 0.001 18.492 Atomic orbital electron populations 1.70105 1.08086 1.28214 1.51076 1.26090 0.95794 1.03817 0.94474 0.85293 0.79242 0.78185 0.77703 1.17841 1.20529 1.20516 1.21552 0.94018 0.90711 1.51187 0.90474 1.18832 0.93667 0.93131 0.96349 1.30393 1.12709 1.16164 1.12540 1.04818 0.74920 0.76283 0.72797 1.93498 1.72461 1.85647 1.46521 1.93498 1.72486 1.85656 1.46486 1.57748 1.58631 1.54802 1.12631 1.21655 0.92144 1.01913 0.85120 1.23070 0.96530 1.04434 0.97250 1.21203 0.75518 0.78437 0.99827 1.93002 1.32141 1.96128 1.97777 1.92984 1.91178 1.36914 1.97780 1.22992 0.96549 1.04454 0.97275 1.21557 0.92159 1.02003 0.85140 0.92447 0.97573 0.97564 0.83760 0.83752 0.89237 0.87474 0.86799 0.86575 0.86805 0.86531 0.87499 0.89277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.95 13.29 21.45 0.28 -55.67 16 2 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 3 Si 0.97 42.28 29.54 68.60 2.03 44.30 16 4 H -0.25 -10.28 7.11 99.48 0.71 -9.57 16 5 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 6 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.54 -28.65 9.11 25.60 0.23 -28.41 16 8 H 0.08 3.78 7.74 -2.91 -0.02 3.76 16 9 C 0.02 0.96 4.98 29.85 0.15 1.11 16 10 C -0.59 -20.25 6.12 71.98 0.44 -19.81 16 11 S 2.61 86.89 5.41 -56.49 -0.31 86.58 16 12 O -0.99 -38.87 16.71 -127.65 -2.13 -41.00 16 13 O -0.99 -38.88 16.73 -127.65 -2.14 -41.01 16 14 N -1.00 -22.95 3.21 -512.29 -1.65 -24.60 16 15 C 0.12 2.18 6.14 86.51 0.53 2.71 16 16 C -0.17 -2.57 5.64 30.82 0.17 -2.40 16 17 C 0.29 4.90 2.10 30.62 0.06 4.96 16 18 F -0.21 -4.12 17.06 44.97 0.77 -3.35 16 19 F -0.21 -4.10 16.10 44.97 0.72 -3.38 16 20 C -0.17 -2.57 5.62 30.67 0.17 -2.39 16 21 C 0.12 2.17 6.10 86.36 0.53 2.70 16 22 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 23 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 24 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 25 H 0.14 4.22 8.14 -2.39 -0.02 4.20 16 26 H 0.14 4.22 8.14 -2.39 -0.02 4.20 16 27 H 0.09 1.55 7.92 -2.39 -0.02 1.53 16 28 H 0.11 2.04 7.09 -2.39 -0.02 2.02 16 29 H 0.11 1.46 8.14 -2.39 -0.02 1.45 16 30 H 0.12 1.35 8.14 -2.38 -0.02 1.33 16 31 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.11 2.03 7.10 -2.38 -0.02 2.01 16 34 H 0.09 1.54 7.93 -2.39 -0.02 1.52 16 Total: -1.00 -73.35 301.85 1.43 -71.92 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: 1.10 Total: 7.47 kcal Atomic # 6 Polarization: -44.01 SS G_CDS: 2.75 Total: -41.26 kcal Atomic # 7 Polarization: -78.90 SS G_CDS: -1.36 Total: -80.26 kcal Atomic # 8 Polarization: -77.75 SS G_CDS: -4.27 Total: -82.02 kcal Atomic # 9 Polarization: -8.22 SS G_CDS: 1.49 Total: -6.73 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.30 kcal Atomic # 16 Polarization: 86.89 SS G_CDS: -0.31 Total: 86.58 kcal Total: -73.35 1.43 -71.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619506100.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.012 kcal (2) G-P(sol) polarization free energy of solvation -73.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds