Wall clock time and date at job start Tue Mar 31 2020 05:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99994 * 2 1 4 4 H 1.48503 * 109.46625 * 239.99919 * 3 2 1 5 5 H 1.48497 * 109.47085 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46969 * 120.00022 * 3 2 1 7 7 C 1.37877 * 120.00098 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00541 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99738 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.47010 * 180.02562 * 9 7 2 11 11 C 1.34771 * 120.00123 * 180.02562 * 10 9 7 12 12 O 1.21288 * 119.99986 * 359.97438 * 11 10 9 13 13 C 1.50698 * 120.00319 * 179.97438 * 11 10 9 14 14 S 1.81394 * 109.47410 * 179.97438 * 13 11 10 15 15 C 1.81398 * 103.00193 * 179.97438 * 14 13 11 16 16 C 1.50706 * 109.47148 * 179.97438 * 15 14 13 17 17 C 1.38244 * 119.97491 * 269.72674 * 16 15 14 18 18 C 1.38201 * 120.02142 * 179.72306 * 17 16 15 19 19 C 1.38459 * 119.97601 * 0.57371 * 18 17 16 20 20 F 1.35094 * 120.02797 * 179.67746 * 19 18 17 21 21 C 1.38461 * 119.94519 * 359.70287 * 19 18 17 22 22 C 1.38193 * 119.98059 * 359.97438 * 21 19 18 23 23 H 0.96998 * 119.99936 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.46996 * 60.00052 * 9 7 2 25 25 H 1.09001 * 109.47216 * 300.00162 * 9 7 2 26 26 H 0.97006 * 119.99920 * 359.97438 * 10 9 7 27 27 H 1.08998 * 109.47180 * 59.99787 * 13 11 10 28 28 H 1.09001 * 109.47086 * 299.99864 * 13 11 10 29 29 H 1.09000 * 109.46753 * 60.00559 * 15 14 13 30 30 H 1.09000 * 109.47055 * 299.99894 * 15 14 13 31 31 H 1.08000 * 119.98716 * 359.97438 * 17 16 15 32 32 H 1.07996 * 120.01399 * 180.25476 * 18 17 16 33 33 H 1.08009 * 120.01051 * 179.97438 * 21 19 18 34 34 H 1.07999 * 119.99486 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 7 2.2030 -3.6127 0.0027 11 6 1.7538 -4.8834 0.0033 12 8 0.5613 -5.1050 0.0035 13 6 2.7330 -6.0288 0.0038 14 16 1.8260 -7.5998 0.0053 15 6 3.1526 -8.8369 0.0049 16 6 2.5510 -10.2187 0.0067 17 6 2.2818 -10.8532 1.2051 18 6 1.7248 -12.1180 1.2079 19 6 1.4473 -12.7544 0.0100 20 9 0.9088 -13.9934 0.0115 21 6 1.7227 -12.1201 -1.1896 22 6 2.2735 -10.8527 -1.1901 23 1 -0.4850 0.8400 0.0004 24 1 0.6240 -2.5575 -0.8880 25 1 0.6246 -2.5563 0.8920 26 1 3.1567 -3.4355 0.0022 27 1 3.3597 -5.9707 0.8936 28 1 3.3596 -5.9715 -0.8863 29 1 3.7694 -8.7085 0.8944 30 1 3.7681 -8.7094 -0.8857 31 1 2.5032 -10.3587 2.1393 32 1 1.5107 -12.6119 2.1442 33 1 1.5070 -12.6158 -2.1247 34 1 2.4888 -10.3579 -2.1256 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701309857.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:00 Heat of formation + Delta-G solvation = -67.774407 kcal Electronic energy + Delta-G solvation = -17975.396661 eV Core-core repulsion = 14720.531342 eV Total energy + Delta-G solvation = -3254.865319 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.078 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.17040 -39.41887 -38.76959 -34.26919 -32.81853 -32.41846 -31.46686 -30.05745 -27.16721 -26.68266 -23.38911 -22.68444 -21.89389 -19.89859 -17.99411 -17.37110 -16.71037 -16.38289 -15.90343 -15.82543 -15.63192 -15.20992 -15.12067 -14.46108 -14.19315 -14.10540 -13.80784 -13.62981 -13.08963 -12.89100 -12.57604 -12.30865 -12.02851 -11.83449 -11.62563 -11.32468 -11.02244 -10.90052 -10.35891 -10.02919 -9.46234 -9.43216 -9.25323 -8.79791 -8.78447 -7.99363 -7.60219 -6.20103 -4.27823 0.58404 0.91951 1.65907 2.52292 3.20865 3.22780 3.27627 3.29098 3.34956 3.95033 3.98808 4.30329 4.33484 4.33677 4.57868 4.73623 4.92976 5.12078 5.16228 5.17831 5.19946 5.22679 5.45205 5.58019 5.66045 5.79866 5.89034 6.14798 6.54675 7.23284 7.32510 7.46155 7.59437 7.91970 8.50847 8.70584 8.97832 9.38590 10.89983 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.062616 B = 0.002335 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.064650 B =11986.099941 C =12117.623070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.546 4.546 8 H 0.063 0.937 9 C 0.251 3.749 10 N -0.707 5.707 11 C 0.513 3.487 12 O -0.535 6.535 13 C -0.130 4.130 14 S -0.167 6.167 15 C -0.074 4.074 16 C -0.077 4.077 17 C -0.072 4.072 18 C -0.153 4.153 19 C 0.098 3.902 20 F -0.141 7.141 21 C -0.153 4.153 22 C -0.072 4.072 23 H 0.267 0.733 24 H 0.028 0.972 25 H 0.028 0.972 26 H 0.391 0.609 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.136 0.864 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.519 -22.575 0.015 24.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.584 4.584 8 H 0.081 0.919 9 C 0.130 3.870 10 N -0.356 5.356 11 C 0.296 3.704 12 O -0.413 6.413 13 C -0.282 4.282 14 S 0.062 5.938 15 C -0.221 4.221 16 C -0.078 4.078 17 C -0.092 4.092 18 C -0.172 4.172 19 C 0.078 3.922 20 F -0.120 7.120 21 C -0.172 4.172 22 C -0.092 4.092 23 H 0.077 0.923 24 H 0.046 0.954 25 H 0.046 0.954 26 H 0.224 0.776 27 H 0.123 0.877 28 H 0.123 0.877 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.154 0.846 32 H 0.155 0.845 33 H 0.155 0.845 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 7.366 -22.707 0.016 23.872 hybrid contribution 2.182 1.072 -0.001 2.431 sum 9.548 -21.635 0.014 23.648 Atomic orbital electron populations 1.69962 1.06118 1.27520 1.48545 1.24958 0.94933 0.99480 0.94631 0.86455 0.79406 0.82244 0.78687 1.20052 1.21026 1.20046 1.21167 0.93222 0.90380 1.53654 0.91910 1.19153 0.88219 0.81682 0.97935 1.46396 1.11289 1.05634 1.72306 1.19527 0.88748 0.83784 0.78372 1.90719 1.16221 1.84268 1.50100 1.23634 1.02112 0.95881 1.06561 1.87873 1.11105 0.96864 1.97982 1.22432 0.99909 0.93875 1.05896 1.19267 1.00777 0.94204 0.93601 1.20944 0.96516 0.93612 0.98158 1.21134 1.02406 0.96392 0.97264 1.17766 0.98622 0.81000 0.94794 1.91500 1.83624 1.39385 1.97452 1.21135 1.02469 0.96357 0.97240 1.20944 0.96519 0.93573 0.98187 0.92304 0.95355 0.95363 0.77595 0.87676 0.87671 0.89038 0.89032 0.84594 0.84535 0.84535 0.84590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.88 13.29 55.43 0.74 -25.14 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.91 20.57 29.54 -169.99 -5.02 15.55 16 4 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.55 -14.59 9.28 -34.44 -0.32 -14.90 16 8 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 9 C 0.25 6.56 5.43 -5.19 -0.03 6.54 16 10 N -0.71 -14.46 5.55 -61.47 -0.34 -14.80 16 11 C 0.51 10.05 7.85 -10.99 -0.09 9.96 16 12 O -0.54 -12.97 15.87 5.55 0.09 -12.89 16 13 C -0.13 -1.75 6.42 36.00 0.23 -1.52 16 14 S -0.17 -2.31 20.86 -107.50 -2.24 -4.56 16 15 C -0.07 -0.66 6.07 36.01 0.22 -0.44 16 16 C -0.08 -0.71 5.14 -104.61 -0.54 -1.25 16 17 C -0.07 -0.63 9.70 -39.59 -0.38 -1.01 16 18 C -0.15 -1.33 10.03 -39.51 -0.40 -1.73 16 19 C 0.10 0.94 7.30 -39.42 -0.29 0.65 16 20 F -0.14 -1.45 17.27 2.25 0.04 -1.41 16 21 C -0.15 -1.33 10.03 -39.52 -0.40 -1.73 16 22 C -0.07 -0.63 9.70 -39.59 -0.38 -1.01 16 23 H 0.27 7.34 8.31 -40.82 -0.34 7.01 16 24 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.39 6.66 8.32 -40.82 -0.34 6.32 16 27 H 0.10 1.14 8.14 -51.92 -0.42 0.72 16 28 H 0.10 1.14 8.14 -51.92 -0.42 0.72 16 29 H 0.09 0.68 8.08 -51.92 -0.42 0.26 16 30 H 0.09 0.68 8.09 -51.92 -0.42 0.26 16 31 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 32 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 33 H 0.14 0.94 8.06 -52.48 -0.42 0.51 16 34 H 0.14 0.97 8.06 -52.49 -0.42 0.54 16 LS Contribution 321.27 15.07 4.84 4.84 Total: -1.00 -32.85 321.27 -8.46 -41.31 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -4.10 Total: 1.87 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: -2.47 Total: -4.78 kcal Atomic # 7 Polarization: -40.34 SS G_CDS: 0.40 Total: -39.94 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: 0.09 Total: -12.89 kcal Atomic # 9 Polarization: -1.45 SS G_CDS: 0.04 Total: -1.41 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: -2.31 SS G_CDS: -2.24 Total: -4.56 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.85 -8.46 -41.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701309857.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.460 kcal (2) G-P(sol) polarization free energy of solvation -32.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds