Wall clock time and date at job start Tue Mar 31 2020 05:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99994 * 2 1 4 4 H 1.48503 * 109.46625 * 239.99919 * 3 2 1 5 5 H 1.48497 * 109.47085 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46969 * 120.00022 * 3 2 1 7 7 C 1.37877 * 120.00098 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00541 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99738 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.47010 * 180.02562 * 9 7 2 11 11 C 1.34771 * 120.00123 * 180.02562 * 10 9 7 12 12 O 1.21288 * 119.99986 * 359.97438 * 11 10 9 13 13 C 1.50698 * 120.00319 * 179.97438 * 11 10 9 14 14 S 1.81394 * 109.47410 * 179.97438 * 13 11 10 15 15 C 1.81398 * 103.00193 * 179.97438 * 14 13 11 16 16 C 1.50706 * 109.47148 * 179.97438 * 15 14 13 17 17 C 1.38244 * 119.97491 * 269.72674 * 16 15 14 18 18 C 1.38201 * 120.02142 * 179.72306 * 17 16 15 19 19 C 1.38459 * 119.97601 * 0.57371 * 18 17 16 20 20 F 1.35094 * 120.02797 * 179.67746 * 19 18 17 21 21 C 1.38461 * 119.94519 * 359.70287 * 19 18 17 22 22 C 1.38193 * 119.98059 * 359.97438 * 21 19 18 23 23 H 0.96998 * 119.99936 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.46996 * 60.00052 * 9 7 2 25 25 H 1.09001 * 109.47216 * 300.00162 * 9 7 2 26 26 H 0.97006 * 119.99920 * 359.97438 * 10 9 7 27 27 H 1.08998 * 109.47180 * 59.99787 * 13 11 10 28 28 H 1.09001 * 109.47086 * 299.99864 * 13 11 10 29 29 H 1.09000 * 109.46753 * 60.00559 * 15 14 13 30 30 H 1.09000 * 109.47055 * 299.99894 * 15 14 13 31 31 H 1.08000 * 119.98716 * 359.97438 * 17 16 15 32 32 H 1.07996 * 120.01399 * 180.25476 * 18 17 16 33 33 H 1.08009 * 120.01051 * 179.97438 * 21 19 18 34 34 H 1.07999 * 119.99486 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 7 2.2030 -3.6127 0.0027 11 6 1.7538 -4.8834 0.0033 12 8 0.5613 -5.1050 0.0035 13 6 2.7330 -6.0288 0.0038 14 16 1.8260 -7.5998 0.0053 15 6 3.1526 -8.8369 0.0049 16 6 2.5510 -10.2187 0.0067 17 6 2.2818 -10.8532 1.2051 18 6 1.7248 -12.1180 1.2079 19 6 1.4473 -12.7544 0.0100 20 9 0.9088 -13.9934 0.0115 21 6 1.7227 -12.1201 -1.1896 22 6 2.2735 -10.8527 -1.1901 23 1 -0.4850 0.8400 0.0004 24 1 0.6240 -2.5575 -0.8880 25 1 0.6246 -2.5563 0.8920 26 1 3.1567 -3.4355 0.0022 27 1 3.3597 -5.9707 0.8936 28 1 3.3596 -5.9715 -0.8863 29 1 3.7694 -8.7085 0.8944 30 1 3.7681 -8.7094 -0.8857 31 1 2.5032 -10.3587 2.1393 32 1 1.5107 -12.6119 2.1442 33 1 1.5070 -12.6158 -2.1247 34 1 2.4888 -10.3579 -2.1256 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701309857.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:59 Heat of formation + Delta-G solvation = -88.749134 kcal Electronic energy + Delta-G solvation = -17976.306193 eV Core-core repulsion = 14720.531342 eV Total energy + Delta-G solvation = -3255.774852 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.078 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.91912 -40.46034 -40.05144 -36.18182 -34.40032 -33.48813 -32.10708 -31.46321 -28.78815 -27.66403 -24.66338 -24.03521 -22.63594 -21.56745 -19.10725 -18.65422 -17.71261 -17.48667 -17.41083 -16.86468 -16.63449 -16.62670 -16.36409 -15.90203 -15.07411 -14.90922 -14.79520 -14.48032 -14.39994 -14.39778 -14.00050 -13.61736 -13.15614 -13.06353 -12.92663 -12.66997 -12.59334 -12.23620 -11.95480 -11.51897 -10.95943 -10.92978 -10.80074 -10.07549 -9.89085 -9.51540 -8.64763 -8.29251 -6.46382 -0.18482 0.27786 0.75151 1.43858 1.47829 1.56138 1.63875 1.67077 2.32014 2.55822 2.69953 3.05689 3.27528 3.63284 3.72611 3.89943 3.97091 4.12601 4.14946 4.31131 4.32927 4.55653 4.61449 4.97658 5.00151 5.09643 5.15065 5.22298 5.23592 5.45434 5.48976 5.65366 5.83190 5.89395 6.63939 6.82426 7.22392 7.43138 8.82731 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.062616 B = 0.002335 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.064650 B =11986.099941 C =12117.623070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.986 3.014 4 H -0.261 1.261 5 H -0.287 1.287 6 H -0.261 1.261 7 C -0.557 4.557 8 H 0.087 0.913 9 C 0.267 3.733 10 N -0.701 5.701 11 C 0.507 3.493 12 O -0.588 6.588 13 C -0.106 4.106 14 S -0.245 6.245 15 C -0.048 4.048 16 C -0.090 4.090 17 C -0.076 4.076 18 C -0.159 4.159 19 C 0.080 3.920 20 F -0.149 7.149 21 C -0.159 4.159 22 C -0.076 4.076 23 H 0.269 0.731 24 H -0.013 1.013 25 H -0.013 1.013 26 H 0.412 0.588 27 H 0.140 0.860 28 H 0.140 0.860 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.151 0.849 32 H 0.151 0.849 33 H 0.151 0.849 34 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.713 -22.654 0.017 25.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.809 3.191 4 H -0.186 1.186 5 H -0.213 1.213 6 H -0.186 1.186 7 C -0.594 4.594 8 H 0.105 0.895 9 C 0.144 3.856 10 N -0.352 5.352 11 C 0.293 3.707 12 O -0.470 6.470 13 C -0.257 4.257 14 S -0.016 6.016 15 C -0.195 4.195 16 C -0.091 4.091 17 C -0.096 4.096 18 C -0.178 4.178 19 C 0.060 3.940 20 F -0.128 7.128 21 C -0.178 4.178 22 C -0.096 4.096 23 H 0.078 0.922 24 H 0.005 0.995 25 H 0.005 0.995 26 H 0.248 0.752 27 H 0.158 0.842 28 H 0.158 0.842 29 H 0.132 0.868 30 H 0.132 0.868 31 H 0.169 0.831 32 H 0.168 0.832 33 H 0.168 0.832 34 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 10.620 -22.811 0.018 25.162 hybrid contribution 1.149 0.954 -0.002 1.494 sum 11.769 -21.856 0.016 24.823 Atomic orbital electron populations 1.70136 1.08341 1.28668 1.49861 1.26094 0.95773 1.04011 0.93855 0.85190 0.77875 0.76492 0.79559 1.18560 1.21286 1.18551 1.21590 0.94402 0.90416 1.53023 0.89518 1.18560 0.88677 0.84225 0.94144 1.46083 1.11416 1.05025 1.72655 1.20577 0.89230 0.84664 0.76219 1.90699 1.19182 1.85146 1.51932 1.23441 1.00137 0.92241 1.09868 1.88211 1.15703 0.99424 1.98294 1.22434 0.97761 0.91190 1.08087 1.19444 1.01286 0.94456 0.93938 1.21187 0.96031 0.93561 0.98811 1.21357 1.02153 0.96606 0.97665 1.18045 0.99293 0.80988 0.95640 1.91476 1.83869 1.39929 1.97527 1.21357 1.02215 0.96570 0.97639 1.21187 0.96040 0.93528 0.98843 0.92247 0.99463 0.99470 0.75208 0.84189 0.84183 0.86837 0.86834 0.83090 0.83155 0.83156 0.83101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.05 13.29 21.45 0.28 -55.76 16 2 C 0.00 0.13 5.46 84.65 0.46 0.59 16 3 Si 0.99 41.61 29.54 68.60 2.03 43.64 16 4 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 5 H -0.29 -12.14 7.11 99.48 0.71 -11.43 16 6 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 7 C -0.56 -29.70 9.28 25.60 0.24 -29.46 16 8 H 0.09 4.10 7.60 -2.91 -0.02 4.08 16 9 C 0.27 14.49 5.43 85.64 0.46 14.95 16 10 N -0.70 -28.45 5.55 -466.77 -2.59 -31.04 16 11 C 0.51 19.71 7.85 87.66 0.69 20.40 16 12 O -0.59 -29.54 15.87 -3.05 -0.05 -29.59 16 13 C -0.11 -2.55 6.42 71.24 0.46 -2.10 16 14 S -0.24 -6.42 20.86 -56.49 -1.18 -7.60 16 15 C -0.05 -0.69 6.07 71.24 0.43 -0.26 16 16 C -0.09 -1.44 5.14 -19.86 -0.10 -1.55 16 17 C -0.08 -1.18 9.70 22.26 0.22 -0.96 16 18 C -0.16 -2.58 10.03 22.31 0.22 -2.36 16 19 C 0.08 1.48 7.30 22.38 0.16 1.64 16 20 F -0.15 -3.03 17.27 44.97 0.78 -2.25 16 21 C -0.16 -2.59 10.03 22.31 0.22 -2.36 16 22 C -0.08 -1.18 9.70 22.26 0.22 -0.97 16 23 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 24 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 25 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 26 H 0.41 13.15 8.32 -92.70 -0.77 12.38 16 27 H 0.14 2.44 8.14 -2.39 -0.02 2.42 16 28 H 0.14 2.44 8.14 -2.39 -0.02 2.42 16 29 H 0.11 1.19 8.08 -2.39 -0.02 1.17 16 30 H 0.11 1.19 8.09 -2.39 -0.02 1.17 16 31 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 32 H 0.15 1.89 8.06 -2.91 -0.02 1.87 16 33 H 0.15 1.89 8.06 -2.91 -0.02 1.87 16 34 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 Total: -1.00 -75.41 321.27 3.30 -72.11 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: 0.35 Total: 12.92 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: 3.68 Total: -2.43 kcal Atomic # 7 Polarization: -84.49 SS G_CDS: -2.30 Total: -86.80 kcal Atomic # 8 Polarization: -29.54 SS G_CDS: -0.05 Total: -29.59 kcal Atomic # 9 Polarization: -3.03 SS G_CDS: 0.78 Total: -2.25 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.64 kcal Atomic # 16 Polarization: -6.42 SS G_CDS: -1.18 Total: -7.60 kcal Total: -75.41 3.30 -72.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701309857.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.642 kcal (2) G-P(sol) polarization free energy of solvation -75.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds