Wall clock time and date at job start Tue Mar 31 2020 05:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35675 * 116.99772 * 2 1 4 4 C 1.38926 * 119.68384 * 180.02562 * 3 2 1 5 5 C 1.38375 * 119.11227 * 179.97438 * 4 3 2 6 6 C 1.38834 * 118.48488 * 359.73411 * 5 4 3 7 7 C 1.38046 * 119.28649 * 0.52812 * 6 5 4 8 8 C 1.50703 * 119.58141 * 179.73216 * 7 6 5 9 9 O 1.45206 * 109.47147 * 359.73026 * 8 7 6 10 10 C 1.34228 * 117.00001 * 180.02562 * 9 8 7 11 11 O 1.20826 * 120.00094 * 359.97438 * 10 9 8 12 12 C 1.50702 * 119.99603 * 180.02562 * 10 9 8 13 13 S 1.81007 * 109.46553 * 179.97438 * 12 10 9 14 14 C 1.76204 * 99.99713 * 179.97438 * 13 12 10 15 15 H 1.07997 * 119.99857 * 0.02562 * 14 13 12 16 16 C 1.38797 * 119.99647 * 180.02562 * 14 13 12 17 17 N 1.31633 * 119.99635 * 179.97438 * 16 14 13 18 18 Si 1.86790 * 120.00391 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.47264 * 89.99947 * 18 16 14 20 20 H 1.48507 * 109.47432 * 210.00322 * 18 16 14 21 21 H 1.48506 * 109.47240 * 330.00243 * 18 16 14 22 22 N 1.31959 * 120.83486 * 359.46096 * 7 6 5 23 23 H 1.09003 * 109.47150 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47868 * 300.00492 * 1 2 3 25 25 H 1.09005 * 109.46817 * 60.00434 * 1 2 3 26 26 H 1.07995 * 120.44270 * 359.95692 * 4 3 2 27 27 H 1.08007 * 120.75918 * 180.02562 * 5 4 3 28 28 H 1.08006 * 120.35666 * 180.26551 * 6 5 4 29 29 H 1.09001 * 109.46980 * 239.73055 * 8 7 6 30 30 H 1.09004 * 109.47113 * 119.73036 * 8 7 6 31 31 H 1.08998 * 109.46942 * 299.99225 * 12 10 9 32 32 H 1.08994 * 109.47301 * 60.00009 * 12 10 9 33 33 H 0.97003 * 119.99904 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2089 0.0000 4 6 3.4326 1.2740 -0.0005 5 6 4.0484 2.5132 -0.0011 6 6 3.2503 3.6492 -0.0067 7 6 1.8770 3.5097 -0.0005 8 6 1.0043 4.7384 -0.0004 9 8 1.8402 5.9257 -0.0010 10 6 1.2131 7.1125 -0.0005 11 8 0.0057 7.1577 -0.0001 12 6 2.0151 8.3884 -0.0017 13 16 0.8911 9.8072 -0.0014 14 6 2.0614 11.1245 -0.0021 15 1 3.1193 10.9070 -0.0029 16 6 1.6237 12.4416 -0.0015 17 7 2.4979 13.4257 -0.0016 18 14 -0.2060 12.8178 -0.0008 19 1 -0.6904 12.9171 1.3995 20 1 -0.4470 14.1054 -0.7005 21 1 -0.9353 11.7300 -0.7009 22 7 1.3185 2.3140 0.0001 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3635 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 4.0228 0.3696 -0.0003 27 1 5.1254 2.5948 -0.0019 28 1 3.6992 4.6316 -0.0116 29 1 0.3754 4.7373 0.8898 30 1 0.3746 4.7369 -0.8902 31 1 2.6443 8.4228 0.8876 32 1 2.6424 8.4224 -0.8923 33 1 2.1920 14.3462 -0.0016 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733007558.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:27 Heat of formation + Delta-G solvation = -105.862460 kcal Electronic energy + Delta-G solvation = -18586.619274 eV Core-core repulsion = 15317.729544 eV Total energy + Delta-G solvation = -3268.889731 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.91891 -41.37443 -39.06956 -37.64877 -34.67767 -33.89506 -32.59870 -31.33333 -28.93286 -27.88933 -27.43609 -24.17418 -23.44644 -22.37240 -19.96979 -19.38503 -18.64706 -17.90715 -17.86619 -17.23682 -17.04033 -17.03019 -16.85120 -15.96687 -15.55300 -15.28091 -15.12309 -14.89007 -14.35043 -14.29326 -13.65242 -13.51953 -13.30046 -13.07621 -13.02071 -12.78486 -12.64592 -12.34914 -11.90727 -11.87123 -11.69999 -11.17304 -10.89909 -10.76351 -10.60773 -9.50953 -9.05158 -8.51500 -6.24703 0.00272 0.25880 0.71536 1.04865 1.30264 1.32827 1.49586 1.72930 2.12414 2.24337 2.62529 2.63315 2.86888 3.00498 3.64271 3.81879 3.98831 4.07927 4.09447 4.17248 4.19798 4.39403 4.39931 4.43650 4.45965 4.60901 4.75190 4.97962 5.09150 5.29147 5.43779 5.71009 6.13234 6.15691 6.56727 6.70610 6.92829 8.60633 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.044993 B = 0.002879 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.170595 B = 9721.996021 C =10318.416345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.316 6.316 3 C 0.304 3.696 4 C -0.188 4.188 5 C -0.031 4.031 6 C -0.192 4.192 7 C 0.145 3.855 8 C 0.122 3.878 9 O -0.340 6.340 10 C 0.495 3.505 11 O -0.515 6.515 12 C -0.088 4.088 13 S -0.165 6.165 14 C -0.529 4.529 15 H 0.068 0.932 16 C 0.047 3.953 17 N -0.915 5.915 18 Si 0.913 3.087 19 H -0.262 1.262 20 H -0.260 1.260 21 H -0.234 1.234 22 N -0.555 5.555 23 H 0.124 0.876 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.167 0.833 27 H 0.181 0.819 28 H 0.156 0.844 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.316 -26.306 -0.104 26.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.224 6.224 3 C 0.125 3.875 4 C -0.208 4.208 5 C -0.056 4.056 6 C -0.212 4.212 7 C 0.010 3.990 8 C 0.047 3.953 9 O -0.257 6.257 10 C 0.337 3.663 11 O -0.403 6.403 12 C -0.236 4.236 13 S 0.061 5.939 14 C -0.677 4.677 15 H 0.086 0.914 16 C -0.159 4.159 17 N -0.552 5.552 18 Si 0.735 3.265 19 H -0.187 1.187 20 H -0.185 1.185 21 H -0.158 1.158 22 N -0.281 5.281 23 H 0.143 0.857 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.185 0.815 27 H 0.198 0.802 28 H 0.173 0.827 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.148 0.852 32 H 0.148 0.852 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.953 -26.446 -0.107 26.463 hybrid contribution 1.216 0.793 0.043 1.453 sum 0.263 -25.653 -0.064 25.654 Atomic orbital electron populations 1.23033 0.76077 1.04682 1.02047 1.86236 1.24137 1.24016 1.87961 1.20045 0.90315 0.84126 0.93043 1.21485 0.91288 1.01135 1.06889 1.21892 1.02448 0.89912 0.91310 1.22055 0.93328 1.01930 1.03888 1.20179 0.92609 0.90118 0.96063 1.21361 0.90638 0.78753 1.04550 1.86369 1.40960 1.14046 1.84289 1.22883 0.86950 0.84755 0.71732 1.90688 1.16440 1.87582 1.45567 1.22936 1.01473 0.89768 1.09379 1.84708 1.13187 0.98258 1.97704 1.22405 0.94237 0.92437 1.58587 0.91421 1.25545 1.02527 0.94999 0.92856 1.70012 1.36214 1.00196 1.48809 0.85894 0.80202 0.80194 0.80258 1.18654 1.18465 1.15774 1.66599 1.42227 0.98468 1.20814 0.85745 0.92803 0.92817 0.81522 0.80160 0.82655 0.88818 0.88817 0.85192 0.85155 0.91296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.38 113.37 1.18 1.71 16 2 O -0.32 -6.13 10.48 -89.93 -0.94 -7.07 16 3 C 0.30 6.39 7.49 84.80 0.63 7.03 16 4 C -0.19 -2.95 10.04 22.47 0.23 -2.72 16 5 C -0.03 -0.43 10.17 22.45 0.23 -0.20 16 6 C -0.19 -3.62 9.41 22.37 0.21 -3.41 16 7 C 0.15 3.34 6.78 42.49 0.29 3.62 16 8 C 0.12 2.98 6.01 71.24 0.43 3.41 16 9 O -0.34 -9.06 8.65 -51.40 -0.44 -9.50 16 10 C 0.49 16.36 7.98 71.24 0.57 16.93 16 11 O -0.52 -20.15 15.61 21.96 0.34 -19.80 16 12 C -0.09 -3.11 6.27 71.24 0.45 -2.66 16 13 S -0.17 -7.87 18.55 -56.49 -1.05 -8.92 16 14 C -0.53 -29.56 10.04 67.95 0.68 -28.88 16 15 H 0.07 3.98 8.03 -2.91 -0.02 3.96 16 16 C 0.05 2.65 5.50 84.86 0.47 3.11 16 17 N -0.91 -54.34 13.97 21.65 0.30 -54.04 16 18 Si 0.91 43.35 27.74 68.60 1.90 45.26 16 19 H -0.26 -12.15 7.11 99.48 0.71 -11.45 16 20 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 21 H -0.23 -10.97 6.74 99.48 0.67 -10.30 16 22 N -0.55 -13.16 9.13 -296.99 -2.71 -15.87 16 23 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.05 0.85 8.10 -2.39 -0.02 0.83 16 25 H 0.05 0.84 8.10 -2.38 -0.02 0.83 16 26 H 0.17 1.72 8.06 -2.91 -0.02 1.70 16 27 H 0.18 1.18 8.06 -2.91 -0.02 1.16 16 28 H 0.16 2.73 6.97 -2.91 -0.02 2.71 16 29 H 0.09 2.31 8.13 -2.39 -0.02 2.29 16 30 H 0.09 2.31 8.13 -2.38 -0.02 2.29 16 31 H 0.13 4.19 8.14 -2.40 -0.02 4.17 16 32 H 0.13 4.21 8.14 -2.40 -0.02 4.19 16 33 H 0.28 15.26 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -68.95 311.47 3.85 -65.10 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: 1.09 Total: 6.90 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: 5.36 Total: -2.05 kcal Atomic # 7 Polarization: -67.51 SS G_CDS: -2.41 Total: -69.92 kcal Atomic # 8 Polarization: -35.34 SS G_CDS: -1.04 Total: -36.38 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 1.90 Total: 45.26 kcal Atomic # 16 Polarization: -7.87 SS G_CDS: -1.05 Total: -8.92 kcal Total: -68.95 3.85 -65.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733007558.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.758 kcal (2) G-P(sol) polarization free energy of solvation -68.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds