Wall clock time and date at job start Tue Mar 31 2020 06:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31682 * 119.71385 * 2 1 4 4 C 1.32051 * 121.86667 * 180.02562 * 3 2 1 5 5 Cl 1.73603 * 119.46898 * 180.02562 * 4 3 2 6 6 C 1.38567 * 121.05448 * 0.02562 * 4 3 2 7 7 C 1.38229 * 119.30491 * 359.97438 * 6 4 3 8 8 C 1.39572 * 119.71355 * 180.02562 * 2 1 3 9 9 C 1.47659 * 120.54725 * 359.71061 * 8 2 1 10 10 O 1.21477 * 120.00179 * 354.02614 * 9 8 2 11 11 O 1.34719 * 120.00105 * 174.03008 * 9 8 2 12 12 C 1.45195 * 117.00461 * 179.97438 * 11 9 8 13 13 C 1.52995 * 109.47349 * 179.97438 * 12 11 9 14 14 C 1.52999 * 109.47024 * 180.02562 * 13 12 11 15 15 C 1.50700 * 109.47451 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99593 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00328 * 179.97438 * 15 14 13 18 18 N 1.31506 * 119.99942 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99690 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46834 * 90.00638 * 19 17 15 21 21 H 1.48501 * 109.46656 * 210.00215 * 19 17 15 22 22 H 1.48496 * 109.47321 * 329.99967 * 19 17 15 23 23 H 1.08996 * 109.47374 * 263.47404 * 1 2 3 24 24 H 1.09002 * 109.47279 * 23.47083 * 1 2 3 25 25 H 1.09000 * 109.47121 * 143.46710 * 1 2 3 26 26 H 1.08005 * 120.34413 * 179.97438 * 6 4 3 27 27 H 1.07992 * 120.85430 * 180.02562 * 7 6 4 28 28 H 1.08999 * 109.47397 * 300.01010 * 12 11 9 29 29 H 1.09007 * 109.47082 * 60.00010 * 12 11 9 30 30 H 1.08991 * 109.47396 * 300.00470 * 13 12 11 31 31 H 1.09001 * 109.46925 * 60.00511 * 13 12 11 32 32 H 1.09004 * 109.47632 * 300.00312 * 14 13 12 33 33 H 1.09007 * 109.47391 * 60.00216 * 14 13 12 34 34 H 0.96999 * 119.99976 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1597 1.1437 0.0000 4 6 3.4792 1.1933 -0.0005 5 17 4.2759 2.7357 0.0002 6 6 4.2381 0.0339 -0.0016 7 6 3.6001 -1.1924 -0.0016 8 6 2.1988 -1.2122 -0.0005 9 6 1.4663 -2.4943 0.0053 10 8 0.2570 -2.5025 0.1201 11 8 2.1392 -3.6551 -0.1166 12 6 1.3545 -4.8766 -0.1022 13 6 2.2846 -6.0821 -0.2516 14 6 1.4576 -7.3692 -0.2370 15 6 2.3738 -8.5568 -0.3835 16 1 3.4394 -8.4083 -0.4772 17 6 1.8517 -9.8328 -0.3969 18 7 0.5542 -10.0136 -0.2823 19 14 2.9875 -11.3047 -0.5792 20 1 3.4220 -11.7641 0.7645 21 1 2.2659 -12.4042 -1.2688 22 1 4.1773 -10.9159 -1.3782 23 1 -0.3634 -0.1168 1.0210 24 1 -0.3634 0.9426 -0.4093 25 1 -0.3633 -0.8257 -0.6117 26 1 5.3168 0.0878 -0.0024 27 1 4.1669 -2.1116 -0.0020 28 1 0.8130 -4.9496 0.8410 29 1 0.6439 -4.8618 -0.9287 30 1 2.8256 -6.0089 -1.1949 31 1 2.9954 -6.0972 0.5747 32 1 0.9162 -7.4427 0.7062 33 1 0.7470 -7.3540 -1.0635 34 1 0.1869 -10.9113 -0.2921 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751784168.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:11 Heat of formation + Delta-G solvation = -73.268085 kcal Electronic energy + Delta-G solvation = -18741.076646 eV Core-core repulsion = 15471.556607 eV Total energy + Delta-G solvation = -3269.520039 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.20075 -39.77071 -37.19308 -36.62738 -34.13857 -33.50229 -32.71668 -31.70268 -28.45489 -27.10460 -25.08310 -23.44575 -22.67474 -21.30491 -20.41320 -18.05647 -17.58557 -16.93143 -16.61934 -16.48425 -16.08087 -15.21426 -14.57437 -14.50261 -14.09097 -13.78897 -13.48349 -13.17780 -13.03099 -12.46282 -12.23507 -12.14577 -11.92019 -11.87972 -11.76615 -11.01612 -10.72147 -10.68444 -10.51108 -10.45926 -10.37130 -10.08071 -9.80450 -9.55805 -9.35859 -9.21443 -8.42977 -6.07689 -4.10991 -0.00737 0.65901 1.27124 2.28657 2.62278 3.21831 3.28132 3.34616 3.37711 3.83986 4.22473 4.31388 4.37243 4.41107 4.76131 5.01881 5.28463 5.32220 5.39680 5.47340 5.48981 5.52317 5.64138 5.76951 5.91433 6.04691 6.38392 6.45912 6.72768 6.90473 7.18606 7.54838 7.65341 7.71021 7.90222 8.30833 8.95193 9.53632 11.03732 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.036238 B = 0.002659 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.487710 B =10528.280224 C =11265.895856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.214 3.786 3 N -0.487 5.487 4 C 0.206 3.794 5 Cl -0.023 7.023 6 C -0.176 4.176 7 C 0.000 4.000 8 C -0.175 4.175 9 C 0.509 3.491 10 O -0.495 6.495 11 O -0.352 6.352 12 C 0.069 3.931 13 C -0.109 4.109 14 C 0.024 3.976 15 C -0.523 4.523 16 H 0.057 0.943 17 C 0.057 3.943 18 N -0.894 5.894 19 Si 0.895 3.105 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.273 1.273 23 H 0.091 0.909 24 H 0.076 0.924 25 H 0.107 0.893 26 H 0.155 0.845 27 H 0.165 0.835 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.020 0.980 33 H 0.020 0.980 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.986 22.984 0.646 23.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.076 3.924 3 N -0.199 5.199 4 C 0.042 3.958 5 Cl 0.006 6.994 6 C -0.197 4.197 7 C -0.025 4.025 8 C -0.179 4.179 9 C 0.353 3.647 10 O -0.385 6.385 11 O -0.269 6.269 12 C -0.003 4.003 13 C -0.147 4.147 14 C -0.013 4.013 15 C -0.561 4.561 16 H 0.076 0.924 17 C -0.144 4.144 18 N -0.533 5.533 19 Si 0.723 3.277 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.198 1.198 23 H 0.109 0.891 24 H 0.095 0.905 25 H 0.125 0.875 26 H 0.173 0.827 27 H 0.182 0.818 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.038 0.962 33 H 0.038 0.962 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.091 23.705 0.678 24.255 hybrid contribution 1.056 -1.466 -0.042 1.807 sum 6.147 22.239 0.636 23.082 Atomic orbital electron populations 1.21169 0.86501 1.04573 1.04852 1.21438 0.97654 0.85132 0.88184 1.67030 1.08135 1.29264 1.15427 1.22001 0.90028 0.88011 0.95756 1.98429 1.76774 1.28177 1.96038 1.21846 1.02264 0.90657 1.04913 1.22026 0.92995 0.99020 0.88491 1.20155 0.94547 0.92500 1.10690 1.20624 0.85831 0.84533 0.73738 1.90806 1.14697 1.87799 1.45216 1.86525 1.42595 1.15197 1.82549 1.23596 0.94724 0.79540 1.02458 1.21781 0.98499 0.92487 1.01913 1.19053 0.95192 0.89316 0.97739 1.21157 0.93588 0.90838 1.50498 0.92430 1.25028 0.95084 0.99163 0.95170 1.69957 1.11058 1.22109 1.50180 0.86546 0.80721 0.82213 0.78249 1.20594 1.21168 1.19803 0.89106 0.90509 0.87519 0.82695 0.81785 0.91188 0.91193 0.92069 0.92079 0.96197 0.96180 0.92842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 8.87 36.00 0.32 -0.88 16 2 C 0.21 2.50 6.82 -82.16 -0.56 1.94 16 3 N -0.49 -5.68 10.24 -6.26 -0.06 -5.75 16 4 C 0.21 2.07 7.27 -17.34 -0.13 1.95 16 5 Cl -0.02 -0.20 29.10 -51.86 -1.51 -1.71 16 6 C -0.18 -1.46 9.86 -39.46 -0.39 -1.85 16 7 C 0.00 0.00 9.74 -38.87 -0.38 -0.38 16 8 C -0.18 -2.07 5.89 -104.84 -0.62 -2.69 16 9 C 0.51 7.24 7.83 34.58 0.27 7.51 16 10 O -0.50 -7.83 13.16 -19.25 -0.25 -8.09 16 11 O -0.35 -5.36 9.57 -40.54 -0.39 -5.74 16 12 C 0.07 1.19 5.47 37.15 0.20 1.39 16 13 C -0.11 -2.14 5.53 -26.73 -0.15 -2.29 16 14 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 15 C -0.52 -14.37 9.11 -34.44 -0.31 -14.68 16 16 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 18 N -0.89 -26.38 13.29 55.43 0.74 -25.65 16 19 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 23 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.11 1.24 5.86 -51.93 -0.30 0.93 16 26 H 0.16 0.84 8.06 -52.48 -0.42 0.42 16 27 H 0.16 1.29 7.72 -52.49 -0.40 0.89 16 28 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.07 1.20 8.14 -51.92 -0.42 0.78 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.02 0.52 8.14 -51.92 -0.42 0.10 16 34 H 0.26 7.28 8.31 -40.82 -0.34 6.95 16 LS Contribution 315.85 15.07 4.76 4.76 Total: -1.00 -30.29 315.85 -7.77 -38.06 By element: Atomic # 1 Polarization: 0.02 SS G_CDS: -4.05 Total: -4.03 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: -1.98 Total: -8.01 kcal Atomic # 7 Polarization: -32.07 SS G_CDS: 0.67 Total: -31.39 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: -0.64 Total: -13.83 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -1.51 Total: -1.71 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.29 -7.77 -38.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751784168.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.212 kcal (2) G-P(sol) polarization free energy of solvation -30.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds