Wall clock time and date at job start Tue Mar 31 2020 06:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.46894 * 2 1 4 4 H 1.09000 * 109.47140 * 304.99571 * 3 2 1 5 5 C 1.50706 * 109.47103 * 184.99525 * 3 2 1 6 6 H 1.07995 * 120.00167 * 239.72222 * 5 3 2 7 7 C 1.37879 * 119.99394 * 59.99920 * 5 3 2 8 8 N 1.31514 * 120.00338 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99424 * 180.02562 * 7 5 3 10 10 H 1.48490 * 109.47405 * 60.00219 * 9 7 5 11 11 H 1.48503 * 109.46845 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47399 * 299.99813 * 9 7 5 13 13 N 1.46500 * 109.47204 * 64.99698 * 3 2 1 14 14 C 1.34775 * 120.00366 * 274.99782 * 13 3 2 15 15 O 1.21599 * 119.99291 * 0.02562 * 14 13 3 16 16 C 1.47459 * 120.00245 * 179.97438 * 14 13 3 17 17 C 1.40203 * 120.20057 * 89.72404 * 16 14 13 18 18 O 1.35657 * 120.14123 * 0.02562 * 17 16 14 19 19 C 1.38631 * 119.71091 * 179.78782 * 17 16 14 20 20 C 1.38139 * 120.12073 * 0.47014 * 19 17 16 21 21 C 1.38429 * 120.41330 * 359.78485 * 20 19 17 22 22 C 1.38006 * 120.28805 * 359.97437 * 21 20 19 23 23 Cl 1.73602 * 120.06668 * 179.97438 * 22 21 20 24 24 H 1.09004 * 109.47017 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47867 * 299.99927 * 1 2 3 26 26 H 1.08993 * 109.47122 * 60.00537 * 1 2 3 27 27 H 1.08994 * 109.47407 * 239.99489 * 2 1 3 28 28 H 1.09001 * 109.46995 * 119.99751 * 2 1 3 29 29 H 0.96996 * 119.99730 * 179.97438 * 8 7 5 30 30 H 0.97001 * 119.99882 * 94.99976 * 13 3 2 31 31 H 0.96695 * 114.00169 * 89.99340 * 18 17 16 32 32 H 1.08001 * 119.93474 * 180.23081 * 19 17 16 33 33 H 1.08004 * 119.78808 * 179.76195 * 20 19 17 34 34 H 1.08001 * 119.85445 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1237 6 1 4.1469 1.8929 0.6502 7 6 4.1432 0.8784 -1.2279 8 7 3.4062 0.3374 -2.1732 9 14 6.0049 0.8800 -1.3809 10 1 6.5966 0.1453 -0.2341 11 1 6.3978 0.2167 -2.6501 12 1 6.5005 2.2799 -1.3806 13 7 1.6522 2.0975 1.2518 14 6 0.4350 2.6644 1.3669 15 8 -0.3417 2.6318 0.4318 16 6 0.0446 3.3232 2.6271 17 6 0.3127 4.6853 2.8233 18 8 0.9323 5.4041 1.8540 19 6 -0.0627 5.2954 4.0102 20 6 -0.6894 4.5618 4.9988 21 6 -0.9518 3.2155 4.8126 22 6 -0.5899 2.5921 3.6357 23 17 -0.9211 0.9032 3.4086 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3635 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8293 -0.0604 -2.9501 30 1 2.2717 2.1232 1.9978 31 1 0.3272 5.8173 1.2231 32 1 0.1387 6.3454 4.1637 33 1 -0.9761 5.0417 5.9229 34 1 -1.4418 2.6504 5.5917 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000762722919.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:15 Heat of formation + Delta-G solvation = -89.065334 kcal Electronic energy + Delta-G solvation = -20310.152236 eV Core-core repulsion = 17039.947177 eV Total energy + Delta-G solvation = -3270.205059 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.46891 -39.83594 -38.18021 -37.14350 -36.92685 -34.33511 -33.10296 -31.81097 -30.87186 -28.92213 -25.54528 -24.47835 -23.68996 -22.16741 -21.20793 -19.77789 -19.10511 -17.83448 -17.50769 -17.27576 -16.81458 -16.42620 -15.84694 -15.56417 -15.44917 -14.79873 -14.63410 -14.24295 -13.84079 -13.69105 -13.47407 -13.18971 -12.94990 -12.86724 -12.67005 -12.39309 -12.25520 -12.17994 -12.04534 -11.84498 -11.48434 -11.09829 -10.82061 -10.53450 -9.96808 -9.73432 -9.69136 -8.17199 -6.34788 -0.12270 0.02476 0.98986 1.43262 1.45462 1.53263 1.67082 2.28898 2.39724 2.60552 3.11633 3.12845 3.74470 3.94336 4.05153 4.25799 4.44206 4.47102 4.57164 4.61582 4.75670 5.03405 5.05808 5.17321 5.23744 5.24779 5.42344 5.52787 5.57988 5.60315 5.76211 5.87538 6.13975 6.63164 6.71073 6.87442 7.28899 7.45771 8.88068 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.020853 B = 0.005662 C = 0.004962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.386457 B = 4944.483903 C = 5642.020907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.117 4.117 3 C 0.282 3.718 4 H 0.000 1.000 5 C -0.550 4.550 6 H 0.067 0.933 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 0.970 3.030 10 H -0.265 1.265 11 H -0.283 1.283 12 H -0.272 1.272 13 N -0.690 5.690 14 C 0.560 3.440 15 O -0.579 6.579 16 C -0.171 4.171 17 C 0.138 3.862 18 O -0.504 6.504 19 C -0.134 4.134 20 C -0.061 4.061 21 C -0.117 4.117 22 C -0.010 4.010 23 Cl -0.066 7.066 24 H 0.041 0.959 25 H 0.061 0.939 26 H 0.024 0.976 27 H 0.073 0.927 28 H 0.037 0.963 29 H 0.266 0.734 30 H 0.398 0.602 31 H 0.410 0.590 32 H 0.170 0.830 33 H 0.187 0.813 34 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.748 8.563 17.122 20.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.156 4.156 3 C 0.179 3.821 4 H 0.018 0.982 5 C -0.588 4.588 6 H 0.085 0.915 7 C -0.182 4.182 8 N -0.552 5.552 9 Si 0.795 3.205 10 H -0.190 1.190 11 H -0.209 1.209 12 H -0.197 1.197 13 N -0.336 5.336 14 C 0.346 3.654 15 O -0.460 6.460 16 C -0.176 4.176 17 C 0.092 3.908 18 O -0.317 6.317 19 C -0.152 4.152 20 C -0.079 4.079 21 C -0.136 4.136 22 C -0.038 4.038 23 Cl -0.037 7.037 24 H 0.060 0.940 25 H 0.080 0.920 26 H 0.043 0.957 27 H 0.091 0.909 28 H 0.056 0.944 29 H 0.075 0.925 30 H 0.231 0.769 31 H 0.270 0.730 32 H 0.188 0.812 33 H 0.205 0.795 34 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -7.777 8.099 16.502 19.960 hybrid contribution 0.739 -0.345 -0.909 1.221 sum -7.039 7.754 15.593 18.783 Atomic orbital electron populations 1.21848 0.97096 0.99183 1.01241 1.21741 0.93759 0.98979 1.01111 1.18398 0.93726 0.89124 0.80873 0.98239 1.21504 0.91326 1.39100 1.06911 0.91501 1.25749 1.03376 0.94236 0.94857 1.70038 1.37145 1.38196 1.09776 0.85429 0.79009 0.78461 0.77630 1.19019 1.20860 1.19698 1.46263 1.14873 1.54966 1.17522 1.18247 0.82046 0.77984 0.87158 1.90754 1.52450 1.61408 1.41388 1.20392 1.05657 0.96256 0.95249 1.18605 0.93646 0.87502 0.91065 1.84726 1.36774 1.68061 1.42139 1.21825 0.98569 1.02650 0.92185 1.21623 0.94369 0.92034 0.99831 1.21418 1.00822 0.96239 0.95071 1.21043 1.01207 0.85740 0.95779 1.98404 1.93811 1.14489 1.96984 0.94043 0.91992 0.95686 0.90889 0.94423 0.92498 0.76866 0.73003 0.81236 0.79550 0.81446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.53 8.51 71.98 0.61 -5.92 16 2 C -0.12 -6.06 5.45 30.59 0.17 -5.89 16 3 C 0.28 15.15 2.24 44.25 0.10 15.25 16 4 H 0.00 -0.02 7.58 -2.39 -0.02 -0.03 16 5 C -0.55 -30.34 8.73 25.60 0.22 -30.12 16 6 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 7 C 0.02 1.00 5.29 84.66 0.45 1.45 16 8 N -0.91 -53.29 11.29 21.45 0.24 -53.04 16 9 Si 0.97 43.14 29.54 68.60 2.03 45.17 16 10 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 11 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 12 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 13 N -0.69 -31.22 5.02 -449.34 -2.25 -33.47 16 14 C 0.56 23.99 4.43 86.67 0.38 24.37 16 15 O -0.58 -29.03 14.24 -4.03 -0.06 -29.09 16 16 C -0.17 -5.63 5.64 -19.99 -0.11 -5.74 16 17 C 0.14 3.69 6.72 22.84 0.15 3.85 16 18 O -0.50 -14.22 12.95 -89.72 -1.16 -15.39 16 19 C -0.13 -2.28 9.97 22.34 0.22 -2.06 16 20 C -0.06 -0.79 10.03 22.29 0.22 -0.57 16 21 C -0.12 -2.10 9.81 22.26 0.22 -1.88 16 22 C -0.01 -0.28 6.35 22.59 0.14 -0.14 16 23 Cl -0.07 -2.01 26.59 -2.72 -0.07 -2.08 16 24 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 25 H 0.06 2.81 4.11 -2.39 -0.01 2.80 16 26 H 0.02 1.27 7.84 -2.39 -0.02 1.25 16 27 H 0.07 4.17 5.95 -2.39 -0.01 4.16 16 28 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 30 H 0.40 16.42 8.52 -92.71 -0.79 15.63 16 31 H 0.41 8.61 9.06 -74.06 -0.67 7.94 16 32 H 0.17 1.84 8.06 -2.91 -0.02 1.82 16 33 H 0.19 0.71 8.06 -2.91 -0.02 0.69 16 34 H 0.17 2.02 8.06 -2.91 -0.02 1.99 16 Total: -1.00 -72.65 303.69 1.20 -71.45 By element: Atomic # 1 Polarization: 24.15 SS G_CDS: -0.30 Total: 23.85 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: 2.78 Total: -7.39 kcal Atomic # 7 Polarization: -84.50 SS G_CDS: -2.01 Total: -86.52 kcal Atomic # 8 Polarization: -43.25 SS G_CDS: -1.22 Total: -44.47 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Atomic # 17 Polarization: -2.01 SS G_CDS: -0.07 Total: -2.08 kcal Total: -72.65 1.20 -71.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762722919.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.616 kcal (2) G-P(sol) polarization free energy of solvation -72.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds